Ss1.1-Pig4-TMW8045G10.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCGGCTACTCTGGAGTCATCCGAGGAGGACACGCTGCTGAACTTTGTGCGAGTTTTGGA GAAGCGAGATGGCACGGTGTTACGACTGCAGCAGTATGGCTCCGGCGGCGTGGGTTGCGT TGTTTGGGACGCTGCCATTGTCCTTTCTAAATACCTGGAAACGCCCGGGTTTTCCGGCGA TGGGGCCCACACTCTGAGCCAGCGGTCGGTGCTGGAGCTGGGCTCTGGCACCGGGGCGGT GGGGCTCATGGCTGCTACCCTCGGGGCAGATGTCATAGTCACCGATCTTGAGGAATTGCA GGACTTACTGAAGATGAATATTAATATGAACAAGCATCTTGTCACTGGTTCTATTCAAGC CAAGGTACTGAAATGGGGGGAAGAAATAGAAGACTTTCCTTCTCCACCAGACTACATACT GATGGCTGACTGCATATACTACGAAGAGTCTTTGGAGCCACTTGTGAAAACCCTAAAAGA TCTCAGTGGATCCGATACTTGTATTATATGTTGTTACGAACAACGAACAATGGGAAAAAA TCCAGAAATTGAGAAAAAGTATTTTGAGCTCCTTCAATTAGACTTTGACTTTGAAAAAAT TCCTTTGGAAAAACATGATGAAGAATATCGAAGTGAAGATATTCACATTTTATACATCAG AAAGAAAAAATCGAAATTTCCATCATGAAATCTTCTGGTAAGCAAACGATTTGAATGGAG CATGTGAATACAACATGGGAAGATTGTGTTTACAGATTTTTCCAGCATGTCCTTAGGGAT CTGATACATAGACAACCACCATGGGCTGCCTGCAATACAAAAGATGACTGCCTGCCTGCC TGCCTACCAGTGGGACTGAAATAGCTCAGCATCAAGTTCTGTTTAAAAGAAACATTGTGT GTCAGCCACTCCTCAAATAAAAATAGGTACTGAGGTTAGCCTAAAGTCTGCCAGAAATCG ACAGTGAAATAGCATGGTTGACTTGGCATATTTTCAGGAAACTAGAGATAAGTTGATCCA GTTTCTAAAGAGAGGTATCTAGTACTATTTAATAATGTTTAAATTCAAATCAGTAAATTT TAGTTTGTCTTCAAAATAAATTTAAAAGAAGGTTTTCAAACATGTATACAATGCTTTTTA TCAAATGTGTCTTCCACTTCATTGCTTTTAAGATAGCTTTAATATTTAAGTGTTCTTTTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCGGCTACTCTGGAGTCATCCGAGGAGGACACGCTGCTGAACTTTGTGCGAGTTTTGGA GAAGCGAGATGGCACGGTGTTACGACTGCAGCAGTATGGCTCCGGCGGCGTGGGTTGCGT TGTTTGGGACGCTGCCATTGTCCTTTCTAAATACCTGGAAACGCCCGGGTTTTCCGGCGA TGGGGCCCACACTCTGAGCCAGCGGTCGGTGCTGGAGCTGGGCTCTGGCACCGGGGCGGT GGGGCTCATGGCTGCTACCCTCGGGGCAGATGTCATAGTCACCGATCTTGAGGAATTGCA GGACTTACTGAAGATGAATATTAATATGAACAAGCATCTTGTCACTGGTTCTATTCAAGC CAAGGTACTGAAATGGGGGGAAGAAATAGAAGACTTTCCTTCTCCACCAGACTACATACT GATGGCTGACTGCATATACTACGAAGAGTCTTTGGAGCCACTTGTGAAAACCCTAAAAGA TCTCAGTGGATCCGATACTTGTATTATATGTTGTTACGAACAACGAACAATGGGAAAAAA TCCAGAAATTGAGAAAAAGTATTTTGAGCTCCTTCAATTAGACTTTGACTTTGAAAAAAT TCCTTTGGAAAAACATGATGAAGAATATCGAAGTGAAGATATTCACATTTTATACATCAG AAAGAAAAAATCGAAATTTCCATCATGAAATCTTCTGGTAAGCAAACGATTTGAATGGAG CATGTGAATACAACATGGGAAGATTGTGTTTACAGATTTTTCCAGCATGTCCTTAGGGAT CTGATACATAGACAACCACCATGGGCTGCCTGCAATACAAAAGATGACTGCCTGCCTGCC TGCCTACCAGTGGGACTGAAATAGCTCAGCATCAAGTTCTGTTTAAAAGAAACATTGTGT GTCAGCCACTCCTCAAATAAAAATAGGTACTGAGGTTAGCCTAAAGTCTGCCAGAAATCG ACAGTGAAATAGCATGGTTGACTTGGCATATTTTCAGGAAACTAGAGATAAGTTGATCCA GTTTCTAAAGAGAGGTATCTAGTACTATTTAATAATGTTTAAATTCAAATCAGTAAATTT TAGTTTGTCTTCAAAATAAATTTAAAAGAAGGTTTTCAAACATGTATACAATGCTTTTTA TCAAATGTGTCTTCCACTTCATTGCTTTTAAGATAGCTTTAATATTTAAGTGTTCTTTTA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 153-270, + strand, RNAz p=0.512178 | |
