Non-Coding RNA Search

Ss1.1-Pig4-TMW8045D21.5

Sequence:


               
               GATAAGGGGGCATTGCAATTATACAATAAAGCAATACAAAGAATTACTGAAAAGAACATT
AAGTTTTCACCACATGCTTCAACCAGAGAATATGTTTTATTCAGAACCGCATTAGCATCT
GTTCAAAAATCAGCAACCCAGACTCTCCCTAAAAAAATAGCACTGTCCAAGTTACCTGAT
CCAGGTGATCAGAAAGGTTCTACCTTTAGTCGACACAGTGAATTCTCTGAGGTTGCCAAG
ACTTTGAAAAAGAATGAAAGCCTCAAAGCCTGCATTCGCTGTAATTCACCAGCAAAATAT
GATTGCTATTTGCAACGGGCAACCTGTAAACGAGAAGGCTGTGGATTTGACTATTGTACA
AGGTGCCTGTGTGATTATCATACCTCTGAAGACTGTTCAAATAGCAAGCCTTTAAAAGCC
AGTTATAAAATGGGTCCTCTGCCAGGTACTAAGAAAAGCAAGAAGAATTTACGACGATTG
TGATCTCTTATTAAATCAATTGTAACTGATCATGACAGGTTAGTTAGAAAATGTTAGGTT
TTAATTTAAAAAATAAATGTATTGTGATTTTCAACTTTATGTTGAAATCAATGGGTTTTT
TTTCCCCAACTGATAAAAGAAGATGCCCAACCTCTTAAAATATTTTACACTTTAATAGGG
AAAAGTTCAAAATTCTCAATATATATCAAAATTTAAATATTTTAAGAAAAAGGGAAAATA
GTTACTTGATGATTGTGATTCAGAGGCAAAATAAAATTGATTCAGTTTTATAGTAAAGGA
AGACCATGTAATTTTACCTACAGTCTTCAGTGCCAATCTTTTTACCATCTAGTAACATTT
GAGACATTTTATTTGCTTTACCAAATTAATAATACCTATTGAAATATCAACTTCTGATGT
CTGTCAATTTAAATGTTTTGTCACCTTTAACCTCTTTTTCAATGTATTTCCCAAAATGTT
TTATGAAGTCGTATTTTCCTTATTTGTAAAGGTTGTATGTTTTAATATTTTGTACATTTG
TAAATGTTTATTTTTATATGTCAAAGAAAATAAATGTCTCTTGTATATACACATAAATAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATAAGGGGGCATTGCAATTATACAATAAAGCAATACAAAGAATTACTGAAAAGAACATT
AAGTTTTCACCACATGCTTCAACCAGAGAATATGTTTTATTCAGAACCGCATTAGCATCT
GTTCAAAAATCAGCAACCCAGACTCTCCCTAAAAAAATAGCACTGTCCAAGTTACCTGAT
CCAGGTGATCAGAAAGGTTCTACCTTTAGTCGACACAGTGAATTCTCTGAGGTTGCCAAG
ACTTTGAAAAAGAATGAAAGCCTCAAAGCCTGCATTCGCTGTAATTCACCAGCAAAATAT
GATTGCTATTTGCAACGGGCAACCTGTAAACGAGAAGGCTGTGGATTTGACTATTGTACA
AGGTGCCTGTGTGATTATCATACCTCTGAAGACTGTTCAAATAGCAAGCCTTTAAAAGCC
AGTTATAAAATGGGTCCTCTGCCAGGTACTAAGAAAAGCAAGAAGAATTTACGACGATTG
TGATCTCTTATTAAATCAATTGTAACTGATCATGACAGGTTAGTTAGAAAATGTTAGGTT
TTAATTTAAAAAATAAATGTATTGTGATTTTCAACTTTATGTTGAAATCAATGGGTTTTT
TTTCCCCAACTGATAAAAGAAGATGCCCAACCTCTTAAAATATTTTACACTTTAATAGGG
AAAAGTTCAAAATTCTCAATATATATCAAAATTTAAATATTTTAAGAAAAAGGGAAAATA
GTTACTTGATGATTGTGATTCAGAGGCAAAATAAAATTGATTCAGTTTTATAGTAAAGGA
AGACCATGTAATTTTACCTACAGTCTTCAGTGCCAATCTTTTTACCATCTAGTAACATTT
GAGACATTTTATTTGCTTTACCAAATTAATAATACCTATTGAAATATCAACTTCTGATGT
CTGTCAATTTAAATGTTTTGTCACCTTTAACCTCTTTTTCAATGTATTTCCCAAAATGTT
TTATGAAGTCGTATTTTCCTTATTTGTAAAGGTTGTATGTTTTAATATTTTGTACATTTG
TAAATGTTTATTTTTATATGTCAAAGAAAATAAATGTCTCTTGTATATACACATAAATAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               575-681, - strand, RNAz p=0.519589

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               575-681, - strand, RNAz p=0.519589

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               42-233, gnl|bosTau2|chr9 (50905949-50905759)
               

               
               42-233, gnl|Hg17|chr6 (153385710-153385519)
               

               
               42-233, gnl|Mm7|chr10 (4546350-4546537)
               


               
               460-1080, gnl|bosTau2|chr9 (50904952-50904304)
               

               
               460-1080, gnl|Hg17|chr6 (153384434-153383800)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               42-233, gnl|bosTau2|chr9 (50905949-50905759)
               

               
               42-233, gnl|Hg17|chr6 (153385710-153385519)
               

               
               42-233, gnl|Mm7|chr10 (4546350-4546537)
               


               
               460-1080, gnl|bosTau2|chr9 (50904952-50904304)
               

               
               460-1080, gnl|Hg17|chr6 (153384434-153383800)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

Help | Less info


               
               thg (0.507164)
               

               
               fty (0.17584)
               

               
               fco (0.157208)
               

               
               bla (0.124347)
               

               
               nbm (0.0993246)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.507164)
               

               
               fty (0.17584)
               

               
               fco (0.157208)
               

               
               bla (0.124347)
               

               
               nbm (0.0993246)

	42-233, gnl\|bosTau2\|chr9 (50905949-50905759)
	42-233, gnl\|Hg17\|chr6 (153385710-153385519)
	42-233, gnl\|Mm7\|chr10 (4546350-4546537)

	460-1080, gnl\|bosTau2\|chr9 (50904952-50904304)
	460-1080, gnl\|Hg17\|chr6 (153384434-153383800)

	thg (0.507164)
	fty (0.17584)
	fco (0.157208)
	bla (0.124347)
	nbm (0.0993246)