Ss1.1-Pig4-TMW8045E06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTTCAGGATTGCGGAAGTTTTGTAAGGAGGGTCGGGCGGCTTTGAGATCGCGGTGCTGTT TTCAAATAAGTTGCGGAAAGGAGGCCGCTGTTGGGGGTTTGAGAGCAGCCAGCCTACGCA CGTTTAGGGGTAACTCCGGGCCTGACTCGGCGTTGCTGCTGTTGTCTTCTGCCTCCCTTC CTCTTCGGGGAATCGCCTTTCCGCCATGGCATCCACCTCGCCCAACCTCCAGAAAGCGAT AGATCTTGCTAGCAAAGCAGCCCAAGAAGACAAAGCTGGGAACTATGAGGAAGCCCTTCA ATTCTACCAACATGCTGTGCAGTATTTTCTCCATATAATTAAATATGAAGCACAGGGTGA TAAAGCCAAGCAAAATATCAGGGCAAAGTGTACAGAATATCTCGACAGAGCAGAAAAACT AAAAGAGTACCTGAAAAAGAAAGAAAGCAAACCACAGAAGCCAGTGAAAGAGGGACAACC AAGTCCAGCTGATGAGAAGGGGAATGACAGTGATGGGGAAGGAGAATCTGATGATCCTGA AAAAAAGAAACTACAGAATCAACTTCAAGGTGCCATTGTTATAGAACGACCAAATGTGAA ATGGAGTGATGTTGCTGGTCTTGAAGGAGCCAAAGAAGCACTGAAAGAGGCTATTATATT GCCTATTAAGTTTCCTCATCTCTTTACGGGCAAGAGAACACCTTGGCGAGGAATCTTGTT ATTTGGGCCACCTGGTACAGGAAAATCCTATTTAGCCAAAGCTGTAGCAACAGAAGCAAA CAACTCAACATTTTTCTCAGTATCTTCCTCTGACCTTGTTTCTAAGTGGCTAGGTGAAAG TGAAAAGCTAGTTAAGAACTTATTTCAACTTGCCAGAGAGAATAAACCTTCCATTATCTT CATCGATGAAATTGATTCTCTGTGTGGTTCAAGAAGTGAAAATGAAAGTGAAGCTGCACG TAGAATTAAAACAGAGTTCCTAGTTCAAATGCAAGGGGTTGGTGTGGACAATGATGGAAT TTTGGTTCTGGGAGCAACAAATATACCCTGGGTTTTGGATTCTGCCATTAGGCGAAGATT TGAGAAACGAATTTATATCCCTTTGCCTGAGGCCCACACCCGAACAGCAATGTTTAAACT TCACTTAGGGACCACGCAGAACAATCTAACAGAAGCAGACTTCTGGGATCTTGGAAAGAA AACTGAAGGTTATTCAGGGGCTGACATAAGCATCATTGTGCGTGATGCTCTTATGCAGCC GGTTAGGAAAGTACAGTCAGCTACTCATTTTAAAAAGGTTCGTGGACCTTCACGAGCTGA TCCTAACCACATAGTAGATGATCTGCTAACACCCTGTTCTCCAGGTGACCCTGGTGCCAT TGAAATGACATGGATGGATATCCCTGGGGATAAACTTTTGGAGCCAGTTGTTTGCATGTC GGATATGCTCCGGTCACTATCAAGCACAAAACCCACAGTCAATGAACACGACTTGTTGAA ATTAAAGAAGTTTACGGAAGATTTTGGCCAAGAAGGCTAAACCAAAGACCGCAAGGAAGA AATTTACCATGTGTGTTTCTTTCTTTCATGGGTATTTTTGCCCTTCTTGGATGGCGTTCA GATTTTTTCCTGTAAAACTCTTTTACCACAGGGAAATAGAGATCTTACTTCAGAGTTCCT TTAAGGTTTATATATACTTTTGCTCCATTATCAGTTAAATTCTCCTGTTAACAAAAATTA TAAAATAACGGGTTATAAGAAAATGAGTAGTAACTAAAAAAAAGAAGAGTGAGTGATACA TAAAAAGCAAAAAGAAAAAGAAAAAGAAATTACCCAGTAAAAAGATTTAAAATTGAGATG CAAATATTTTAAATTGTTATGAATAGTGGTCTTTGCAAAGAGCATTCATTTTTTTTAAAC TAAAATGAAATGAGGCTTATTTCATATTTTGAAAAAAATCTTAAGCATCCTTCTCATCAA TGTAAAATTAACTTTATTAAAAAGTTAAAAATGATTTACTCTCAGGGATGGTCAGTAAAA CAGCAAAGAGCACTGTGATTGGGCTCGAAAGATTTTAAATTGCGTTCTTCCCACGGCTTT TATTGATTTTTGATAGATTGGTGTTTTTCTCCATGTAGATTTAAGTTTCTATAAAAGCAG CAGGCTTTTTTATACTTAACTAAATAATACCTTTCACTGTGCAGTCTCAAGAGAAAGACT CTCTAGACATTGTCTTTATCTTGAAGAAGAAAATTGTCTACTTCAGTGTCTTTTTGTAGC AAGAGTGACCAAAACAGGTGGTTAATAAATACGTAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTTCAGGATTGCGGAAGTTTTGTAAGGAGGGTCGGGCGGCTTTGAGATCGCGGTGCTGTT