Ss1.1-Pig4-TMW8045G24.5
|
GTGCCCTTTATGCAGGCACAGTTCTGGCCTCTTCTTAACCCCCACCCCACGCCACGAGAC
TGCAGGGCGCGGTGGCCAGTGGACAGAGGCCAGTGATCGAGGCGCAGCTAATGCCTCTGA
GTTCTGACGCCAGCTTGGGGGCTCCTTCCCAGCTGCCCTGGTTCTGTGTGAAGGGAGGGG
CGTCCCGCCTCGATCCCCTCCGCCCCCAAAGTGGGGGAGGGGTAGTGGGGGCCGGTGGGC
CCTGCGGCTGCCTGGGCCTTTGGAGGAGCCGGTACCGGGAGAGAGAGAGAGAGGTGTCCG
GAAGGATGACCACGATCACGAGACAGGACCTCAACTTTGGTCAAGTGGTGGCCGACGTGC
TTTGCGAGTTCCTGGAGGTGGCCGTGCACCTGATCCTCTACGTGCGTGAGGTCTACCCGG
TGGGCATCTTCCAGAAACGTAAGAAGTACAACGTGCGATCACGAGACAGGACCTCAACTT
TGGTCAAGTGGTGGCCGACGTGCTTTGCGAGTTCCTGGAGGTGGCCGTGCACCTGATCCT
CTACGTGCGTGAGGTCTACCCGGTGGGCATCTTCCAGAAACGTAAGAAGTACAACGTGCC
CGTCCAGATGTCCTGTCACCCGGAGCTGAACCAGTATATCCAGGACACACTGCACTGCGT
CAAGCCGCTCCTGGAGAAGAATGATGTGGAGAAAGTGGTGGTGGTGATTTTGGACAAAGA
GCACCGCCCAGTGGAGAAATTCGTCTTTGAAATCACCCAGCCTCCGCTGCTGTCCATCAG
CTCCGACTCCCTGCTGTCTCACGTGGAGCAGCTGCTCCGAGCCTTCATCCTGAAGATCAG
TGTGTGCGATGCTGTCCTGGACCACAACCCCCCAGGCTGTACCTTCACAGTCTTAGTGCA
CACGAGAGAGGCTGCCACTCGCAACATGGAGAAGATCCAGGTCATCAAGGACTTCCCCTG
GGCAGAGACCCCCGAGCAGGATGTCCACATGCACGACCCCCGACTGATCACCTGACCTTG
CATGACGTCAGACATCTTAAAGATGCAGCTGTACGTGGAAGAGCGAGCTCATAAAAGCAG
CTGAGGGTGTGCCTGCCCCACCCCCCACCCCGTGGATGCCGCAGCTGTCGGACTTCGGGG
GGCCCAGCCTAGGGCAGTGCTGCAGGGCCACCCTGACTCCAAGTGCTCTTATCGCCTCTG
TGTGTGGACCACCCCACCCTCCAGGTTGGGGCTGCTCAGGCCTGGCTGCCTGCATGGAGG
GACTCTCCCAGGAGGGCAGTGAAGGGGGCTGAGACCTCAGTTTCTCAGCCTTCTGGGACC
CGGCTGCCAGTGCTGTCTGTCTCAAATGCTATGCTGTGAGTCGTTTCAATAAAGAGCCCC
CAGGCTGAAAAAAGCTGTCACTACCCGGGGTTGAGGGGGGGCTGCTTCTCTGCCAAAGTG
CTAAGGACTTTGTGCCCTCACCCCTAGACCCAACCCCAGGCTACTTTTATTGAAAACATT
TATTACAACAAGATATCAGAGCTGCGTGACAGTAAGTTCACAGACTGGTGGGTCTGGCCT
AGGCTGGGGCCGGGGCAGGGACCTTATTGCCTGCTGCTGGCTCAGCCCTTGCCTGGAGGT
GACCCTTGGTGCTCGGCTGGCCTGGACAGAGGACAGATGCATGGCTGACTGTCAGGAGGG
CCTCTGGGGAAGGAGTGGGGAAGGGAGGGGGGGTGGCCTCCCTTGGCCCCTGCATGGGCT
AAGGCTGTACGACCGAGGGGGCTGGGCTCCTGCTCATCCTGTGGCTGACGATGATGCTGC
TGTTGGTGACCCGGGGCCCGTACCAGCCTGCCCAGTACTGGGTGTCCTTGCCCCCGTGCT
GGAAGAGGATGTGGCGGACACCTGGAGGGTAATCTGAGAAGGTGTGGGAGACCTCTGTCC
ACCTGGCATCGTTCCACTGAGGGATGGTCACAGGCGGGGGCTCGAAGGAGGCCAGGACGA
TGTAGTCAGCGGAGGCCAGCTGTACTCGGATGTGGTAGGTGCAACCACAGTCTGCTCTGG
