Non-Coding RNA Search

Ss1.1-Pig4-TMW8045E22.5

Sequence:


               
               CACTGAGCCACAATGGGAACTCCAGGGAACTCCTGATTTTGCTTTTTTAAAAATTCCCAA
AACTCAGGGTAGTAAAAACAATGGCCTCAGCTCTTCACAACCCTTGTTGAAATTGAAGAG
CAGGTTGTCCCAACAAAGCCACCATCACACTCAAACACCCCAAATCATCAAACAGCATCA
TCAGAATAGCACTCTCCTCCAGCAGGAAACCCCTCACATTTGTACATTAAAGATCAGCCT
GGTGCTGCAGTGAGCTCCCTTGAATGTCAAAGCCGTTTCCCAGGGCCTCAGACCCCTTCA
GCATTGCCCTGAGGAGGGAGTTTGCTCCACCCTAGGCCCTGGAATCTGGTGTTATCACTT
CAGCCTGATCTGTGGCTGGAAAGACTTCCCAGACAGCAATTTTGCTTTTAAAAAAAGTGT
TGCAGTAGGACAGCTTCATACTCAACTGTGTGGAGTAGCAAGTGCAGGGTTGTTGTGTTT
GCGGTGCTGGGATGTGGCTTTCAGTGGCATCAATGACCCTCATGTGTTCATCGTCTGGCT
TTTGCTTCTGCAGACACTGCTTTGTATATGATTCAGACAGACTATGAATACATCCTTTTT
TAAATACCTTTCAAATTCTTGGTAAGATAAAATTTTGATAGATGACTGCAGATTTTCCTG
TATTTGCCAAATTAATAAAGACTGCATGACTCCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACTGAGCCACAATGGGAACTCCAGGGAACTCCTGATTTTGCTTTTTTAAAAATTCCCAA
AACTCAGGGTAGTAAAAACAATGGCCTCAGCTCTTCACAACCCTTGTTGAAATTGAAGAG
CAGGTTGTCCCAACAAAGCCACCATCACACTCAAACACCCCAAATCATCAAACAGCATCA
TCAGAATAGCACTCTCCTCCAGCAGGAAACCCCTCACATTTGTACATTAAAGATCAGCCT
GGTGCTGCAGTGAGCTCCCTTGAATGTCAAAGCCGTTTCCCAGGGCCTCAGACCCCTTCA
GCATTGCCCTGAGGAGGGAGTTTGCTCCACCCTAGGCCCTGGAATCTGGTGTTATCACTT
CAGCCTGATCTGTGGCTGGAAAGACTTCCCAGACAGCAATTTTGCTTTTAAAAAAAGTGT
TGCAGTAGGACAGCTTCATACTCAACTGTGTGGAGTAGCAAGTGCAGGGTTGTTGTGTTT
GCGGTGCTGGGATGTGGCTTTCAGTGGCATCAATGACCCTCATGTGTTCATCGTCTGGCT
TTTGCTTCTGCAGACACTGCTTTGTATATGATTCAGACAGACTATGAATACATCCTTTTT
TAAATACCTTTCAAATTCTTGGTAAGATAAAATTTTGATAGATGACTGCAGATTTTCCTG
TATTTGCCAAATTAATAAAGACTGCATGACTCCAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               482-640, + strand, RNAz p=0.933228

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               482-640, + strand, RNAz p=0.933228

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               415-691, gnl|bosTau2|chr2 (82434891-82434619)
               

               
               415-691, gnl|Hg17|chr14 (72759865-72760149)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               415-691, gnl|bosTau2|chr2 (82434891-82434619)
               

               
               415-691, gnl|Hg17|chr14 (72759865-72760149)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               duo (0.172801)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.172801)

	415-691, gnl\|bosTau2\|chr2 (82434891-82434619)
	415-691, gnl\|Hg17\|chr14 (72759865-72760149)