TTCAAATAAGTTGCGGAAAGGAGGCCGCTGTTGGGGGTTTGAGAGCAGCCAGCCTACGCA CGTTTAGGGGTAACTCCGGGCCTGACTCGGCGTTGCTGCTGTTGTCTTCTGCCTCCCTTC CTCTTCGGGGAATCGCCTTTCCGCCATGGCATCCACCTCGCCCAACCTCCAGAAAGCGAT AGATCTTGCTAGCAAAGCAGCCCAAGAAGACAAAGCTGGGAACTATGAGGAAGCCCTTCA ATTCTACCAACATGCTGTGCAGTATTTTCTCCATATAATTAAATATGAAGCACAGGGTGA TAAAGCCAAGCAAAATATCAGGGCAAAGTGTACAGAATATCTCGACAGAGCAGAAAAACT AAAAGAGTACCTGAAAAAGAAAGAAAGCAAACCACAGAAGCCAGTGAAAGAGGGACAACC AAGTCCAGCTGATGAGAAGGGGAATGACAGTGATGGGGAAGGAGAATCTGATGATCCTGA AAAAAAGAAACTACAGAATCAACTTCAAGGTGCCATTGTTATAGAACGACCAAATGTGAA ATGGAGTGATGTTGCTGGTCTTGAAGGAGCCAAAGAAGCACTGAAAGAGGCTATTATATT GCCTATTAAGTTTCCTCATCTCTTTACGGGCAAGAGAACACCTTGGCGAGGAATCTTGTT ATTTGGGCCACCTGGTACAGGAAAATCCTATTTAGCCAAAGCTGTAGCAACAGAAGCAAA CAACTCAACATTTTTCTCAGTATCTTCCTCTGACCTTGTTTCTAAGTGGCTAGGTGAAAG TGAAAAGCTAGTTAAGAACTTATTTCAACTTGCCAGAGAGAATAAACCTTCCATTATCTT CATCGATGAAATTGATTCTCTGTGTGGTTCAAGAAGTGAAAATGAAAGTGAAGCTGCACG TAGAATTAAAACAGAGTTCCTAGTTCAAATGCAAGGGGTTGGTGTGGACAATGATGGAAT TTTGGTTCTGGGAGCAACAAATATACCCTGGGTTTTGGATTCTGCCATTAGGCGAAGATT TGAGAAACGAATTTATATCCCTTTGCCTGAGGCCCACACCCGAACAGCAATGTTTAAACT TCACTTAGGGACCACGCAGAACAATCTAACAGAAGCAGACTTCTGGGATCTTGGAAAGAA AACTGAAGGTTATTCAGGGGCTGACATAAGCATCATTGTGCGTGATGCTCTTATGCAGCC GGTTAGGAAAGTACAGTCAGCTACTCATTTTAAAAAGGTTCGTGGACCTTCACGAGCTGA TCCTAACCACATAGTAGATGATCTGCTAACACCCTGTTCTCCAGGTGACCCTGGTGCCAT TGAAATGACATGGATGGATATCCCTGGGGATAAACTTTTGGAGCCAGTTGTTTGCATGTC GGATATGCTCCGGTCACTATCAAGCACAAAACCCACAGTCAATGAACACGACTTGTTGAA ATTAAAGAAGTTTACGGAAGATTTTGGCCAAGAAGGCTAAACCAAAGACCGCAAGGAAGA AATTTACCATGTGTGTTTCTTTCTTTCATGGGTATTTTTGCCCTTCTTGGATGGCGTTCA GATTTTTTCCTGTAAAACTCTTTTACCACAGGGAAATAGAGATCTTACTTCAGAGTTCCT TTAAGGTTTATATATACTTTTGCTCCATTATCAGTTAAATTCTCCTGTTAACAAAAATTA TAAAATAACGGGTTATAAGAAAATGAGTAGTAACTAAAAAAAAGAAGAGTGAGTGATACA TAAAAAGCAAAAAGAAAAAGAAAAAGAAATTACCCAGTAAAAAGATTTAAAATTGAGATG CAAATATTTTAAATTGTTATGAATAGTGGTCTTTGCAAAGAGCATTCATTTTTTTTAAAC TAAAATGAAATGAGGCTTATTTCATATTTTGAAAAAAATCTTAAGCATCCTTCTCATCAA TGTAAAATTAACTTTATTAAAAAGTTAAAAATGATTTACTCTCAGGGATGGTCAGTAAAA CAGCAAAGAGCACTGTGATTGGGCTCGAAAGATTTTAAATTGCGTTCTTCCCACGGCTTT TATTGATTTTTGATAGATTGGTGTTTTTCTCCATGTAGATTTAAGTTTCTATAAAAGCAG CAGGCTTTTTTATACTTAACTAAATAATACCTTTCACTGTGCAGTCTCAAGAGAAAGACT CTCTAGACATTGTCTTTATCTTGAAGAAGAAAATTGTCTACTTCAGTGTCTTTTTGTAGC AAGAGTGACCAAAACAGGTGGTTAATAAATACGTAC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 63 entry(ies) | More info |
| Aligned organism(s): 63 entry(ies) | Help | Less info |
