Non-Coding RNA Search

Ss1.1-Pig4-TMW8045E11.3

Sequence:


               
               GACACTCAACTCCTCGAAAGGGGAGGCATCAGGAATAGCACGAGACTGTGTGAAGGATAA
GACTGTCCACGTCGAGATCCAAATCTTGATTTCGTTGTACCGGCAAAGGACTGCCTGCGT
GCTGGAAATACGTTGGAAGCCCAAACAGTATGCCCAGCCCGTGGCTCATCCATGGTAAAC
TTGTCAGACCATTTCTGCTGCTATGGTCACCCACAATTTCATTTGTCTCAGACCCGGGGC
GAATGGGGCTGGCTGGTTCCTTTCAATGTTAACGTATGGAGATGCGCGTTCAGATGGTTA
ATGTCCCAGTGCTTCGGATGCAGGGAGGGAGAGTGCATACCGACAGCTATTTATTCATAT
GTGTGTGTGTCTTTGGCCGCCTTTGAGTTCTCTGTATCTACTGTGTATGTGAATGGTCAC
GTGGGATTCAGTGGTGTTGTTGTGACTTTGACCTAGGGCCCGAGTGTCACGGCTGATCTC
GGCACTCGTTGGCACAGTGATAGTTAGAGATGCAAAGCAAAGCTGTCAAGCCCAAGGGCT
TCGCTTCTGCCCCCCCCAACCCCGCCCCCGAGCCGGGCATGCCGCAGAAGCAAGTTCTTC
GTTTGCCCACCTTCCTCTCCGCCTTCCCATGTAGCTCAGTGTTCAGGAAGCTAGCAAGCC
CAGGGGTTTCCAGAGTTGGCCTGCAGAAGAAGAGAGTTCAGAAGCAGGCCCCAGGCGTCC
TGGCCCCTCCTGTCCTGTGGGCCATTTTACAGCCCCCCAAAGACCAGCCCTGTCTCCGGC
CCGCAGTTCACCTCTAAGTATGTACAGCTCAACCTGCATCCCCCGAACAGTCCTGTATCC
ATAGTCACCATGGGCTGGTTTGAGGCCCTGAGTGGGCTCTGAATGGTGAAGGAGAGCAGG
CTGCCCAGGGCCACATGTAGATACCTCTCGCCAGCACTGGAGGCTGGTCTGTTCTAAGCC
AGAAAGACAGCGGGGGCCCGAGTGGAACCTGCCCAGGAGCATCCCTCGTGCTTTCGTTGT
CCCTGTCTGCAGGTAGGCTAGCTGACCATCTCCTTGAGTCCTTCCCTTTGGGAAACCCAG
CTCACAGTATTGATCTCCTTTTTTGCCTTGTACTGAATGACACGTTACCTCCACGCTCTC
CCGGACTAGGCGGTCCACAGGACCACCGGGCTGCTTCCTCTCCTAGATGGGGATGGGGAG
TTGACAGAGATGAGGGCCCGAGGAATGAGCCTGAATGGCAAGAAAACAAAGGAAAGTGTT
AAACTGTCACACAGAAGGTTAACTTTTCCAAGGTTTGCAGTTAAAGGTATTTGACCATTC
GCTGGCTGAGCCAGATCAAGGGAACTTGAGAGCTTTTACTGTGATTCTTCAATGTAAAAA
ATAAACAACAATGTCAAACTGTGTTTATATGATTTGTATAAAGCCTTTTTAAGATTACTA
TTTAAATAAACATTATACCAGAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACACTCAACTCCTCGAAAGGGGAGGCATCAGGAATAGCACGAGACTGTGTGAAGGATAA
GACTGTCCACGTCGAGATCCAAATCTTGATTTCGTTGTACCGGCAAAGGACTGCCTGCGT
GCTGGAAATACGTTGGAAGCCCAAACAGTATGCCCAGCCCGTGGCTCATCCATGGTAAAC
TTGTCAGACCATTTCTGCTGCTATGGTCACCCACAATTTCATTTGTCTCAGACCCGGGGC
GAATGGGGCTGGCTGGTTCCTTTCAATGTTAACGTATGGAGATGCGCGTTCAGATGGTTA
ATGTCCCAGTGCTTCGGATGCAGGGAGGGAGAGTGCATACCGACAGCTATTTATTCATAT
GTGTGTGTGTCTTTGGCCGCCTTTGAGTTCTCTGTATCTACTGTGTATGTGAATGGTCAC
GTGGGATTCAGTGGTGTTGTTGTGACTTTGACCTAGGGCCCGAGTGTCACGGCTGATCTC
GGCACTCGTTGGCACAGTGATAGTTAGAGATGCAAAGCAAAGCTGTCAAGCCCAAGGGCT
TCGCTTCTGCCCCCCCCAACCCCGCCCCCGAGCCGGGCATGCCGCAGAAGCAAGTTCTTC
GTTTGCCCACCTTCCTCTCCGCCTTCCCATGTAGCTCAGTGTTCAGGAAGCTAGCAAGCC
CAGGGGTTTCCAGAGTTGGCCTGCAGAAGAAGAGAGTTCAGAAGCAGGCCCCAGGCGTCC
TGGCCCCTCCTGTCCTGTGGGCCATTTTACAGCCCCCCAAAGACCAGCCCTGTCTCCGGC
CCGCAGTTCACCTCTAAGTATGTACAGCTCAACCTGCATCCCCCGAACAGTCCTGTATCC
ATAGTCACCATGGGCTGGTTTGAGGCCCTGAGTGGGCTCTGAATGGTGAAGGAGAGCAGG
CTGCCCAGGGCCACATGTAGATACCTCTCGCCAGCACTGGAGGCTGGTCTGTTCTAAGCC
AGAAAGACAGCGGGGGCCCGAGTGGAACCTGCCCAGGAGCATCCCTCGTGCTTTCGTTGT
CCCTGTCTGCAGGTAGGCTAGCTGACCATCTCCTTGAGTCCTTCCCTTTGGGAAACCCAG
CTCACAGTATTGATCTCCTTTTTTGCCTTGTACTGAATGACACGTTACCTCCACGCTCTC
CCGGACTAGGCGGTCCACAGGACCACCGGGCTGCTTCCTCTCCTAGATGGGGATGGGGAG
TTGACAGAGATGAGGGCCCGAGGAATGAGCCTGAATGGCAAGAAAACAAAGGAAAGTGTT
AAACTGTCACACAGAAGGTTAACTTTTCCAAGGTTTGCAGTTAAAGGTATTTGACCATTC
GCTGGCTGAGCCAGATCAAGGGAACTTGAGAGCTTTTACTGTGATTCTTCAATGTAAAAA
ATAAACAACAATGTCAAACTGTGTTTATATGATTTGTATAAAGCCTTTTTAAGATTACTA
TTTAAATAAACATTATACCAGAGA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               809-968, - strand, RNAz p=0.905723
               

