Ss1.1-Pig4-TMW8045E16.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGTCTAGCTACTGCCTCTTGGCTGAAAATTCGTACATCAAAATGACATACGATGTGCAGG GCAGCCTGCAGAAGGACAGCCAGGTCACCGTGTCCGTGGTCCTGGAGAACCAGAGCAGCA GCTTCCTCAAGAGTATGGAACTCAACGTGCTGGACTCACTCAACGCCCGGCTGGCCCGGC CAGAGGGCTCCTCAGTCCATGATGGTGTCCCTGTGCCTTTCCAGCTGCCCCCTGGCATCT CCAACGAAGCCCAGTTTGTGTTCACCATTCAGAGCATCGTCATGGCGCAGAAGCTCAAGG GGACACTATCCTTCATTGCCAAGAATGACGAAGGCTCCACCCATGAGAAGCTCGACTTCA AGCTGCACTTCACCTGCACCTCCTACTTGGTCACCACACCTTGCTACAGTGATGCCTTTG CCAAGTTGTTGGAGTCTGGGGACCTGAGCATGAGCTCAATCAAGGTTGATGGCATTAGTA TGTCCTTCCAGAACCTTCTGGCAAAGATCTGTTTTCATCACCGTTTTTCCGTTGTGGAAC GAGTGGATTCCTGCGCCTCCATGTACAGCCGCTCCATCCAGGGACACCACGTCTGCCTCC TGGTGAAGAAGGGTGAAAAGTCGGTGTCGGTGGATGGGAAGTGCAGTGATCCAACGCTGC TGAGCAACTTGCTGGAGGAGATGAAGGAGACCCTGGCCAAGTGCTGAACGCACCTCAGGC CACTGTGGAGGGGACTTGCAGGGAGGGCAGCCCCAAGGGCTGGGGCTCTCCTCTCGCTGG CTTTGGGTCTAGCCCAGGAGATAACATAAGGCCACTGTCGTCCACTGTGTAGACAGAGAG GTTTATGTTGCGTTCATTTATCCGTCATTTTTGACTCTCCACGGTCTTTGGTGAGAAGCC CCGCTTCAGTGCCCAGACCAGAAGGGGCTCCTATAGCTGGAGCGGACTGTCCACATGGCT GCAGGGGCTGCCCAAGGATGATCGGGACCTGGCAAGATTTGGACAGGCCAGTGCATCCAC GTCTGTTCAGTCATCTGAGTCCTTGAGTCCCCAGGTACCCTGCCCAGTGGCAGCTGGGGA TGAAGAAAGAGCCTGCCAGCTGTTCAGCCAGGATACACTCCTCTTCATCCTCATGCCGAG GGGCACGTTATCCCCCAGGACACGGTGGGGGAGGGTCTTGCAGGCTGTTGCCTGTCCAAT TCCATTGATGTCTTCATGACACCTGGTGGGCATCCCAGTTGCAGCAGAGACTAGGCTGTG TTGGCTTCCATGCCCTGGTCGGGGTATTGTGAGTTGGGGGTGCTGCAGTTCCAGTCCCCT CCTCATCATTGGACACCTGCAGGCTTTCCCCAGTCCTGGAGGGCCCAATTCTGGGCCCCT CGGCTGTCCTAGGGCAGCTAGGCCCTTGAGTTGTGCATCACGCACAGAGAGGGGGTCCTG GCCCACCCCCATGAGACTCAACTTTCCTCAGAGATGATGGTCCTCAATGACGTTGAACTT TCCTTTTGATGAAAACTGTCACTTTAGCATGTAGAGTAATCTATTACAGAATCCTGTGCA GTGATTCTAGAACCTCGAAATTGTATGATGTGTTATATAAGAACTTCTTTGCTATTGACA TTCCCGTATAAAGGACAGAGAGACATATCACGCTGCTGTAATGATTGTGTCAAGATGATC AATAAACTTGCAAAACAGAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGTCTAGCTACTGCCTCTTGGCTGAAAATTCGTACATCAAAATGACATACGATGTGCAGG GCAGCCTGCAGAAGGACAGCCAGGTCACCGTGTCCGTGGTCCTGGAGAACCAGAGCAGCA GCTTCCTCAAGAGTATGGAACTCAACGTGCTGGACTCACTCAACGCCCGGCTGGCCCGGC CAGAGGGCTCCTCAGTCCATGATGGTGTCCCTGTGCCTTTCCAGCTGCCCCCTGGCATCT CCAACGAAGCCCAGTTTGTGTTCACCATTCAGAGCATCGTCATGGCGCAGAAGCTCAAGG GGACACTATCCTTCATTGCCAAGAATGACGAAGGCTCCACCCATGAGAAGCTCGACTTCA AGCTGCACTTCACCTGCACCTCCTACTTGGTCACCACACCTTGCTACAGTGATGCCTTTG CCAAGTTGTTGGAGTCTGGGGACCTGAGCATGAGCTCAATCAAGGTTGATGGCATTAGTA