CGGCGAACCAGTCCTTGACCACGATGTCTGGCCGGAACTTGTCCAGCAGCTCTTCCCAGT
AGCCCTCAGCTTTAAGGTCTATCAGCTGGGACTTGAGGCACATGCCGTAAGATGTGACAA
AGTACTTCTTGACTTTGGAGTCGGGAAAATCTGTGCCGTGGGCTCCAGGGAGGCTCTCTA
CCTTCCAGTGGTTCCCCCCATTGGAGTCAATTTTCCAGGACGTCATATCATCTTCAGCAC
ACGGGTTGCGCAGGAGGTTCCTGCGGAGGCTGCACAGAAAGTAGAAGACCTTCCAGTCGG
CCACGGGCTGGTCCCAGTCCTCAGCGACGAAGCCCTCACATAGGCATTTGCGCTTCCAGA
GGGTCACGAGGTCAATGAGGTCACGCCAGAGGCTGCAGACGGGGCGGCAGTTCAGCAGCA
GCTGGCGGGCGGGCAGGTGCGTGAACACCTCCAGCAGGATGCTCTCGGGCAGCTGGTTGA
TGCTGACCAGGGCCATGGCTGTGCAGGGCAGGGGGCACACACAAGCCCTCAAACTCCAAA
GTTGGCAAGAAAGCAATGAGTGAGCTCCGGGCTTTCTCTGTAGGTACCAGCACCTGTTTG
CTCACCAGCCTTGGAGTTGTTGGGGAGTCTTCTCTGGATCCAGGTTGAAACCTTCGTGTA
ATGCTAACCTTGTCGCCTGAACGTCTGGAGGTTCCTCCCGGCGGTGGGCGGCTCAGCGGC
GGGGACCCATCTCCTCTCGGCTTC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GTGCCCTTTATGCAGGCACAGTTCTGGCCTCTTCTTAACCCCCACCCCACGCCACGAGAC
TGCAGGGCGCGGTGGCCAGTGGACAGAGGCCAGTGATCGAGGCGCAGCTAATGCCTCTGA
GTTCTGACGCCAGCTTGGGGGCTCCTTCCCAGCTGCCCTGGTTCTGTGTGAAGGGAGGGG
CGTCCCGCCTCGATCCCCTCCGCCCCCAAAGTGGGGGAGGGGTAGTGGGGGCCGGTGGGC
CCTGCGGCTGCCTGGGCCTTTGGAGGAGCCGGTACCGGGAGAGAGAGAGAGAGGTGTCCG
GAAGGATGACCACGATCACGAGACAGGACCTCAACTTTGGTCAAGTGGTGGCCGACGTGC
TTTGCGAGTTCCTGGAGGTGGCCGTGCACCTGATCCTCTACGTGCGTGAGGTCTACCCGG
TGGGCATCTTCCAGAAACGTAAGAAGTACAACGTGCGATCACGAGACAGGACCTCAACTT
TGGTCAAGTGGTGGCCGACGTGCTTTGCGAGTTCCTGGAGGTGGCCGTGCACCTGATCCT
CTACGTGCGTGAGGTCTACCCGGTGGGCATCTTCCAGAAACGTAAGAAGTACAACGTGCC
CGTCCAGATGTCCTGTCACCCGGAGCTGAACCAGTATATCCAGGACACACTGCACTGCGT
CAAGCCGCTCCTGGAGAAGAATGATGTGGAGAAAGTGGTGGTGGTGATTTTGGACAAAGA
GCACCGCCCAGTGGAGAAATTCGTCTTTGAAATCACCCAGCCTCCGCTGCTGTCCATCAG
CTCCGACTCCCTGCTGTCTCACGTGGAGCAGCTGCTCCGAGCCTTCATCCTGAAGATCAG
TGTGTGCGATGCTGTCCTGGACCACAACCCCCCAGGCTGTACCTTCACAGTCTTAGTGCA
CACGAGAGAGGCTGCCACTCGCAACATGGAGAAGATCCAGGTCATCAAGGACTTCCCCTG
GGCAGAGACCCCCGAGCAGGATGTCCACATGCACGACCCCCGACTGATCACCTGACCTTG
CATGACGTCAGACATCTTAAAGATGCAGCTGTACGTGGAAGAGCGAGCTCATAAAAGCAG
CTGAGGGTGTGCCTGCCCCACCCCCCACCCCGTGGATGCCGCAGCTGTCGGACTTCGGGG
GGCCCAGCCTAGGGCAGTGCTGCAGGGCCACCCTGACTCCAAGTGCTCTTATCGCCTCTG
TGTGTGGACCACCCCACCCTCCAGGTTGGGGCTGCTCAGGCCTGGCTGCCTGCATGGAGG
