Non-Coding RNA Search

Ss1.1-Pig4-TMW8045F04.3

Sequence:


               
               TAAAGATGATGGCAGGTTCTCAGATACGATAACATGGTATGGATTCAGGTGGAGGGGCTG
TGAAGATGGGGGGGCGGGGGAGTGGGGCTTGAGGTGTTAGAAATAGTGGAAATGAAAGTT
CCAAAGAGGTGGTTTCTGAGGAAGTCAGAGGGCCTGGGGCCAGAGCAGTCAGTAATAGTT
GAACAGGTTACCTGGAAAATAGGTTTGATAGGTACATGTATGCAGTCTGCTTCTGGGTTG
CTGGTAGACATTAAATTTGCACAATATCCCATAGCTGGCTAAGTATTTTAAAATTGTAAG
CATAGGATTTTATATTTGGGGTGAAGAAGCTATCTGGCACATGGTATTAGGGTTTTTTTT
AAGAAGCCAAATTTCACAGTCTTAATAGCTTTTTTAAAAAAAACAGACACCTCATATCCA
GGGTGTGGCCCTCTTGAAAATTCTGGTCATCTCTCCCTTTGAAATCAGCGACATTTCAAA
CGTGGCTAAACGGGGGTGAGAAAACACATGTATGAGTTTCTTGGTATTGATGTGTTCTTC
ACGGAGCCCAGTTGCTTTGGAAGAGCCAAGAAAATCATCAAGATTATCTTTAGGGTCTTT
TAAGGGGTTATCAAGGGTTTACTGGGGTTTTTAAGAACTAATATAATGTCTTGGGTTATT
TCCAGTTCAGAGGAATGTGGAAAAAGGTATGCAATTGTGAAGTGTTTTGTTGTAGTTTAT
TAATATGTAAGGGAAACTTAGACTGTAGACATAAGTAAAACCCAGTGGAGTTTTTGTTTT
CTGTATGTTGTTGGGGAATAAAGTTTTATATAGCAAGCACATGGCCTCCCTGATTTCAAT
ATGCCTTTATTAGGATCTTTCTTAGCCCCTAATTTTGTTGAAATCTTTTTCGCTCTTCCT
CCTGAAAAATAAGCTCCAAAATATAGTTTATTGTATCTTCCATCCTTTAAAAGTTTGTTT
CTTTTTCACTACGGGCAGTTCACACAAGGCAAAAATATTAAACAGTTGGTTTCAGTGTGT
TGTATAACTTTGCTGTATATCAAACTAATTTTTACAAGTTTTCATCCTAAACCTCAAATC
ATGTAATTAATAATTTGCCTGTTTATTTATGACCTAATTGTGATTCTTTTATTAATAAAA
GCTAATGGAAAAGGATCCTTTAAGCTGATGACTAGACCTACAGTTAATTTTCCTGCAGTA
TATGAAGTATTGTACCAGAGTATTAAAAGATATGTAATATTTTATTGATAAATCTATCCT
TTAAAAGGAATACGTTTTAGGATGTCATCATTTTGATGTGAATCATGTAAATGTTGATAA
TATGCACTGTTTATTATACATTTAGTGTTTCAGGAGATTCACTTAATTGCCTTTTTGCCC
ACGTATATTATGTAGTCTTTGCAATTGTTTTAAAAAAAAAGACATTAAAAAAAATAGTTT
ATGTAGAGAAACATTAGTGGATGTTAATTGTCTCCCCACCTGTATTTATGGGTGTTAGTT
CAACTGCTTTGCTAGTTGCAAAGCCGTATTATCAGAGTAAAAGTGAATTTGTAAACTGTA
TGAGAACTAAAAGTTAGGAATAAAACCATTTTCTTATAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAAGATGATGGCAGGTTCTCAGATACGATAACATGGTATGGATTCAGGTGGAGGGGCTG
TGAAGATGGGGGGGCGGGGGAGTGGGGCTTGAGGTGTTAGAAATAGTGGAAATGAAAGTT
CCAAAGAGGTGGTTTCTGAGGAAGTCAGAGGGCCTGGGGCCAGAGCAGTCAGTAATAGTT
GAACAGGTTACCTGGAAAATAGGTTTGATAGGTACATGTATGCAGTCTGCTTCTGGGTTG
CTGGTAGACATTAAATTTGCACAATATCCCATAGCTGGCTAAGTATTTTAAAATTGTAAG
CATAGGATTTTATATTTGGGGTGAAGAAGCTATCTGGCACATGGTATTAGGGTTTTTTTT
AAGAAGCCAAATTTCACAGTCTTAATAGCTTTTTTAAAAAAAACAGACACCTCATATCCA
GGGTGTGGCCCTCTTGAAAATTCTGGTCATCTCTCCCTTTGAAATCAGCGACATTTCAAA
CGTGGCTAAACGGGGGTGAGAAAACACATGTATGAGTTTCTTGGTATTGATGTGTTCTTC
ACGGAGCCCAGTTGCTTTGGAAGAGCCAAGAAAATCATCAAGATTATCTTTAGGGTCTTT
TAAGGGGTTATCAAGGGTTTACTGGGGTTTTTAAGAACTAATATAATGTCTTGGGTTATT
TCCAGTTCAGAGGAATGTGGAAAAAGGTATGCAATTGTGAAGTGTTTTGTTGTAGTTTAT
TAATATGTAAGGGAAACTTAGACTGTAGACATAAGTAAAACCCAGTGGAGTTTTTGTTTT
CTGTATGTTGTTGGGGAATAAAGTTTTATATAGCAAGCACATGGCCTCCCTGATTTCAAT
ATGCCTTTATTAGGATCTTTCTTAGCCCCTAATTTTGTTGAAATCTTTTTCGCTCTTCCT
CCTGAAAAATAAGCTCCAAAATATAGTTTATTGTATCTTCCATCCTTTAAAAGTTTGTTT
CTTTTTCACTACGGGCAGTTCACACAAGGCAAAAATATTAAACAGTTGGTTTCAGTGTGT
TGTATAACTTTGCTGTATATCAAACTAATTTTTACAAGTTTTCATCCTAAACCTCAAATC
ATGTAATTAATAATTTGCCTGTTTATTTATGACCTAATTGTGATTCTTTTATTAATAAAA
GCTAATGGAAAAGGATCCTTTAAGCTGATGACTAGACCTACAGTTAATTTTCCTGCAGTA
TATGAAGTATTGTACCAGAGTATTAAAAGATATGTAATATTTTATTGATAAATCTATCCT
TTAAAAGGAATACGTTTTAGGATGTCATCATTTTGATGTGAATCATGTAAATGTTGATAA
TATGCACTGTTTATTATACATTTAGTGTTTCAGGAGATTCACTTAATTGCCTTTTTGCCC
ACGTATATTATGTAGTCTTTGCAATTGTTTTAAAAAAAAAGACATTAAAAAAAATAGTTT
ATGTAGAGAAACATTAGTGGATGTTAATTGTCTCCCCACCTGTATTTATGGGTGTTAGTT
CAACTGCTTTGCTAGTTGCAAAGCCGTATTATCAGAGTAAAAGTGAATTTGTAAACTGTA
TGAGAACTAAAAGTTAGGAATAAAACCATTTTCTTATAAAAAAAAAAA

