Ss1.1-Pig4-TMW8045G20.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACTGAGTAGAGCTGAGTCGGGTGCTGTAGCTGGTGGGAGGAAGTCCTGAAGGCCATGGAC ACTCAGCCACTGGGATCTCCGAGATGAGCAGCAGCTGCTCAGGGCTGAGCAGGGTCCTGG TGGCCGTGGCTGCAGCCCTGGTGTCTGCCTCCTCTCCCTGCCCCCAGGCCTGGGGCCCCC CAGGGGTCCAATATGGGCAGCCTGGCAGGTCCATGACGCTGTGTTGCCCTGGAGTGACTG CTGGGGCCCCGGTGTCCTGGTTTCGGGACGGGGAGACAAGGCTGCTCCAGGGACCCGACT CTGGGCTCGGCCACGAACTGGTCCTGGCCCGGGCAGAAAGCACGGACGAGGGCACTTATA TCTGCCGGACCCTGGATGGTGCACTTGGGGGCATGGTGACCCTGCAGCTGGGCTACCCCC CAGCCCGCCCTGTGGTGTCCTGCCGAGCGGCTGACTATGAGAACTTCTCCTGCACTTGGA GTCCCAGCCAGGTTAGCGGCTTACCCACCCGCTACCTCACCTCCTACAGGAAGAAGACCG TGCCAGGAGCTGATGGCCAAAGGATGAGTCCATCCACAGGGCCCTGGCCATGCCCACAGG AACCCCCAGGGGCTGCCCGCTGTGTAGTCCATGGAGCAGAGTTCTGGAGCCAATACCGGA TCAATGTGACCGAAGTGAACCCCCTGGGGGCCAGCACACGCCTGCTGGATGTGAGCCTGC AGAGCATCTTACGCCCTGACCCACCCCAGGGGCTGCGGGTAGAGTCGGTACCTGGCTATC CTCGCCGCCTGCGTGCTAGCTGGACATACCCTGCCTCCTGGCCCCGCCAGCCCCACTTCC TGCTCAAGTTCCGGCTGCAGTACCGTCCAGTGCAGCATCCAGCCTGGTCCACGGTGGAGC CGGCTGGATTGGAGGAAGTGATCACGGACGCCGTGGCTGGGCTGCCCCATGCCGTGCGGG TCAGTGCCCGGGACTTTCTGGACGCAGGCACCTGGAGCGCCTGGAGCCCGGAAGCCTGGG GGACTCCGAGCACCGGGCTCCTACTGAAGGAAATACCAGCTGGGAACCAGCAACACTCAC AGCCAGAGGAAGAACCTCAGGCGGACAGCCCCACTCCCCCAAGACCGTCCCTCCTACCTG ACCCGCGGCCACTTGACCACAGAGACCCCCTGGAGCAGGTGGCTGTGCTGGCATCTTTGG GAATCTTCTCTCTCCTGGGACTGGTGGCTGGGGCCCTGGCATTGGGGCTCTGGCTGAGGC TGAGACCAGATGGGAAGGACGGACCCCCAAAGCCTGGGTTCTTGGCCCCCATGATTCCAG TGGATAAGCTTCCAGGAGCCCCCAACCTGTAGAGGACCCTGGAGGGCTTCAGCTGACTCC ATCTATAACTCTGTCTTGTTGGTGTGGATGGATGGACAGGACAGTAGATCCCCATGGAGG CGGGTCTCGGCTGGAAGTTCTGTTTGGAGCCCATTTCTATGAGACTGTTCCAAACCTGCC AGCTAAAAGGTGCCTGGACCTCTGACTTCATCCCAGAGCTGGAGGTCCACCTGAGGAATG TGTGTAGATGTGTATGCTTGTGTCCATGTGTGGCAGTGTATGTGAGGCAGGAAATGTGTG TGCTCTGCATGTATGTAAATAGGTGCCTGGAGTGTGTGTGTGGGTCCTCGGCTCTTGGCC TTGCCCCGGTGGGGGTTGTGAAGGCATGAATAAAGAGAATGAGGAGGTTAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACTGAGTAGAGCTGAGTCGGGTGCTGTAGCTGGTGGGAGGAAGTCCTGAAGGCCATGGAC ACTCAGCCACTGGGATCTCCGAGATGAGCAGCAGCTGCTCAGGGCTGAGCAGGGTCCTGG TGGCCGTGGCTGCAGCCCTGGTGTCTGCCTCCTCTCCCTGCCCCCAGGCCTGGGGCCCCC CAGGGGTCCAATATGGGCAGCCTGGCAGGTCCATGACGCTGTGTTGCCCTGGAGTGACTG CTGGGGCCCCGGTGTCCTGGTTTCGGGACGGGGAGACAAGGCTGCTCCAGGGACCCGACT CTGGGCTCGGCCACGAACTGGTCCTGGCCCGGGCAGAAAGCACGGACGAGGGCACTTATA