GACTCTCCCAGGAGGGCAGTGAAGGGGGCTGAGACCTCAGTTTCTCAGCCTTCTGGGACC
CGGCTGCCAGTGCTGTCTGTCTCAAATGCTATGCTGTGAGTCGTTTCAATAAAGAGCCCC
CAGGCTGAAAAAAGCTGTCACTACCCGGGGTTGAGGGGGGGCTGCTTCTCTGCCAAAGTG
CTAAGGACTTTGTGCCCTCACCCCTAGACCCAACCCCAGGCTACTTTTATTGAAAACATT
TATTACAACAAGATATCAGAGCTGCGTGACAGTAAGTTCACAGACTGGTGGGTCTGGCCT
AGGCTGGGGCCGGGGCAGGGACCTTATTGCCTGCTGCTGGCTCAGCCCTTGCCTGGAGGT
GACCCTTGGTGCTCGGCTGGCCTGGACAGAGGACAGATGCATGGCTGACTGTCAGGAGGG
CCTCTGGGGAAGGAGTGGGGAAGGGAGGGGGGGTGGCCTCCCTTGGCCCCTGCATGGGCT
AAGGCTGTACGACCGAGGGGGCTGGGCTCCTGCTCATCCTGTGGCTGACGATGATGCTGC
TGTTGGTGACCCGGGGCCCGTACCAGCCTGCCCAGTACTGGGTGTCCTTGCCCCCGTGCT
GGAAGAGGATGTGGCGGACACCTGGAGGGTAATCTGAGAAGGTGTGGGAGACCTCTGTCC
ACCTGGCATCGTTCCACTGAGGGATGGTCACAGGCGGGGGCTCGAAGGAGGCCAGGACGA
TGTAGTCAGCGGAGGCCAGCTGTACTCGGATGTGGTAGGTGCAACCACAGTCTGCTCTGG
CGGCGAACCAGTCCTTGACCACGATGTCTGGCCGGAACTTGTCCAGCAGCTCTTCCCAGT
AGCCCTCAGCTTTAAGGTCTATCAGCTGGGACTTGAGGCACATGCCGTAAGATGTGACAA
AGTACTTCTTGACTTTGGAGTCGGGAAAATCTGTGCCGTGGGCTCCAGGGAGGCTCTCTA
CCTTCCAGTGGTTCCCCCCATTGGAGTCAATTTTCCAGGACGTCATATCATCTTCAGCAC
ACGGGTTGCGCAGGAGGTTCCTGCGGAGGCTGCACAGAAAGTAGAAGACCTTCCAGTCGG
CCACGGGCTGGTCCCAGTCCTCAGCGACGAAGCCCTCACATAGGCATTTGCGCTTCCAGA
GGGTCACGAGGTCAATGAGGTCACGCCAGAGGCTGCAGACGGGGCGGCAGTTCAGCAGCA
GCTGGCGGGCGGGCAGGTGCGTGAACACCTCCAGCAGGATGCTCTCGGGCAGCTGGTTGA
TGCTGACCAGGGCCATGGCTGTGCAGGGCAGGGGGCACACACAAGCCCTCAAACTCCAAA
GTTGGCAAGAAAGCAATGAGTGAGCTCCGGGCTTTCTCTGTAGGTACCAGCACCTGTTTG
CTCACCAGCCTTGGAGTTGTTGGGGAGTCTTCTCTGGATCCAGGTTGAAACCTTCGTGTA
ATGCTAACCTTGTCGCCTGAACGTCTGGAGGTTCCTCCCGGCGGTGGGCGGCTCAGCGGC
GGGGACCCATCTCCTCTCGGCTTC
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
344-456, gnl|bosTau2|chr16 (21638345-21638457) |
|
344-456, gnl|Hg17|chr1 (11674796-11674684) |
|
344-456, gnl|Mm7|chr4 (147130455-147130567) |
| |
|
487-610, gnl|bosTau2|chr16 (21638345-21638468) |
|
487-610, gnl|Hg17|chr1 (11674796-11674673) |
|
487-610, gnl|Mm7|chr4 (147130455-147130578) |
| |
|
678-795, gnl|bosTau2|chr16 (21640713-21640830) |
|
678-795, gnl|Hg17|chr1 (11671273-11671155) |
|
678-795, gnl|Mm7|chr4 (147133082-147133199) |
| |
|
956-1536, gnl|bosTau2|chr16 (21642768-21643353) |