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

Help | Less info


               
               807-990, gnl|bosTau2|chr14 (30030044-30030212)
               

               
               807-990, gnl|Hg17|chr12 (111409649-111409822)
               


               
               1027-1153, gnl|bosTau2|chr14 (30029634-30029507)
               

               
               1027-1153, gnl|Hg17|chr12 (111409860-111409985)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               807-990, gnl|bosTau2|chr14 (30030044-30030212)
               

               
               807-990, gnl|Hg17|chr12 (111409649-111409822)
               


               
               1027-1153, gnl|bosTau2|chr14 (30029634-30029507)
               

               
               1027-1153, gnl|Hg17|chr12 (111409860-111409985)

Expressed library(ies): 25 entry(ies)

More info

Expressed library(ies): 25 entry(ies)

Help | Less info


               
               fco (0.628832)
               

               
               fat (0.442282)
               

               
               lin (0.436808)
               

               
               kid (0.389206)
               

               
               ret (0.3862)
               

               
               sin (0.349895)
               

               
               liv (0.292569)
               

               
               ldo (0.291008)
               

               
               ste (0.270416)
               

               
               cty (0.20816)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               mga (0.160205)
               

               
               ctl (0.153069)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               nca (0.136874)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eru (0.120048)

Expressed library(ies): 25 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.628832)
               

               
               fat (0.442282)
               

               
               lin (0.436808)
               

               
               kid (0.389206)
               

               
               ret (0.3862)
               

               
               sin (0.349895)
               

               
               liv (0.292569)
               

               
               ldo (0.291008)
               

               
               ste (0.270416)
               

               
               cty (0.20816)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               mga (0.160205)
               

               
               ctl (0.153069)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               nca (0.136874)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eru (0.120048)

	807-990, gnl\|bosTau2\|chr14 (30030044-30030212)
	807-990, gnl\|Hg17\|chr12 (111409649-111409822)

	1027-1153, gnl\|bosTau2\|chr14 (30029634-30029507)
	1027-1153, gnl\|Hg17\|chr12 (111409860-111409985)

	fco (0.628832)
	fat (0.442282)
	lin (0.436808)
	kid (0.389206)
	ret (0.3862)
	sin (0.349895)
	liv (0.292569)
	ldo (0.291008)
	ste (0.270416)
	cty (0.20816)
	hea (0.204499)
	fcc (0.197785)
	col (0.195008)
	nje (0.16592)
	cki (0.165235)
	mga (0.160205)
	ctl (0.153069)
	lun (0.150489)
	bfe (0.149858)
	ski (0.146735)
	nca (0.136874)
	sug (0.127291)
	bla (0.124347)
	tra (0.123092)
	eru (0.120048)