TCTGCCGGACCCTGGATGGTGCACTTGGGGGCATGGTGACCCTGCAGCTGGGCTACCCCC CAGCCCGCCCTGTGGTGTCCTGCCGAGCGGCTGACTATGAGAACTTCTCCTGCACTTGGA GTCCCAGCCAGGTTAGCGGCTTACCCACCCGCTACCTCACCTCCTACAGGAAGAAGACCG TGCCAGGAGCTGATGGCCAAAGGATGAGTCCATCCACAGGGCCCTGGCCATGCCCACAGG AACCCCCAGGGGCTGCCCGCTGTGTAGTCCATGGAGCAGAGTTCTGGAGCCAATACCGGA TCAATGTGACCGAAGTGAACCCCCTGGGGGCCAGCACACGCCTGCTGGATGTGAGCCTGC AGAGCATCTTACGCCCTGACCCACCCCAGGGGCTGCGGGTAGAGTCGGTACCTGGCTATC CTCGCCGCCTGCGTGCTAGCTGGACATACCCTGCCTCCTGGCCCCGCCAGCCCCACTTCC TGCTCAAGTTCCGGCTGCAGTACCGTCCAGTGCAGCATCCAGCCTGGTCCACGGTGGAGC CGGCTGGATTGGAGGAAGTGATCACGGACGCCGTGGCTGGGCTGCCCCATGCCGTGCGGG TCAGTGCCCGGGACTTTCTGGACGCAGGCACCTGGAGCGCCTGGAGCCCGGAAGCCTGGG GGACTCCGAGCACCGGGCTCCTACTGAAGGAAATACCAGCTGGGAACCAGCAACACTCAC AGCCAGAGGAAGAACCTCAGGCGGACAGCCCCACTCCCCCAAGACCGTCCCTCCTACCTG ACCCGCGGCCACTTGACCACAGAGACCCCCTGGAGCAGGTGGCTGTGCTGGCATCTTTGG GAATCTTCTCTCTCCTGGGACTGGTGGCTGGGGCCCTGGCATTGGGGCTCTGGCTGAGGC TGAGACCAGATGGGAAGGACGGACCCCCAAAGCCTGGGTTCTTGGCCCCCATGATTCCAG TGGATAAGCTTCCAGGAGCCCCCAACCTGTAGAGGACCCTGGAGGGCTTCAGCTGACTCC ATCTATAACTCTGTCTTGTTGGTGTGGATGGATGGACAGGACAGTAGATCCCCATGGAGG CGGGTCTCGGCTGGAAGTTCTGTTTGGAGCCCATTTCTATGAGACTGTTCCAAACCTGCC AGCTAAAAGGTGCCTGGACCTCTGACTTCATCCCAGAGCTGGAGGTCCACCTGAGGAATG TGTGTAGATGTGTATGCTTGTGTCCATGTGTGGCAGTGTATGTGAGGCAGGAAATGTGTG TGCTCTGCATGTATGTAAATAGGTGCCTGGAGTGTGTGTGTGGGTCCTCGGCTCTTGGCC TTGCCCCGGTGGGGGTTGTGAAGGCATGAATAAAGAGAATGAGGAGGTTAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 82-392, - strand, RNAz p=0.78212 | |
| 244-1729, - strand, RNAz p=0.852936 | |
| 1368-1472, - strand, RNAz p=0.645024 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 82-392, - strand, RNAz p=0.78212 | |
| 244-1729, - strand, RNAz p=0.852936 | |
| 1368-1472, - strand, RNAz p=0.645024 |
| Aligned organism(s): 62 entry(ies) | More info |
| Aligned organism(s): 62 entry(ies) | Help | Less info |
| 82-184, gnl|bosTau2|chr8 (41428140-41428242) | |
| 82-184, gnl|canFam2|chr11 (54357565-54358235) | |
| 82-184, gnl|dasNov1|scaffold_5804 (48338-47730) | |
| 82-184, gnl|hg17|chr9 (34645056-34645716) | |
| 82-184, gnl|Hg17|chr9 (34645213-34645315) | |
| 82-184, gnl|mm7|chr4 (41901735-41902234) | |
| 82-184, gnl|Mm7|chr4 (41901885-41901987) | |
| 82-184, gnl|monDom2|scaffold_17 (47267691-47266979) | |
