Non-Coding RNA Search

Ss1.1-Pig4-TMW8045E19.3

Sequence:


               
               GTCAGCTGATTTTTGTATTGCTAAAGTTTGTGAAATTGTACTTTTTCCAAGTGTTTGCAA
CTTTTCTTTAAAAAGTGACCATAATGAGTTGGAATTTCACAAGCTGCGAATAATTCCCTA
GCACCTAGCAAACTCTGAAATCTTCTTTGAAGACTATCTCCTGAAAGTTATTTTGAAATA
GGAAAAAAGAACCATGTTTGAAATAGACCATTTTCTTCTCTTTTTAAAAATCTATTTATA
TTTCCAATTTTTAAACAGCCTTCAAAAAAGTGAGGTGAAAAAAAAAATAATAGGAAGATA
TTTAGGACAGCAAAACTCTGAGTAAGTACATATTCTAATTCTTACAGGGCTTTGAGAGGA
TGAGGGCCATCTTTTTCAGTTTTGTATTATTATCTGTGTGCAAGTTGGTTGTATCTAAGA
TGCCACATTTTGTTAAAATGGTGTTTATTAGCTTGGAAACTGACTCAGCCTCATGTTGCT
CCAAATTAGTGTTTAAGGCTCCCATGAGTTGCAGATAAAAGGATTATTTTAATAAGTAGA
AGGAGATGATTCGCCTTTTGGTTTGTAAATATATAAAAGTGTCTATAAGGTCTTTACTTT
CTGTCAGCATTTATATTAAATGATAAATTAATGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCAGCTGATTTTTGTATTGCTAAAGTTTGTGAAATTGTACTTTTTCCAAGTGTTTGCAA
CTTTTCTTTAAAAAGTGACCATAATGAGTTGGAATTTCACAAGCTGCGAATAATTCCCTA
GCACCTAGCAAACTCTGAAATCTTCTTTGAAGACTATCTCCTGAAAGTTATTTTGAAATA
GGAAAAAAGAACCATGTTTGAAATAGACCATTTTCTTCTCTTTTTAAAAATCTATTTATA
TTTCCAATTTTTAAACAGCCTTCAAAAAAGTGAGGTGAAAAAAAAAATAATAGGAAGATA
TTTAGGACAGCAAAACTCTGAGTAAGTACATATTCTAATTCTTACAGGGCTTTGAGAGGA
TGAGGGCCATCTTTTTCAGTTTTGTATTATTATCTGTGTGCAAGTTGGTTGTATCTAAGA
TGCCACATTTTGTTAAAATGGTGTTTATTAGCTTGGAAACTGACTCAGCCTCATGTTGCT
CCAAATTAGTGTTTAAGGCTCCCATGAGTTGCAGATAAAAGGATTATTTTAATAAGTAGA
AGGAGATGATTCGCCTTTTGGTTTGTAAATATATAAAAGTGTCTATAAGGTCTTTACTTT
CTGTCAGCATTTATATTAAATGATAAATTAATGAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               506-610, - strand, RNAz p=0.656411

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               506-610, - strand, RNAz p=0.656411

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-634, gnl|bosTau2|chr21 (47599835-47599185)
               

               
               3-634, gnl|Hg17|chr1 (170632684-170632013)
               

               
               3-634, gnl|Mm7|chr1 (160936417-160937054)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-634, gnl|bosTau2|chr21 (47599835-47599185)
               

               
               3-634, gnl|Hg17|chr1 (170632684-170632013)
               

               
               3-634, gnl|Mm7|chr1 (160936417-160937054)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               sag (0.182715)
               

               
               eye (0.170503)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.182715)
               

               
               eye (0.170503)

	3-634, gnl\|bosTau2\|chr21 (47599835-47599185)
	3-634, gnl\|Hg17\|chr1 (170632684-170632013)
	3-634, gnl\|Mm7\|chr1 (160936417-160937054)