| 451-568, + strand, RNAz p=0.541108 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 153-270, + strand, RNAz p=0.512178 | |
| 451-568, + strand, RNAz p=0.541108 |
| Homologous human UTR: 2 entry(ies) | More info |
| Homologous human UTR: 2 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of AK129564, + | |
| 5' of BX247997, + |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 1-270, gnl|bosTau2|chr10 (27512611-27512342) | |
| 1-270, gnl|Hg17|chr14 (49653018-49652749) | |
| 1-270, gnl|Mm7|chr12 (67524123-67523854) | |
| 443-568, gnl|bosTau2|chr10 (27511102-27510977) | |
| 443-568, gnl|canFam2|chr8 (29641100-29641230) | |
| 443-568, gnl|canFam2|chr8 (29641109-29641228) | |
| 443-568, gnl|danRer3|chrUn (183106832-183106963) | |
| 443-568, gnl|danRer3|chrUn (183106842-183106961) | |
| 443-568, gnl|dasNov1|scaffold_50449 (4525-4655) | |
| 443-568, gnl|dasNov1|scaffold_50449 (4537-4653) | |
| 443-568, gnl|fr1|chrUn (123817096-123816968) | |
| 443-568, gnl|galGal2|chr5 (54399512-54399642) | |
| 443-568, gnl|galGal2|chr5 (54399521-54399630) | |
| 443-568, gnl|hg17|chr1 (37917099-37917218) | |
| 443-568, gnl|hg17|chr14 (49650745-49650875) | |
| 443-568, gnl|Hg17|chr14 (49650878-49650753) | |
| 443-568, gnl|loxAfr1|scaffold_91239 (4593-4463) | |
| 443-568, gnl|loxAfr1|scaffold_91239 (4576-4465) | |
| 443-568, gnl|mm7|chr12 (67522244-67522379) | |
| 443-568, gnl|mm7|chr12 (67522258-67522377) | |
| 443-568, gnl|Mm7|chr12 (67522382-67522257) | |
| 443-568, gnl|monDom2|scaffold_8 (88620997-88620867) | |
| 443-568, gnl|monDom2|scaffold_8 (88620988-88620869) | |
| 443-568, gnl|oryCun1|scaffold_172676 (85423-85536) | |
| 443-568, gnl|oryCun1|scaffold_180551 (52159-52030) | |
| 443-568, gnl|panTro1|chr1 (38758471-38758590) | |
| 443-568, gnl|panTro1|chr15 (49060860-49060990) | |
| 443-568, gnl|rheMac2|chr7 (113176651-113176781) | |
| 443-568, gnl|rheMac2|chr7 (113176660-113176779) | |
| 443-568, gnl|rn3|chr6 (91609912-91610047) | |
| 443-568, gnl|rn3|chr6 (91609926-91610045) | |
| 443-568, gnl|tetNig1|chr10 (5127925-5127800) | |
| 443-568, gnl|xenTro1|scaffold_1016 (244545-244416) | |
| 697-1200, gnl|bosTau2|chr10 (27507691-27507180) | |
