Ss1.1-Pig4-TMW8045G18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAATCGAGAGTGATAATCTGTAAAAGCACCATGTCATCAGCGGAGATTGTTGCTGTAGAC CCTGATGAACCCATACATGGCCCACCCTTCGACTTCACTTTGGATGGTGTTTCTGATTCA GATGTATTTAGAATGTGGAGACTGACAAAAATTAACGATACAGCAGCACGTCTTTCCTAT CAGAATGACCCTCAGTTTGGACAATACACAGTACCTGTGAGAGTTACGGATAGACTTGGC CAGTCACGCATCACTCAGTTAGACGTTGTATTATGTGACTGTATTACTGTAAATGACTGT GACATTCGTGCAAGTCCGATTGGTGGCAACGGAGGAGTGATACTTGGAACGTGGGCCATC CTTGCAATATTATTGGGCATAGCATTGCTATTTTGTATCCTGTTTACCTTAGTCTGTGGG GCTACTGGGACAGCCAAAAAACCAAAAGTATTCCCTGATGATTTAGCCCAGCAGAACCTC ATCGTGTCAAACACTGAAGCTCCAGGCGATGACAAAGTGTATTCCACGAATGGTTTCACC ACCCATACCATGGGCGGTTCTGCCCAGGGAATTTGTGGCACCATGGGATCTGGAGTGAAA AATGGAGGACAGGAGACGATTGAAATGGTGAAAGGAGGGCACCAGACCTTGGAGTCCTGC CAGGGGGCTGGGCATCACCACACCCTGGAATCGTGTCGGGGAGGTGGACAGCACACCCTG GATTCCTGCAGAGGAGGACAAATAGAGACGGACCACTGCAAATACACTTGCTCCGAGTGG TACAGTTACACGCAGCCCCGTCTTGGCGAAAAGGTCCGGCTGTGTAATCAGGATGACAGT CATGCGCACGCTCAAGACTATGTCCTTACATATAAATATGAAGGAAGAGGATCAGCGGCT GGTTCTGTGGGTTGTTGCAGTGAACGGCAAGAAGAAGATGGGCTTGAGTTTTTGGATCAT TTGGAACCCAAATTTAGGACACTAGCAGAAACATGCATGAAGAGATGAGCGTGTTCTAAT TTGTCTACAGACGCCAGTAGCTTTATTGTCTTTTGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAATCGAGAGTGATAATCTGTAAAAGCACCATGTCATCAGCGGAGATTGTTGCTGTAGAC CCTGATGAACCCATACATGGCCCACCCTTCGACTTCACTTTGGATGGTGTTTCTGATTCA GATGTATTTAGAATGTGGAGACTGACAAAAATTAACGATACAGCAGCACGTCTTTCCTAT CAGAATGACCCTCAGTTTGGACAATACACAGTACCTGTGAGAGTTACGGATAGACTTGGC CAGTCACGCATCACTCAGTTAGACGTTGTATTATGTGACTGTATTACTGTAAATGACTGT GACATTCGTGCAAGTCCGATTGGTGGCAACGGAGGAGTGATACTTGGAACGTGGGCCATC CTTGCAATATTATTGGGCATAGCATTGCTATTTTGTATCCTGTTTACCTTAGTCTGTGGG GCTACTGGGACAGCCAAAAAACCAAAAGTATTCCCTGATGATTTAGCCCAGCAGAACCTC ATCGTGTCAAACACTGAAGCTCCAGGCGATGACAAAGTGTATTCCACGAATGGTTTCACC ACCCATACCATGGGCGGTTCTGCCCAGGGAATTTGTGGCACCATGGGATCTGGAGTGAAA AATGGAGGACAGGAGACGATTGAAATGGTGAAAGGAGGGCACCAGACCTTGGAGTCCTGC CAGGGGGCTGGGCATCACCACACCCTGGAATCGTGTCGGGGAGGTGGACAGCACACCCTG GATTCCTGCAGAGGAGGACAAATAGAGACGGACCACTGCAAATACACTTGCTCCGAGTGG TACAGTTACACGCAGCCCCGTCTTGGCGAAAAGGTCCGGCTGTGTAATCAGGATGACAGT CATGCGCACGCTCAAGACTATGTCCTTACATATAAATATGAAGGAAGAGGATCAGCGGCT GGTTCTGTGGGTTGTTGCAGTGAACGGCAAGAAGAAGATGGGCTTGAGTTTTTGGATCAT TTGGAACCCAAATTTAGGACACTAGCAGAAACATGCATGAAGAGATGAGCGTGTTCTAAT TTGTCTACAGACGCCAGTAGCTTTATTGTCTTTTGT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 157-397, gnl|bosTau2|chr24 (20417944-20417704) | |
| 157-397, gnl|canFam2|chr7 (61376913-61376668) | |
| 157-397, gnl|dasNov1|scaffold_1820 (166813-167058) | |
| 157-397, gnl|echTel1|scaffold_258672 (8053-8298) | |
| 157-397, gnl|galGal2|chr2 (105140642-105140875) | |
| 157-397, gnl|hg17|chr18 (26905564-26905809) | |
| 157-397, gnl|Hg17|chr18 (26905806-26905566) | |
| 157-397, gnl|loxAfr1|scaffold_2841 (71155-71397) | |
| 157-397, gnl|mm7|chr18 (20408637-20408882) | |
| 157-397, gnl|Mm7|chr18 (20408879-20408639) | |
| 157-397, gnl|monDom2|scaffold_4 (125347129-125346884) | |
| 157-397, gnl|oryCun1|scaffold_139103 (749-995) | |
| 157-397, gnl|panTro1|chr17 (22802404-22802649) | |
| 157-397, gnl|rheMac2|chr18 (24016099-24016344) | |
| 157-397, gnl|rn3|chr18 (11933406-11933651) | |
