Non-Coding RNA Search

Ss1.1-Pig4-TMW8045H12.3

Sequence:


               
               GTGAGCGGGGCTTCCTCACCCGTGAGCTTGCGCTTGTCACCCACGCCCTGCACCACTTCT
GGCTCCACAACCTCTGTGATGTCTACTTGGAGGCTGTGAAGCCGGTGCTGTCCCACTCAC
CTCGTCCCCCAGGGCCACCTCAGGTCCTCTTCTCCTGTGCTGACGTTGGTCTCCGCCTCC
TTGCCCCGCTGATGCCCTTCCTGGCTGAAGAGCTGTGGCAGAGGCTGCCCCTGAGGCCTG
GCAACACCACTGCCCCCAGCATCTGTGTTGCCCCCTACCCCAGTGCCCACAGCTTGGAGC
ACTGGCACCAGCCCGAGCTGGAGCGGCGCTTCTCCCGAGTCCAGGAGGCCGTGCAGGCGC
TGAGGGCTCTCCGCGCCACCTACCAGCTCACCAAGGCCCGGCCCCGAGTGCTGCTGCAGA
CCTCAGAGCCAGGAGAGCAGGGCCTCTTTGAGGCCTTCCTGGGGCCGCTGAGCACCCTGG
GCCACTGTGGGGCCGTGGGCTTTCTGCCCCCAGGTGCAGCAGCCCCCTCCAGCTGGGCCC
AGGCCTCTCTCAGTGACACGGCTCAGGTCTACATGGAGCTGCAGGGCCTGGTGGACCCCC
AGACCCACCTGCCGCGGCTAGCTGCCCGAAGACAGAAGTTGCAGAAGCAGCTTGACAGCC
TCCTAGCCCGGACCCCATCAGAGGGGGAGGCAGAGAGTCAGAGTCAGCAGAGGCTTTCTT
CCCTCCAGCTGGAATTGTCAAAACTGGACAAGGCGGCTTCTCACCTCCGGCAGCTGATGG
ATGCGTCTCCCAGCCCTGGGGAGCTCTGAGCTCTAACTCACCTGGTGGCTTTCATCCTCC
CACACCTGCCTCTGAGGACAGATCTGGCAGCTGTCAGGGTGCGATGGGGCCTCAGAGACT
ACGTGGTCCGGCCCCCTCGTTTTGTCAGTGAGGGAACAGACTGGCTTGGTCAGAGTGACT
GGGTGTCCTCCACATGCTCCCCTTTTTGTCCCAGCCTCCCTCCTCTGCAGTACCACCTGG
AAGTTTAGGAATGAGGACCCTCAGATAAAGTTAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGAGCGGGGCTTCCTCACCCGTGAGCTTGCGCTTGTCACCCACGCCCTGCACCACTTCT
GGCTCCACAACCTCTGTGATGTCTACTTGGAGGCTGTGAAGCCGGTGCTGTCCCACTCAC
CTCGTCCCCCAGGGCCACCTCAGGTCCTCTTCTCCTGTGCTGACGTTGGTCTCCGCCTCC
TTGCCCCGCTGATGCCCTTCCTGGCTGAAGAGCTGTGGCAGAGGCTGCCCCTGAGGCCTG
GCAACACCACTGCCCCCAGCATCTGTGTTGCCCCCTACCCCAGTGCCCACAGCTTGGAGC
ACTGGCACCAGCCCGAGCTGGAGCGGCGCTTCTCCCGAGTCCAGGAGGCCGTGCAGGCGC
TGAGGGCTCTCCGCGCCACCTACCAGCTCACCAAGGCCCGGCCCCGAGTGCTGCTGCAGA
CCTCAGAGCCAGGAGAGCAGGGCCTCTTTGAGGCCTTCCTGGGGCCGCTGAGCACCCTGG
GCCACTGTGGGGCCGTGGGCTTTCTGCCCCCAGGTGCAGCAGCCCCCTCCAGCTGGGCCC
AGGCCTCTCTCAGTGACACGGCTCAGGTCTACATGGAGCTGCAGGGCCTGGTGGACCCCC
AGACCCACCTGCCGCGGCTAGCTGCCCGAAGACAGAAGTTGCAGAAGCAGCTTGACAGCC
TCCTAGCCCGGACCCCATCAGAGGGGGAGGCAGAGAGTCAGAGTCAGCAGAGGCTTTCTT
CCCTCCAGCTGGAATTGTCAAAACTGGACAAGGCGGCTTCTCACCTCCGGCAGCTGATGG
ATGCGTCTCCCAGCCCTGGGGAGCTCTGAGCTCTAACTCACCTGGTGGCTTTCATCCTCC
CACACCTGCCTCTGAGGACAGATCTGGCAGCTGTCAGGGTGCGATGGGGCCTCAGAGACT
ACGTGGTCCGGCCCCCTCGTTTTGTCAGTGAGGGAACAGACTGGCTTGGTCAGAGTGACT
GGGTGTCCTCCACATGCTCCCCTTTTTGTCCCAGCCTCCCTCCTCTGCAGTACCACCTGG
AAGTTTAGGAATGAGGACCCTCAGATAAAGTTAAAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9H6B7_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9H6B7_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               403-561, - strand, RNAz p=0.955306
               