               
               1243-1362, - strand, RNAz p=0.963471

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               809-968, - strand, RNAz p=0.905723
               

               
               1243-1362, - strand, RNAz p=0.963471

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-1464, gnl|bosTau2|chr2 (54499750-54498297)
               

               
               1-1464, gnl|Hg17|chr2 (206486899-206488361)
               

               
               1-1464, gnl|Mm7|chr1 (63057874-63059352)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1464, gnl|bosTau2|chr2 (54499750-54498297)
               

               
               1-1464, gnl|Hg17|chr2 (206486899-206488361)
               

               
               1-1464, gnl|Mm7|chr1 (63057874-63059352)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

Help | Less info


               
               cga (0.279096)
               

               
               aor (0.195274)
               

               
               sto (0.179824)
               

               
               fbs (0.175346)
               

               
               nje (0.16592)
               

               
               ssp (0.13552)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               clu (0.119646)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.279096)
               

               
               aor (0.195274)
               

               
               sto (0.179824)
               

               
               fbs (0.175346)
               

               
               nje (0.16592)
               

               
               ssp (0.13552)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               clu (0.119646)

	809-968, - strand, RNAz p=0.905723
	1243-1362, - strand, RNAz p=0.963471

	1-1464, gnl\|bosTau2\|chr2 (54499750-54498297)
	1-1464, gnl\|Hg17\|chr2 (206486899-206488361)
	1-1464, gnl\|Mm7\|chr1 (63057874-63059352)

	cga (0.279096)
	aor (0.195274)
	sto (0.179824)
	fbs (0.175346)
	nje (0.16592)
	ssp (0.13552)
	bla (0.124347)
	eep (0.122564)
	clu (0.119646)