|
956-1536, gnl|Hg17|chr1 (11669236-11668300) |
|
956-1536, gnl|Mm7|chr4 (147134851-147135406) |
| |
|
1588-1914, gnl|bosTau2|chr16 (21643373-21643706) |
|
1588-1914, gnl|Hg17|chr1 (11668242-11667933) |
|
1588-1914, gnl|Mm7|chr4 (147135452-147135729) |
| |
|
2268-2567, gnl|bosTau2|chr16 (21648333-21648632) |
|
2268-2567, gnl|Hg17|chr1 (11663283-11662978) |
|
2268-2567, gnl|Mm7|chr4 (147138917-147139208) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
344-456, gnl|bosTau2|chr16 (21638345-21638457) |
|
344-456, gnl|Hg17|chr1 (11674796-11674684) |
|
344-456, gnl|Mm7|chr4 (147130455-147130567) |
| |
|
487-610, gnl|bosTau2|chr16 (21638345-21638468) |
|
487-610, gnl|Hg17|chr1 (11674796-11674673) |
|
487-610, gnl|Mm7|chr4 (147130455-147130578) |
| |
|
678-795, gnl|bosTau2|chr16 (21640713-21640830) |
|
678-795, gnl|Hg17|chr1 (11671273-11671155) |
|
678-795, gnl|Mm7|chr4 (147133082-147133199) |
| |
|
956-1536, gnl|bosTau2|chr16 (21642768-21643353) |
|
956-1536, gnl|Hg17|chr1 (11669236-11668300) |
|
956-1536, gnl|Mm7|chr4 (147134851-147135406) |
| |
|
1588-1914, gnl|bosTau2|chr16 (21643373-21643706) |
|
1588-1914, gnl|Hg17|chr1 (11668242-11667933) |
|
1588-1914, gnl|Mm7|chr4 (147135452-147135729) |
| |
|
2268-2567, gnl|bosTau2|chr16 (21648333-21648632) |
|
2268-2567, gnl|Hg17|chr1 (11663283-11662978) |
|
2268-2567, gnl|Mm7|chr4 (147138917-147139208) |
|
fty (0.527519) |
|
amn (0.417711) |
|
med (0.348756) |
|
eye (0.341006) |
|
fce (0.271592) |
|
ece (0.229305) |
|
cty (0.20816) |
|
fcc (0.197785) |
|
eje (0.197668) |
|
nep (0.183925) |
|
ton (0.1755) |
|
fhi (0.169578) |
|
nje (0.16592) |
|
hyp (0.142837) |
|
pla (0.133672) |
|
nmm (0.132802) |
|
ese (0.126502) |
|
cly (0.120642) |
|
nbm (0.0993246) |
|
fty (0.527519) |
|
amn (0.417711) |
|
med (0.348756) |
|
eye (0.341006) |
|
fce (0.271592) |
|
ece (0.229305) |
|
cty (0.20816) |
|
fcc (0.197785) |
|
eje (0.197668) |
|
nep (0.183925) |
|
ton (0.1755) |
|
fhi (0.169578) |
|
nje (0.16592) |
|
hyp (0.142837) |
|
pla (0.133672) |
|
nmm (0.132802) |
|
ese (0.126502) |
|
cly (0.120642) |
|
nbm (0.0993246) |