TGTCCTTCCAGAACCTTCTGGCAAAGATCTGTTTTCATCACCGTTTTTCCGTTGTGGAAC GAGTGGATTCCTGCGCCTCCATGTACAGCCGCTCCATCCAGGGACACCACGTCTGCCTCC TGGTGAAGAAGGGTGAAAAGTCGGTGTCGGTGGATGGGAAGTGCAGTGATCCAACGCTGC TGAGCAACTTGCTGGAGGAGATGAAGGAGACCCTGGCCAAGTGCTGAACGCACCTCAGGC CACTGTGGAGGGGACTTGCAGGGAGGGCAGCCCCAAGGGCTGGGGCTCTCCTCTCGCTGG CTTTGGGTCTAGCCCAGGAGATAACATAAGGCCACTGTCGTCCACTGTGTAGACAGAGAG GTTTATGTTGCGTTCATTTATCCGTCATTTTTGACTCTCCACGGTCTTTGGTGAGAAGCC CCGCTTCAGTGCCCAGACCAGAAGGGGCTCCTATAGCTGGAGCGGACTGTCCACATGGCT GCAGGGGCTGCCCAAGGATGATCGGGACCTGGCAAGATTTGGACAGGCCAGTGCATCCAC GTCTGTTCAGTCATCTGAGTCCTTGAGTCCCCAGGTACCCTGCCCAGTGGCAGCTGGGGA TGAAGAAAGAGCCTGCCAGCTGTTCAGCCAGGATACACTCCTCTTCATCCTCATGCCGAG GGGCACGTTATCCCCCAGGACACGGTGGGGGAGGGTCTTGCAGGCTGTTGCCTGTCCAAT TCCATTGATGTCTTCATGACACCTGGTGGGCATCCCAGTTGCAGCAGAGACTAGGCTGTG TTGGCTTCCATGCCCTGGTCGGGGTATTGTGAGTTGGGGGTGCTGCAGTTCCAGTCCCCT CCTCATCATTGGACACCTGCAGGCTTTCCCCAGTCCTGGAGGGCCCAATTCTGGGCCCCT CGGCTGTCCTAGGGCAGCTAGGCCCTTGAGTTGTGCATCACGCACAGAGAGGGGGTCCTG GCCCACCCCCATGAGACTCAACTTTCCTCAGAGATGATGGTCCTCAATGACGTTGAACTT TCCTTTTGATGAAAACTGTCACTTTAGCATGTAGAGTAATCTATTACAGAATCCTGTGCA GTGATTCTAGAACCTCGAAATTGTATGATGTGTTATATAAGAACTTCTTTGCTATTGACA TTCCCGTATAAAGGACAGAGAGACATATCACGCTGCTGTAATGATTGTGTCAAGATGATC AATAAACTTGCAAAACAGAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 399-529, - strand, RNAz p=0.78092 | |
| 860-989, + strand, RNAz p=0.863502 | |
| 1371-1489, + strand, RNAz p=0.978201 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 399-529, - strand, RNAz p=0.78092 | |
| 860-989, + strand, RNAz p=0.863502 | |
| 1371-1489, + strand, RNAz p=0.978201 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of BC010065, + |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 44-235, gnl|bosTau2|chr7 (18219245-18219436) | |
| 44-235, gnl|canFam2|chr20 (60067603-60067482) | |
| 44-235, gnl|danRer3|chr22 (18574995-18574874) | |
| 44-235, gnl|echTel1|scaffold_268702 (8258-8137) | |
| 44-235, gnl|fr1|chrUn (161763871-161763989) | |
| 44-235, gnl|galGal2|chr28 (1131285-1131166) | |
| 44-235, gnl|hg17|chr19 (2061702-2061823) | |
| 44-235, gnl|Hg17|chr19 (2061896-2061705) | |
| 44-235, gnl|mm7|chr10 (80499383-80499504) | |
| 44-235, gnl|Mm7|chr10 (80499577-80499386) | |
| 44-235, gnl|monDom2|scaffold_75 (3831054-3831175) | |
| 44-235, gnl|panTro1|chr20 (2172250-2172370) | |