| 697-1200, gnl|Hg17|chr14 (49646129-49645631) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-270, gnl|bosTau2|chr10 (27512611-27512342) | |
| 1-270, gnl|Hg17|chr14 (49653018-49652749) | |
| 1-270, gnl|Mm7|chr12 (67524123-67523854) | |
| 443-568, gnl|bosTau2|chr10 (27511102-27510977) | |
| 443-568, gnl|canFam2|chr8 (29641100-29641230) | |
| 443-568, gnl|canFam2|chr8 (29641109-29641228) | |
| 443-568, gnl|danRer3|chrUn (183106832-183106963) | |
| 443-568, gnl|danRer3|chrUn (183106842-183106961) | |
| 443-568, gnl|dasNov1|scaffold_50449 (4525-4655) | |
| 443-568, gnl|dasNov1|scaffold_50449 (4537-4653) | |
| 443-568, gnl|fr1|chrUn (123817096-123816968) | |
| 443-568, gnl|galGal2|chr5 (54399512-54399642) | |
| 443-568, gnl|galGal2|chr5 (54399521-54399630) | |
| 443-568, gnl|hg17|chr1 (37917099-37917218) | |
| 443-568, gnl|hg17|chr14 (49650745-49650875) | |
| 443-568, gnl|Hg17|chr14 (49650878-49650753) | |
| 443-568, gnl|loxAfr1|scaffold_91239 (4593-4463) | |
| 443-568, gnl|loxAfr1|scaffold_91239 (4576-4465) | |
| 443-568, gnl|mm7|chr12 (67522244-67522379) | |
| 443-568, gnl|mm7|chr12 (67522258-67522377) | |
| 443-568, gnl|Mm7|chr12 (67522382-67522257) | |
| 443-568, gnl|monDom2|scaffold_8 (88620997-88620867) | |
| 443-568, gnl|monDom2|scaffold_8 (88620988-88620869) | |
| 443-568, gnl|oryCun1|scaffold_172676 (85423-85536) | |
| 443-568, gnl|oryCun1|scaffold_180551 (52159-52030) | |
| 443-568, gnl|panTro1|chr1 (38758471-38758590) | |
| 443-568, gnl|panTro1|chr15 (49060860-49060990) | |
| 443-568, gnl|rheMac2|chr7 (113176651-113176781) | |
| 443-568, gnl|rheMac2|chr7 (113176660-113176779) | |
| 443-568, gnl|rn3|chr6 (91609912-91610047) | |
| 443-568, gnl|rn3|chr6 (91609926-91610045) | |
| 443-568, gnl|tetNig1|chr10 (5127925-5127800) | |
| 443-568, gnl|xenTro1|scaffold_1016 (244545-244416) | |
| 697-1200, gnl|bosTau2|chr10 (27507691-27507180) | |
| 697-1200, gnl|Hg17|chr14 (49646129-49645631) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| lyg (0.266205) | |
| cbe (0.239234) | |
| ece (0.229305) | |
| spc (0.226732) | |
| fco (0.157208) | |
| lun (0.150489) | |
| fat (0.147427) | |
| ski (0.146735) | |
| ova (0.129132) | |
| sug (0.127291) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lyg (0.266205) | |
| cbe (0.239234) | |
| ece (0.229305) | |
| spc (0.226732) | |
| fco (0.157208) | |
| lun (0.150489) | |
| fat (0.147427) | |
| ski (0.146735) | |
| ova (0.129132) | |
| sug (0.127291) |