| 82-184, gnl|panTro1|chr11 (35183637-35184289) | |
| 82-184, gnl|rheMac2|chr15 (42868538-42867881) | |
| 82-184, gnl|rn3|chr5 (59193923-59194418) | |
| 244-414, gnl|bosTau2|chr8 (41429819-41429989) | |
| 244-414, gnl|dasNov1|scaffold_5804 (46920-46814) | |
| 244-414, gnl|echTel1|scaffold_122554 (228-117) | |
| 244-414, gnl|hg17|chr9 (34646734-34646845) | |
| 244-414, gnl|Hg17|chr9 (34646735-34646905) | |
| 244-414, gnl|loxAfr1|scaffold_63155 (398-509) | |
| 244-414, gnl|mm7|chr4 (41903012-41903123) | |
| 244-414, gnl|Mm7|chr4 (41903013-41903183) | |
| 244-414, gnl|monDom2|scaffold_17 (47266723-47266603) | |
| 244-414, gnl|panTro1|chr11 (35185305-35185416) | |
| 244-414, gnl|rheMac2|chr15 (42866858-42866747) | |
| 244-414, gnl|rn3|chr5 (59195191-59195302) | |
| 415-530, gnl|bosTau2|chr8 (41430124-41430239) | |
| 415-530, gnl|hg17|chr9 (34646939-34647130) | |
| 415-530, gnl|Hg17|chr9 (34647032-34647147) | |
| 415-530, gnl|loxAfr1|scaffold_63155 (612-803) | |
| 415-530, gnl|mm7|chr4 (41903218-41903410) | |
| 415-530, gnl|Mm7|chr4 (41903312-41903427) | |
| 415-530, gnl|monDom2|scaffold_17 (47266498-47266258) | |
| 415-530, gnl|panTro1|chr11 (35185510-35185701) | |
| 415-530, gnl|rheMac2|chr15 (42866653-42866462) | |
| 415-530, gnl|rn3|chr5 (59195396-59195551) | |
| 561-729, gnl|bosTau2|chr8 (41430505-41430673) | |
| 561-729, gnl|canFam2|chr11 (54359841-54360069) | |
| 561-729, gnl|hg17|chr9 (34647395-34647622) | |
| 561-729, gnl|Hg17|chr9 (34647416-34647584) | |
| 561-729, gnl|mm7|chr4 (41903668-41903891) | |
| 561-729, gnl|Mm7|chr4 (41903689-41903857) | |
| 561-729, gnl|monDom2|scaffold_17 (47265893-47265655) | |
| 561-729, gnl|panTro1|chr11 (35185967-35186194) | |
| 561-729, gnl|rheMac2|chr15 (42866197-42865969) | |
| 561-729, gnl|rn3|chr5 (59195818-59196038) | |
| 732-901, gnl|bosTau2|chr8 (41431359-41431528) | |
| 732-901, gnl|Hg17|chr9 (34648519-34648688) | |
| 732-901, gnl|Mm7|chr4 (41904418-41904587) | |
| 1138-1253, gnl|bosTau2|chr8 (41433291-41433405) | |
| 1138-1253, gnl|canFam2|chr11 (54362739-54362915) | |
| 1138-1253, gnl|dasNov1|scaffold_5804 (43937-43754) | |
| 1138-1253, gnl|echTel1|scaffold_214107 (4104-3922) | |
| 1138-1253, gnl|hg17|chr9 (34650426-34650607) | |