| 44-235, gnl|rheMac2|chr19 (1898038-1898159) | |
| 44-235, gnl|rn3|chr7 (10513125-10513004) | |
| 44-235, gnl|tetNig1|chr1 (10547147-10547268) | |
| 399-529, gnl|bosTau2|chr7 (18220389-18220519) | |
| 399-529, gnl|canFam2|chr20 (60068704-60068566) | |
| 399-529, gnl|danRer3|chr22 (18577708-18577582) | |
| 399-529, gnl|echTel1|scaffold_268702 (8877-8741) | |
| 399-529, gnl|fr1|chrUn (161763120-161763256) | |
| 399-529, gnl|galGal2|chr28 (1132888-1132751) | |
| 399-529, gnl|hg17|chr19 (2060083-2060222) | |
| 399-529, gnl|Hg17|chr19 (2060217-2060087) | |
| 399-529, gnl|mm7|chr10 (80498365-80498503) | |
| 399-529, gnl|Mm7|chr10 (80498498-80498369) | |
| 399-529, gnl|monDom2|scaffold_75 (3827046-3827174) | |
| 399-529, gnl|panTro1|chr20 (2170631-2170770) | |
| 399-529, gnl|rheMac2|chr19 (1896430-1896569) | |
| 399-529, gnl|rn3|chr7 (10514484-10514346) | |
| 399-529, gnl|tetNig1|chr1 (10546389-10546516) | |
| 784-989, gnl|bosTau2|chr7 (18225509-18225720) | |
| 784-989, gnl|Hg17|chr19 (2053081-2052855) | |
| 1371-1698, gnl|bosTau2|chr7 (18226154-18226478) | |
| 1371-1698, gnl|canFam2|chr20 (60072796-60072551) | |
| 1371-1698, gnl|dasNov1|scaffold_23528 (54533-54783) | |
| 1371-1698, gnl|galGal2|chr28 (1135130-1134852) | |
| 1371-1698, gnl|hg17|chr19 (2051998-2052245) | |
| 1371-1698, gnl|Hg17|chr19 (2052343-2051996) | |
| 1371-1698, gnl|mm7|chr10 (80496577-80496817) | |
| 1371-1698, gnl|Mm7|chr10 (80496887-80496578) | |
| 1371-1698, gnl|monDom2|scaffold_75 (3819934-3820226) | |
| 1371-1698, gnl|panTro1|chr20 (2162604-2162852) | |
| 1371-1698, gnl|rheMac2|chr19 (1887212-1887460) | |
| 1371-1698, gnl|rn3|chr7 (10516164-10515923) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 44-235, gnl|bosTau2|chr7 (18219245-18219436) | |
| 44-235, gnl|canFam2|chr20 (60067603-60067482) | |
| 44-235, gnl|danRer3|chr22 (18574995-18574874) | |
| 44-235, gnl|echTel1|scaffold_268702 (8258-8137) | |
| 44-235, gnl|fr1|chrUn (161763871-161763989) | |
| 44-235, gnl|galGal2|chr28 (1131285-1131166) | |
| 44-235, gnl|hg17|chr19 (2061702-2061823) | |
| 44-235, gnl|Hg17|chr19 (2061896-2061705) | |
| 44-235, gnl|mm7|chr10 (80499383-80499504) | |
| 44-235, gnl|Mm7|chr10 (80499577-80499386) | |
| 44-235, gnl|monDom2|scaffold_75 (3831054-3831175) | |
| 44-235, gnl|panTro1|chr20 (2172250-2172370) | |
| 44-235, gnl|rheMac2|chr19 (1898038-1898159) | |