| 230-344, gnl|bosTau2|chr24 (44911015-44910901) | |
| 230-344, gnl|canFam2|chr1 (16659077-16658936) | |
| 230-344, gnl|danRer3|chrUn (92220465-92220329) | |
| 230-344, gnl|dasNov1|scaffold_120464 (534-392) | |
| 230-344, gnl|echTel1|scaffold_306381 (11742-11872) | |
| 230-344, gnl|fr1|chrUn (125244364-125244492) | |
| 230-344, gnl|galGal2|chr2 (67542996-67542887) | |
| 230-344, gnl|hg17|chr18 (59229675-59229816) | |
| 230-344, gnl|Hg17|chr18 (59229794-59229680) | |
| 230-344, gnl|loxAfr1|scaffold_31997 (8236-8358) | |
| 230-344, gnl|mm7|chr1 (106691529-106691670) | |
| 230-344, gnl|Mm7|chr1 (106691648-106691534) | |
| 230-344, gnl|monDom2|scaffold_4 (67416771-67416908) | |
| 230-344, gnl|oryCun1|scaffold_196434 (6705-6846) | |
| 230-344, gnl|panTro1|chr17 (56066207-56066348) | |
| 230-344, gnl|rheMac2|chr18 (56794482-56794623) | |
| 230-344, gnl|rn3|chr13 (12980817-12980958) | |
| 230-344, gnl|tetNig1|chr15 (6514345-6514490) | |
| 230-344, gnl|xenTro1|scaffold_78 (853724-853602) | |
| 345-506, gnl|bosTau2|chr24 (44909684-44909523) | |
| 345-506, gnl|Hg17|chr18 (59228659-59228498) | |
| 345-506, gnl|Mm7|chr1 (106689941-106689780) | |
| 689-852, gnl|bosTau2|chr18 (13869290-13869127) | |
| 689-852, gnl|canFam2|chr5 (83342485-83342309) | |
| 689-852, gnl|danRer3|chrUn (92222888-92223065) | |
| 689-852, gnl|dasNov1|scaffold_107917 (10438-10252) | |
| 689-852, gnl|echTel1|scaffold_319253 (63984-64167) | |
| 689-852, gnl|fr1|chrUn (235179407-235179227) | |
| 689-852, gnl|galGal2|chr2 (67549726-67549904) | |
| 689-852, gnl|hg17|chr16 (67910779-67910963) | |
| 689-852, gnl|Hg17|chr16 (67910790-67910953) | |
| 689-852, gnl|loxAfr1|scaffold_31997 (5032-4845) | |
| 689-852, gnl|mm7|chr8 (105640999-105641183) | |
| 689-852, gnl|Mm7|chr8 (105641010-105641173) | |
| 689-852, gnl|monDom2|scaffold_23 (4959443-4959259) | |
| 689-852, gnl|oryCun1|scaffold_205766 (46627-46445) | |
| 689-852, gnl|panTro1|chr18 (62251495-62251679) | |
| 689-852, gnl|rheMac2|chr20 (67696618-67696802) | |
| 689-852, gnl|rn3|chr19 (36901168-36901353) | |
| 689-852, gnl|tetNig1|chr13 (780526-780700) | |
| 689-852, gnl|xenTro1|scaffold_578 (149834-150009) | |
| 1076-1299, gnl|bosTau2|chr18 (13867858-13867635) | |
| 1076-1299, gnl|canFam2|chr5 (83341007-83340842) | |
| 1076-1299, gnl|danRer3|chrUn (92225312-92225470) | |
| 1076-1299, gnl|dasNov1|scaffold_129302 (1402-1539) | |
| 1076-1299, gnl|echTel1|scaffold_319253 (65508-65673) | |
| 1076-1299, gnl|fr1|chrUn (235178582-235178422) | |
| 1076-1299, gnl|galGal2|chr2 (67552738-67552877) | |
