Non-Coding RNA Search

Ss1.1-Pig4-TMW8045F14.5

Sequence:


               
               GCAGTGACCCGACCCACAGCAGGGACAGCACCAGATCCCCAACCCGCTGTGCCACCAGGG
GACTCCTAGTCTCTTCATTCACTTTTAAGTCCAAGGAAGGGTTATTCACACCCCCCAGGC
ACATAGCCCTGAGGTCATAAACGCAGGGGAGAAATAGGAAGCTAGATCTTATCACTGACC
TGCCTTCTAGGTACCAAATCCGCAGTCACTTTCCAGGAAGGGCTTTTTTCTCAGAGAGGA
ATTGTTTGTATTCACAGTTTTTGTGACCTCCTTTTGGTCTTAAACCCCTTTGAACATAAT
TTCGAAAGGAGGAATTGATAGAACTGTTTTCTGGAACCCTTCAGCTGGTGTCATTCTCTC
ATCTGCCAATGCGCTCTTGTTTGTTTTGCTGGGCGGGGGGGTTGCCGTAAGAGAAAAAGT
AATGGATAATTTCATCCACTGCCTTTACTTGGGTTGAGTGTGGTTCTTCAAAACCTCCAT
AATGGGACTCAAAGTGGGGCCCCTTTTGGGTTCCCGGTGGTATGTTTGGAAAGACAAAGG
AAGTATGTTTGAGCATGTCTGGGAACCATGGTGCTGAAAGCTTGGGGATCTGACTATTTC
AAAAGAATCCGAAGCCTGGGTTTTATTTTTCAGAAATACAATTTATTGTATAACATCAGA
AGATATGATTTCTAGGACTCAAGCCACAAGCCAGAGTTGGTTTACGGCTGTGTCAGCTTT
GAAATCAAGACAAAGCCGGGCTCAACGTTCAGGCGTCCCTGTTTTGAGAATAAATAGGCA
CAGGGAATGCATGTGAATAATAGTAGGTAGAAATCAAGTTTAGACCTTGATCAAAAAAAA
AAAATCTGTATATTGGTTGAAAATGATAACCCTTGATTCAGCTTGTTCCATTTGATGTTT
CAAAAGTTGCAGGAATTATTTTTGCAATGACTGGATAGTACTTGGGTGTTATCTGCTTTT
CAAAAATAAAGTCTTTGGTTCACTCTGTGAACTATTTTATCTCTCTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGTGACCCGACCCACAGCAGGGACAGCACCAGATCCCCAACCCGCTGTGCCACCAGGG
GACTCCTAGTCTCTTCATTCACTTTTAAGTCCAAGGAAGGGTTATTCACACCCCCCAGGC
ACATAGCCCTGAGGTCATAAACGCAGGGGAGAAATAGGAAGCTAGATCTTATCACTGACC
TGCCTTCTAGGTACCAAATCCGCAGTCACTTTCCAGGAAGGGCTTTTTTCTCAGAGAGGA
ATTGTTTGTATTCACAGTTTTTGTGACCTCCTTTTGGTCTTAAACCCCTTTGAACATAAT
TTCGAAAGGAGGAATTGATAGAACTGTTTTCTGGAACCCTTCAGCTGGTGTCATTCTCTC
ATCTGCCAATGCGCTCTTGTTTGTTTTGCTGGGCGGGGGGGTTGCCGTAAGAGAAAAAGT
AATGGATAATTTCATCCACTGCCTTTACTTGGGTTGAGTGTGGTTCTTCAAAACCTCCAT
AATGGGACTCAAAGTGGGGCCCCTTTTGGGTTCCCGGTGGTATGTTTGGAAAGACAAAGG
AAGTATGTTTGAGCATGTCTGGGAACCATGGTGCTGAAAGCTTGGGGATCTGACTATTTC
AAAAGAATCCGAAGCCTGGGTTTTATTTTTCAGAAATACAATTTATTGTATAACATCAGA
AGATATGATTTCTAGGACTCAAGCCACAAGCCAGAGTTGGTTTACGGCTGTGTCAGCTTT
GAAATCAAGACAAAGCCGGGCTCAACGTTCAGGCGTCCCTGTTTTGAGAATAAATAGGCA
CAGGGAATGCATGTGAATAATAGTAGGTAGAAATCAAGTTTAGACCTTGATCAAAAAAAA
AAAATCTGTATATTGGTTGAAAATGATAACCCTTGATTCAGCTTGTTCCATTTGATGTTT
CAAAAGTTGCAGGAATTATTTTTGCAATGACTGGATAGTACTTGGGTGTTATCTGCTTTT
CAAAAATAAAGTCTTTGGTTCACTCTGTGAACTATTTTATCTCTCTAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               682-794, - strand, RNAz p=0.687286

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               682-794, - strand, RNAz p=0.687286

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               67-997, gnl|bosTau2|chr25 (9527574-9526644)
               

               
               67-997, gnl|Hg17|chr16 (11550432-11549348)
               

               
               67-997, gnl|Mm7|chr16 (10639705-10638712)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               67-997, gnl|bosTau2|chr25 (9527574-9526644)
               

               
               67-997, gnl|Hg17|chr16 (11550432-11549348)
               

               
               67-997, gnl|Mm7|chr16 (10639705-10638712)

Expressed library(ies): 14 entry(ies)

More info

Expressed library(ies): 14 entry(ies)

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               cmu (0.372787)
               

               
               sme (0.305437)
               

               
               nbm (0.198649)
               

               
               fbs (0.175346)
               

               
               cut (0.169924)
               

               
               csp (0.161186)
               

               
               spl (0.143184)
               

               
               cov (0.132153)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               clu (0.119646)
               

               
               jej (0.0989218)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.372787)
               

               
               sme (0.305437)
               

               
               nbm (0.198649)
               

               
               fbs (0.175346)
               

               
               cut (0.169924)
               

               
               csp (0.161186)
               

               
               spl (0.143184)
               

               
               cov (0.132153)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               clu (0.119646)
               

               
               jej (0.0989218)

	67-997, gnl\|bosTau2\|chr25 (9527574-9526644)
	67-997, gnl\|Hg17\|chr16 (11550432-11549348)
	67-997, gnl\|Mm7\|chr16 (10639705-10638712)

	cmu (0.372787)
	sme (0.305437)
	nbm (0.198649)
	fbs (0.175346)
	cut (0.169924)
	csp (0.161186)
	spl (0.143184)
	cov (0.132153)
	sug (0.127291)
	thg (0.126791)
	ese (0.126502)
	cly (0.120642)
	clu (0.119646)
	jej (0.0989218)