| 1138-1253, gnl|Hg17|chr9 (34650484-34650598) | |
| 1138-1253, gnl|loxAfr1|scaffold_63155 (3921-4101) | |
| 1138-1253, gnl|mm7|chr4 (41906411-41906580) | |
| 1138-1253, gnl|Mm7|chr4 (41906457-41906571) | |
| 1138-1253, gnl|monDom2|scaffold_17 (47262089-47261849) | |
| 1138-1253, gnl|panTro1|chr11 (35188999-35189180) | |
| 1138-1253, gnl|rheMac2|chr15 (42863149-42862968) | |
| 1138-1253, gnl|rn3|chr5 (59198551-59198733) | |
| 1329-1729, gnl|bosTau2|chr8 (41434224-41434631) | |
| 1329-1729, gnl|Hg17|chr9 (34651472-34651878) | |
| 1329-1729, gnl|Mm7|chr4 (41907378-41907774) |
| Aligned organism(s): 62 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 82-184, gnl|bosTau2|chr8 (41428140-41428242) | |
| 82-184, gnl|canFam2|chr11 (54357565-54358235) | |
| 82-184, gnl|dasNov1|scaffold_5804 (48338-47730) | |
| 82-184, gnl|hg17|chr9 (34645056-34645716) | |
| 82-184, gnl|Hg17|chr9 (34645213-34645315) | |
| 82-184, gnl|mm7|chr4 (41901735-41902234) | |
| 82-184, gnl|Mm7|chr4 (41901885-41901987) | |
| 82-184, gnl|monDom2|scaffold_17 (47267691-47266979) | |
| 82-184, gnl|panTro1|chr11 (35183637-35184289) | |
| 82-184, gnl|rheMac2|chr15 (42868538-42867881) | |
| 82-184, gnl|rn3|chr5 (59193923-59194418) | |
| 244-414, gnl|bosTau2|chr8 (41429819-41429989) | |
| 244-414, gnl|dasNov1|scaffold_5804 (46920-46814) | |
| 244-414, gnl|echTel1|scaffold_122554 (228-117) | |
| 244-414, gnl|hg17|chr9 (34646734-34646845) | |
| 244-414, gnl|Hg17|chr9 (34646735-34646905) | |
| 244-414, gnl|loxAfr1|scaffold_63155 (398-509) | |
| 244-414, gnl|mm7|chr4 (41903012-41903123) | |
| 244-414, gnl|Mm7|chr4 (41903013-41903183) | |
| 244-414, gnl|monDom2|scaffold_17 (47266723-47266603) | |
| 244-414, gnl|panTro1|chr11 (35185305-35185416) | |
| 244-414, gnl|rheMac2|chr15 (42866858-42866747) | |
| 244-414, gnl|rn3|chr5 (59195191-59195302) | |
| 415-530, gnl|bosTau2|chr8 (41430124-41430239) | |
| 415-530, gnl|hg17|chr9 (34646939-34647130) | |
| 415-530, gnl|Hg17|chr9 (34647032-34647147) | |
| 415-530, gnl|loxAfr1|scaffold_63155 (612-803) | |
| 415-530, gnl|mm7|chr4 (41903218-41903410) | |
| 415-530, gnl|Mm7|chr4 (41903312-41903427) | |
| 415-530, gnl|monDom2|scaffold_17 (47266498-47266258) | |
| 415-530, gnl|panTro1|chr11 (35185510-35185701) | |