| 1076-1299, gnl|hg17|chr16 (67912426-67912591) | |
| 1076-1299, gnl|Hg17|chr16 (67912453-67912676) | |
| 1076-1299, gnl|loxAfr1|scaffold_31997 (3386-3221) | |
| 1076-1299, gnl|mm7|chr8 (105643024-105643185) | |
| 1076-1299, gnl|Mm7|chr8 (105643047-105643270) | |
| 1076-1299, gnl|monDom2|scaffold_23 (4956592-4956431) | |
| 1076-1299, gnl|oryCun1|scaffold_205766 (44518-44353) | |
| 1076-1299, gnl|panTro1|chr18 (62253142-62253307) | |
| 1076-1299, gnl|rheMac2|chr20 (67698246-67698411) | |
| 1076-1299, gnl|rn3|chr19 (36903317-36903478) | |
| 1076-1299, gnl|tetNig1|chr13 (781351-781511) | |
| 1076-1299, gnl|xenTro1|scaffold_578 (152292-152450) | |
| 1782-2316, gnl|bosTau2|chr24 (44894142-44893593) | |
| 1782-2316, gnl|Hg17|chr18 (59208977-59208100) | |
| 1782-2316, gnl|Mm7|chr1 (106672098-106671595) |
| Aligned organism(s): 63 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 230-344, gnl|bosTau2|chr24 (44911015-44910901) | |
| 230-344, gnl|canFam2|chr1 (16659077-16658936) | |
| 230-344, gnl|danRer3|chrUn (92220465-92220329) | |
| 230-344, gnl|dasNov1|scaffold_120464 (534-392) | |
| 230-344, gnl|echTel1|scaffold_306381 (11742-11872) | |
| 230-344, gnl|fr1|chrUn (125244364-125244492) | |
| 230-344, gnl|galGal2|chr2 (67542996-67542887) | |
| 230-344, gnl|hg17|chr18 (59229675-59229816) | |
| 230-344, gnl|Hg17|chr18 (59229794-59229680) | |
| 230-344, gnl|loxAfr1|scaffold_31997 (8236-8358) | |
| 230-344, gnl|mm7|chr1 (106691529-106691670) | |
| 230-344, gnl|Mm7|chr1 (106691648-106691534) | |
| 230-344, gnl|monDom2|scaffold_4 (67416771-67416908) | |
| 230-344, gnl|oryCun1|scaffold_196434 (6705-6846) | |
| 230-344, gnl|panTro1|chr17 (56066207-56066348) | |
| 230-344, gnl|rheMac2|chr18 (56794482-56794623) | |
| 230-344, gnl|rn3|chr13 (12980817-12980958) | |
| 230-344, gnl|tetNig1|chr15 (6514345-6514490) | |
| 230-344, gnl|xenTro1|scaffold_78 (853724-853602) | |
| 345-506, gnl|bosTau2|chr24 (44909684-44909523) | |
| 345-506, gnl|Hg17|chr18 (59228659-59228498) | |
| 345-506, gnl|Mm7|chr1 (106689941-106689780) | |
| 689-852, gnl|bosTau2|chr18 (13869290-13869127) | |
| 689-852, gnl|canFam2|chr5 (83342485-83342309) | |
| 689-852, gnl|danRer3|chrUn (92222888-92223065) | |
| 689-852, gnl|dasNov1|scaffold_107917 (10438-10252) | |
| 689-852, gnl|echTel1|scaffold_319253 (63984-64167) | |
| 689-852, gnl|fr1|chrUn (235179407-235179227) | |
| 689-852, gnl|galGal2|chr2 (67549726-67549904) | |
| 689-852, gnl|hg17|chr16 (67910779-67910963) | |