| 157-397, gnl|xenTro1|scaffold_102 (1164048-1164306) | |
| 519-810, gnl|bosTau2|chr24 (20415562-20415271) | |
| 519-810, gnl|Hg17|chr18 (26903116-26902858) | |
| 519-810, gnl|Mm7|chr18 (20406689-20406428) | |
| 820-1006, gnl|bosTau2|chr24 (20343409-20343223) | |
| 820-1006, gnl|canFam2|chr7 (61437525-61437320) | |
| 820-1006, gnl|dasNov1|scaffold_1820 (81280-81483) | |
| 820-1006, gnl|echTel1|scaffold_234297 (8341-8546) | |
| 820-1006, gnl|galGal2|chr2 (105136442-105136643) | |
| 820-1006, gnl|hg17|chr18 (26828140-26828345) | |
| 820-1006, gnl|Hg17|chr18 (26828327-26828141) | |
| 820-1006, gnl|loxAfr1|scaffold_12916 (18187-17982) | |
| 820-1006, gnl|mm7|chr18 (20336739-20336944) | |
| 820-1006, gnl|Mm7|chr18 (20336926-20336740) | |
| 820-1006, gnl|monDom2|scaffold_4 (125448151-125447943) | |
| 820-1006, gnl|oryCun1|scaffold_202858 (179361-179562) | |
| 820-1006, gnl|panTro1|chr17 (22724724-22724929) | |
| 820-1006, gnl|rheMac2|chr18 (23936849-23937054) | |
| 820-1006, gnl|rn3|chr18 (11857718-11857923) | |
| 820-1006, gnl|xenTro1|scaffold_102 (1161428-1161633) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 157-397, gnl|bosTau2|chr24 (20417944-20417704) | |
| 157-397, gnl|canFam2|chr7 (61376913-61376668) | |
| 157-397, gnl|dasNov1|scaffold_1820 (166813-167058) | |
| 157-397, gnl|echTel1|scaffold_258672 (8053-8298) | |
| 157-397, gnl|galGal2|chr2 (105140642-105140875) | |
| 157-397, gnl|hg17|chr18 (26905564-26905809) | |
| 157-397, gnl|Hg17|chr18 (26905806-26905566) | |
| 157-397, gnl|loxAfr1|scaffold_2841 (71155-71397) | |
| 157-397, gnl|mm7|chr18 (20408637-20408882) | |
| 157-397, gnl|Mm7|chr18 (20408879-20408639) | |
| 157-397, gnl|monDom2|scaffold_4 (125347129-125346884) | |
| 157-397, gnl|oryCun1|scaffold_139103 (749-995) | |
| 157-397, gnl|panTro1|chr17 (22802404-22802649) | |
| 157-397, gnl|rheMac2|chr18 (24016099-24016344) | |
| 157-397, gnl|rn3|chr18 (11933406-11933651) | |
| 157-397, gnl|xenTro1|scaffold_102 (1164048-1164306) | |
| 519-810, gnl|bosTau2|chr24 (20415562-20415271) | |
| 519-810, gnl|Hg17|chr18 (26903116-26902858) | |
| 519-810, gnl|Mm7|chr18 (20406689-20406428) | |
| 820-1006, gnl|bosTau2|chr24 (20343409-20343223) | |
| 820-1006, gnl|canFam2|chr7 (61437525-61437320) | |
| 820-1006, gnl|dasNov1|scaffold_1820 (81280-81483) | |
| 820-1006, gnl|echTel1|scaffold_234297 (8341-8546) | |
| 820-1006, gnl|galGal2|chr2 (105136442-105136643) | |
| 820-1006, gnl|hg17|chr18 (26828140-26828345) | |
| 820-1006, gnl|Hg17|chr18 (26828327-26828141) | |
| 820-1006, gnl|loxAfr1|scaffold_12916 (18187-17982) | |
| 820-1006, gnl|mm7|chr18 (20336739-20336944) | |
| 820-1006, gnl|Mm7|chr18 (20336926-20336740) | |
| 820-1006, gnl|monDom2|scaffold_4 (125448151-125447943) | |
| 820-1006, gnl|oryCun1|scaffold_202858 (179361-179562) | |
| 820-1006, gnl|panTro1|chr17 (22724724-22724929) | |
| 820-1006, gnl|rheMac2|chr18 (23936849-23937054) | |
| 820-1006, gnl|rn3|chr18 (11857718-11857923) | |
| 820-1006, gnl|xenTro1|scaffold_102 (1161428-1161633) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.133672) | |
| pgl (0.118483) | |
| jej (0.0989218) |