Non-Coding RNA Search

Ss1.1-Pig4-TMW8045H01.3

Sequence:


               
               AGATCAGCGAGACATCCTGTCCCAAGCAGCCGATTGATGGGGATGATGTGGGTTCATCCC
ACTCGGTGGGAGGCATTTTAAGAGAATAAAGTCTCTAAGAGGGAAAACTGAGCGTAAACA
GAGTCTGATCCAGGAATCTGTATGCAGAGGTCAGCTCTCTCTCCCTTTTGTCTTCAGGCA
AGTTTGTCACAAAAGGTTTTAGCAAAAAGGGGTGACTGTGACCTGATGTGTCCTCCCTGC
CTCTCCCACCATCCTGTCCCCACCCCATTGTCCCCAGCCCCTGAGCTGCACCTGCTGGGT
GAGAAGGAGCTTGTGGACCAGGAGAAACTAATGACCCACCATCCTTTCTGCTGAGGATCC
AGGGTTTGGGTCTTTGGTGCTTTTCCAACCTCCTGCCAACAAAGAGCGCATGAGCTGGGA
GCCCCCACGGCCTGGCACGCCAAAGCAGGGATGCGGGGGAGCCTGGCCTTGGACAGGGGC
TCCATTTCTAGTTTGGAGGAGCTGCCTTCCCATCAAAACACTGACAGCCAAGTGGTCCTC
AGCCCCCAGCCAAGCCTCCAGGACAGCGGGGCCAGGGGGCCACCAGGACTGTCCCCCATT
CACCTGTACATACACGTACCGTGAACCCACCTTCGTGAGGCCGTGTCTCGTGCAGATGAC
ATCGAGGTGTGGCTTCTTAACCTTCGCTGTTGACGACTAGAGTTGTTTTTAATGCATGTA
CACTAAACTAGACTCCCTTGGGTGGTCCCTGAAGGAGGGGCGTGGGCACACCTCCGCCTG
ATACAGGTGTGCGCTCACCTGGGGGAGAAATAAACCACTTGTACTAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGATCAGCGAGACATCCTGTCCCAAGCAGCCGATTGATGGGGATGATGTGGGTTCATCCC
ACTCGGTGGGAGGCATTTTAAGAGAATAAAGTCTCTAAGAGGGAAAACTGAGCGTAAACA
GAGTCTGATCCAGGAATCTGTATGCAGAGGTCAGCTCTCTCTCCCTTTTGTCTTCAGGCA
AGTTTGTCACAAAAGGTTTTAGCAAAAAGGGGTGACTGTGACCTGATGTGTCCTCCCTGC
CTCTCCCACCATCCTGTCCCCACCCCATTGTCCCCAGCCCCTGAGCTGCACCTGCTGGGT
GAGAAGGAGCTTGTGGACCAGGAGAAACTAATGACCCACCATCCTTTCTGCTGAGGATCC
AGGGTTTGGGTCTTTGGTGCTTTTCCAACCTCCTGCCAACAAAGAGCGCATGAGCTGGGA
GCCCCCACGGCCTGGCACGCCAAAGCAGGGATGCGGGGGAGCCTGGCCTTGGACAGGGGC
TCCATTTCTAGTTTGGAGGAGCTGCCTTCCCATCAAAACACTGACAGCCAAGTGGTCCTC
AGCCCCCAGCCAAGCCTCCAGGACAGCGGGGCCAGGGGGCCACCAGGACTGTCCCCCATT
CACCTGTACATACACGTACCGTGAACCCACCTTCGTGAGGCCGTGTCTCGTGCAGATGAC
ATCGAGGTGTGGCTTCTTAACCTTCGCTGTTGACGACTAGAGTTGTTTTTAATGCATGTA
CACTAAACTAGACTCCCTTGGGTGGTCCCTGAAGGAGGGGCGTGGGCACACCTCCGCCTG
ATACAGGTGTGCGCTCACCTGGGGGAGAAATAAACCACTTGTACTAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               1-828, gnl|bosTau2|chr19 (52864763-52863963)
               

               
               1-828, gnl|Hg17|chr17 (69768941-69769753)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-828, gnl|bosTau2|chr19 (52864763-52863963)
               

               
               1-828, gnl|Hg17|chr17 (69768941-69769753)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

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               ese (0.506009)
               

               
               fbs (0.350693)
               

               
               hyp (0.285673)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               ton (0.1755)
               

               
               fhi (0.169578)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               che (0.136314)
               

               
               eru (0.120048)
               

               
               jej (0.0989218)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.506009)
               

               
               fbs (0.350693)
               

               
               hyp (0.285673)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               ton (0.1755)
               

               
               fhi (0.169578)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               che (0.136314)
               

               
               eru (0.120048)
               

               
               jej (0.0989218)

	1-828, gnl\|bosTau2\|chr19 (52864763-52863963)
	1-828, gnl\|Hg17\|chr17 (69768941-69769753)

	ese (0.506009)
	fbs (0.350693)
	hyp (0.285673)
	fli (0.202881)
	fcc (0.197785)
	ton (0.1755)
	fhi (0.169578)
	eli (0.151814)
	cag (0.151194)
	che (0.136314)
	eru (0.120048)
	jej (0.0989218)