| 44-235, gnl|rn3|chr7 (10513125-10513004) | |
| 44-235, gnl|tetNig1|chr1 (10547147-10547268) | |
| 399-529, gnl|bosTau2|chr7 (18220389-18220519) | |
| 399-529, gnl|canFam2|chr20 (60068704-60068566) | |
| 399-529, gnl|danRer3|chr22 (18577708-18577582) | |
| 399-529, gnl|echTel1|scaffold_268702 (8877-8741) | |
| 399-529, gnl|fr1|chrUn (161763120-161763256) | |
| 399-529, gnl|galGal2|chr28 (1132888-1132751) | |
| 399-529, gnl|hg17|chr19 (2060083-2060222) | |
| 399-529, gnl|Hg17|chr19 (2060217-2060087) | |
| 399-529, gnl|mm7|chr10 (80498365-80498503) | |
| 399-529, gnl|Mm7|chr10 (80498498-80498369) | |
| 399-529, gnl|monDom2|scaffold_75 (3827046-3827174) | |
| 399-529, gnl|panTro1|chr20 (2170631-2170770) | |
| 399-529, gnl|rheMac2|chr19 (1896430-1896569) | |
| 399-529, gnl|rn3|chr7 (10514484-10514346) | |
| 399-529, gnl|tetNig1|chr1 (10546389-10546516) | |
| 784-989, gnl|bosTau2|chr7 (18225509-18225720) | |
| 784-989, gnl|Hg17|chr19 (2053081-2052855) | |
| 1371-1698, gnl|bosTau2|chr7 (18226154-18226478) | |
| 1371-1698, gnl|canFam2|chr20 (60072796-60072551) | |
| 1371-1698, gnl|dasNov1|scaffold_23528 (54533-54783) | |
| 1371-1698, gnl|galGal2|chr28 (1135130-1134852) | |
| 1371-1698, gnl|hg17|chr19 (2051998-2052245) | |
| 1371-1698, gnl|Hg17|chr19 (2052343-2051996) | |
| 1371-1698, gnl|mm7|chr10 (80496577-80496817) | |
| 1371-1698, gnl|Mm7|chr10 (80496887-80496578) | |
| 1371-1698, gnl|monDom2|scaffold_75 (3819934-3820226) | |
| 1371-1698, gnl|panTro1|chr20 (2162604-2162852) | |
| 1371-1698, gnl|rheMac2|chr19 (1887212-1887460) | |
| 1371-1698, gnl|rn3|chr7 (10516164-10515923) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| fce (0.271592) | |
| pla (0.267344) | |
| ese (0.253004) | |
| cbe (0.239234) | |
| nlu (0.191681) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| nje (0.16592) | |
| csp (0.161186) | |
| fco (0.157208) | |
| hlv (0.139256) | |
| che (0.136314) | |
| eep (0.122564) | |
| pgl (0.118483) | |
| eje (0.0988338) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fce (0.271592) | |
| pla (0.267344) | |
| ese (0.253004) | |
| cbe (0.239234) | |
| nlu (0.191681) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| nje (0.16592) | |
| csp (0.161186) | |
| fco (0.157208) | |
| hlv (0.139256) | |
| che (0.136314) | |
| eep (0.122564) | |
| pgl (0.118483) | |
| eje (0.0988338) |