               
               406-565, - strand, RNAz p=0.875753

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               403-561, - strand, RNAz p=0.955306
               

               
               406-565, - strand, RNAz p=0.875753

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               89-297, gnl|bosTau2|chr23 (20653125-20652917)
               

               
               89-297, gnl|Hg17|chr6 (31000109-31000317)
               

               
               89-297, gnl|Mm7|chr17 (33759052-33758844)
               


               
               403-585, gnl|bosTau2|chr23 (20651966-20651784)
               

               
               403-585, gnl|canFam2|chr12 (3696503-3697386)
               

               
               403-585, gnl|echTel1|scaffold_254030 (3579-2763)
               

               
               403-585, gnl|hg17|chr6 (31001157-31002015)
               

               
               403-585, gnl|Hg17|chr6 (31001294-31001476)
               

               
               403-585, gnl|loxAfr1|scaffold_4520 (35580-36437)
               

               
               403-585, gnl|mm7|chr17 (33757911-33757229)
               

               
               403-585, gnl|Mm7|chr17 (33757843-33757662)
               

               
               403-585, gnl|monDom2|scaffold_42 (18409555-18408709)
               

               
               403-585, gnl|panTro1|chr5 (31464416-31465274)
               

               
               403-585, gnl|rheMac2|chr4 (30501047-30501903)
               

               
               403-585, gnl|rn3|chr20 (3237896-3238565)
               


               
               713-1055, gnl|bosTau2|chr23 (20651371-20651048)
               

               
               713-1055, gnl|Hg17|chr6 (31001864-31002207)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               89-297, gnl|bosTau2|chr23 (20653125-20652917)
               

               
               89-297, gnl|Hg17|chr6 (31000109-31000317)
               

               
               89-297, gnl|Mm7|chr17 (33759052-33758844)
               


               
               403-585, gnl|bosTau2|chr23 (20651966-20651784)
               

               
               403-585, gnl|canFam2|chr12 (3696503-3697386)
               

               
               403-585, gnl|echTel1|scaffold_254030 (3579-2763)
               

               
               403-585, gnl|hg17|chr6 (31001157-31002015)
               

               
               403-585, gnl|Hg17|chr6 (31001294-31001476)
               

               
               403-585, gnl|loxAfr1|scaffold_4520 (35580-36437)
               

               
               403-585, gnl|mm7|chr17 (33757911-33757229)
               

               
               403-585, gnl|Mm7|chr17 (33757843-33757662)
               

               
               403-585, gnl|monDom2|scaffold_42 (18409555-18408709)
               

               
               403-585, gnl|panTro1|chr5 (31464416-31465274)
               

               
               403-585, gnl|rheMac2|chr4 (30501047-30501903)
               

               
               403-585, gnl|rn3|chr20 (3237896-3238565)
               


               
               713-1055, gnl|bosTau2|chr23 (20651371-20651048)
               

               
               713-1055, gnl|Hg17|chr6 (31001864-31002207)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               fce (0.543183)
               

               
               pro (0.512033)
               

               
               fhi (0.339155)
               

               
               ece (0.229305)
               

               
               hyp (0.142837)
               

               
               jej (0.0989218)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.543183)
               

               
               pro (0.512033)
               

               
               fhi (0.339155)
               

               
               ece (0.229305)
               

               
               hyp (0.142837)
               

               
               jej (0.0989218)

	403-561, - strand, RNAz p=0.955306
	406-565, - strand, RNAz p=0.875753

	89-297, gnl\|bosTau2\|chr23 (20653125-20652917)
	89-297, gnl\|Hg17\|chr6 (31000109-31000317)
	89-297, gnl\|Mm7\|chr17 (33759052-33758844)

	403-585, gnl\|bosTau2\|chr23 (20651966-20651784)
	403-585, gnl\|canFam2\|chr12 (3696503-3697386)
	403-585, gnl\|echTel1\|scaffold_254030 (3579-2763)
	403-585, gnl\|hg17\|chr6 (31001157-31002015)
	403-585, gnl\|Hg17\|chr6 (31001294-31001476)
	403-585, gnl\|loxAfr1\|scaffold_4520 (35580-36437)
	403-585, gnl\|mm7\|chr17 (33757911-33757229)
	403-585, gnl\|Mm7\|chr17 (33757843-33757662)
	403-585, gnl\|monDom2\|scaffold_42 (18409555-18408709)
	403-585, gnl\|panTro1\|chr5 (31464416-31465274)
	403-585, gnl\|rheMac2\|chr4 (30501047-30501903)
	403-585, gnl\|rn3\|chr20 (3237896-3238565)

	713-1055, gnl\|bosTau2\|chr23 (20651371-20651048)
	713-1055, gnl\|Hg17\|chr6 (31001864-31002207)

	fce (0.543183)
	pro (0.512033)
	fhi (0.339155)
	ece (0.229305)
	hyp (0.142837)
	jej (0.0989218)