| 415-530, gnl|rheMac2|chr15 (42866653-42866462) | |
| 415-530, gnl|rn3|chr5 (59195396-59195551) | |
| 561-729, gnl|bosTau2|chr8 (41430505-41430673) | |
| 561-729, gnl|canFam2|chr11 (54359841-54360069) | |
| 561-729, gnl|hg17|chr9 (34647395-34647622) | |
| 561-729, gnl|Hg17|chr9 (34647416-34647584) | |
| 561-729, gnl|mm7|chr4 (41903668-41903891) | |
| 561-729, gnl|Mm7|chr4 (41903689-41903857) | |
| 561-729, gnl|monDom2|scaffold_17 (47265893-47265655) | |
| 561-729, gnl|panTro1|chr11 (35185967-35186194) | |
| 561-729, gnl|rheMac2|chr15 (42866197-42865969) | |
| 561-729, gnl|rn3|chr5 (59195818-59196038) | |
| 732-901, gnl|bosTau2|chr8 (41431359-41431528) | |
| 732-901, gnl|Hg17|chr9 (34648519-34648688) | |
| 732-901, gnl|Mm7|chr4 (41904418-41904587) | |
| 1138-1253, gnl|bosTau2|chr8 (41433291-41433405) | |
| 1138-1253, gnl|canFam2|chr11 (54362739-54362915) | |
| 1138-1253, gnl|dasNov1|scaffold_5804 (43937-43754) | |
| 1138-1253, gnl|echTel1|scaffold_214107 (4104-3922) | |
| 1138-1253, gnl|hg17|chr9 (34650426-34650607) | |
| 1138-1253, gnl|Hg17|chr9 (34650484-34650598) | |
| 1138-1253, gnl|loxAfr1|scaffold_63155 (3921-4101) | |
| 1138-1253, gnl|mm7|chr4 (41906411-41906580) | |
| 1138-1253, gnl|Mm7|chr4 (41906457-41906571) | |
| 1138-1253, gnl|monDom2|scaffold_17 (47262089-47261849) | |
| 1138-1253, gnl|panTro1|chr11 (35188999-35189180) | |
| 1138-1253, gnl|rheMac2|chr15 (42863149-42862968) | |
| 1138-1253, gnl|rn3|chr5 (59198551-59198733) | |
| 1329-1729, gnl|bosTau2|chr8 (41434224-41434631) | |
| 1329-1729, gnl|Hg17|chr9 (34651472-34651878) | |
| 1329-1729, gnl|Mm7|chr4 (41907378-41907774) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| cli (0.458435) | |
| elu (0.385356) | |
| nms (0.213858) | |
| mas (0.210305) | |
| eje (0.197668) | |
| eye (0.170503) | |
| cag (0.151194) | |
| lnt (0.142308) | |
| nmm (0.132802) | |
| eep (0.122564) | |
| eru (0.120048) | |
| med (0.116252) | |
| jej (0.0989218) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cli (0.458435) | |
| elu (0.385356) | |
| nms (0.213858) | |
| mas (0.210305) | |
| eje (0.197668) | |
| eye (0.170503) | |
| cag (0.151194) | |
| lnt (0.142308) | |
| nmm (0.132802) | |
| eep (0.122564) | |
| eru (0.120048) | |
| med (0.116252) | |
| jej (0.0989218) |