| 689-852, gnl|Hg17|chr16 (67910790-67910953) | |
| 689-852, gnl|loxAfr1|scaffold_31997 (5032-4845) | |
| 689-852, gnl|mm7|chr8 (105640999-105641183) | |
| 689-852, gnl|Mm7|chr8 (105641010-105641173) | |
| 689-852, gnl|monDom2|scaffold_23 (4959443-4959259) | |
| 689-852, gnl|oryCun1|scaffold_205766 (46627-46445) | |
| 689-852, gnl|panTro1|chr18 (62251495-62251679) | |
| 689-852, gnl|rheMac2|chr20 (67696618-67696802) | |
| 689-852, gnl|rn3|chr19 (36901168-36901353) | |
| 689-852, gnl|tetNig1|chr13 (780526-780700) | |
| 689-852, gnl|xenTro1|scaffold_578 (149834-150009) | |
| 1076-1299, gnl|bosTau2|chr18 (13867858-13867635) | |
| 1076-1299, gnl|canFam2|chr5 (83341007-83340842) | |
| 1076-1299, gnl|danRer3|chrUn (92225312-92225470) | |
| 1076-1299, gnl|dasNov1|scaffold_129302 (1402-1539) | |
| 1076-1299, gnl|echTel1|scaffold_319253 (65508-65673) | |
| 1076-1299, gnl|fr1|chrUn (235178582-235178422) | |
| 1076-1299, gnl|galGal2|chr2 (67552738-67552877) | |
| 1076-1299, gnl|hg17|chr16 (67912426-67912591) | |
| 1076-1299, gnl|Hg17|chr16 (67912453-67912676) | |
| 1076-1299, gnl|loxAfr1|scaffold_31997 (3386-3221) | |
| 1076-1299, gnl|mm7|chr8 (105643024-105643185) | |
| 1076-1299, gnl|Mm7|chr8 (105643047-105643270) | |
| 1076-1299, gnl|monDom2|scaffold_23 (4956592-4956431) | |
| 1076-1299, gnl|oryCun1|scaffold_205766 (44518-44353) | |
| 1076-1299, gnl|panTro1|chr18 (62253142-62253307) | |
| 1076-1299, gnl|rheMac2|chr20 (67698246-67698411) | |
| 1076-1299, gnl|rn3|chr19 (36903317-36903478) | |
| 1076-1299, gnl|tetNig1|chr13 (781351-781511) | |
| 1076-1299, gnl|xenTro1|scaffold_578 (152292-152450) | |
| 1782-2316, gnl|bosTau2|chr24 (44894142-44893593) | |
| 1782-2316, gnl|Hg17|chr18 (59208977-59208100) | |
| 1782-2316, gnl|Mm7|chr1 (106672098-106671595) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| liv (0.292569) | |
| spl (0.286369) | |
| cbl (0.229595) | |
| rec (0.17307) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| nmm (0.132802) | |
| ret (0.128733) | |
| sug (0.127291) | |
| ese (0.126502) | |
| bla (0.124347) | |
| eep (0.122564) | |
| pgl (0.118483) | |
| jej (0.0989218) | |
| ldo (0.0970026) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| liv (0.292569) | |
| spl (0.286369) | |
| cbl (0.229595) | |
| rec (0.17307) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| nmm (0.132802) | |
| ret (0.128733) | |
| sug (0.127291) | |
| ese (0.126502) | |
| bla (0.124347) | |
| eep (0.122564) | |
| pgl (0.118483) | |
| jej (0.0989218) | |
| ldo (0.0970026) |