Non-Coding RNA Search

Ss1.1-Pig4-TMW8045H16.3

Sequence:


               
               TACTTTTCCGGCCAGGGCTCGGACACAGGCGCGTCGCTCAAGCTTGCCTCTTCGGAGCTG
GAGCGCCTGATCGTCCCCAACAGCAACGGCGTGATCACGACGACGCCCACGCCCCCGGGA
CAGTACTTTTACCCCCGCGGGGGTGGCAGTGGTGGAGGTGCTGGGGGCGCAGGGGGCGGC
GTCACCGAGGAGCAGGAAGGCTTCGCCGACGGCTTTGTAAAAGCCCTGGACGACCTGCAC
AAGATGAACCACGTGACGCCCCCCAACGTGTCCCTGGGTGCCAGCGGGGGGCCCCCAGCC
GGGCCCGGGGGCGTCTACGCGGGTCCAGAGCCACCTCCCGTCTACACCAATCTCAGCAGC
TATTCTCCAGCCTCTGCGCCCTCCGGAGGCGCCGGGGCCGCCGTCGGTACCGGGAGCTCG
TACCCGACGGCCACCATCAGCTACCTCCCACACGCGCCACCCTTCGCTGGCGGCCATCCC
GCGCAGCTGGGCCTGGGCCGCGGCGCCTCTACCTTCAAGGAGGAACCGCAGACCGTGCCT
GAGGCGCGCAGCCGCGACGCCACGCCACCGGTGTCCCCCATTAACATGGAAGACCAGGAG
CGCATCAAAGTAGAGCGCAAGCGGCTGCGGAACCGGCTGGCGGCCACCAAATGCCGGAAG
CGGAAGCTGGAGCGCATCGCGCGCCTGGAGGACAAGGTGAAGACACTCAAGGCCGAGAAC
GCGGGGCTGTCCAGCACTGCTGGCCTCCTCCGGGAGCAGGTGGCCCAGCTCAAACAGAAG
GTCATGACCCACGTCAGCAACGGCTGCCAGCTGCTGCTTGGGGTCAAGGGACACGCCTTC
TGAGCGCCCCCCTATTCCCGAACGGACATTTCCCCAGCCTGGACGGCTGGGCGCACGGCT
CCCATGGGGCGAGGGGGCAGGCGGTGGGCACTGGCCCAGGGGCCTGGGGACGCCACAAAC
CACACTGGACTCCTGCCCGCCCGCTCTGCGCCCAGTCCTTCCACCTCAACGTTTACAAGC
CCCCGCTTCCAAGTTTTTTTGTATGTTTTTTTTTTTTTTCCTGCTGGAAAGACTCAATTC
ATATTGAATATAATATATTTGTGTATTTAACAGGGAGGGGAGGAGGGGGGATCGCGGCGG
AGCTGGCCCCGCCGCCCGGTACTCAAGCCCCTGGGGAAACTGGGGAGGGGGACCCTCGCC
CCCTGCCCTCCCCCCTCTGCGCCATACTGTGGAGAAGAAACACGCACCCCGTCTTTAAAG
AGTTTATTTTAAGATGTGTTTGTGTGTGTGTGTGTTTGTTGTTATGACTTTTTATTGAAT
CTATTTAAGTAAAAAAAATGTTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACTTTTCCGGCCAGGGCTCGGACACAGGCGCGTCGCTCAAGCTTGCCTCTTCGGAGCTG
GAGCGCCTGATCGTCCCCAACAGCAACGGCGTGATCACGACGACGCCCACGCCCCCGGGA
CAGTACTTTTACCCCCGCGGGGGTGGCAGTGGTGGAGGTGCTGGGGGCGCAGGGGGCGGC
GTCACCGAGGAGCAGGAAGGCTTCGCCGACGGCTTTGTAAAAGCCCTGGACGACCTGCAC
AAGATGAACCACGTGACGCCCCCCAACGTGTCCCTGGGTGCCAGCGGGGGGCCCCCAGCC
GGGCCCGGGGGCGTCTACGCGGGTCCAGAGCCACCTCCCGTCTACACCAATCTCAGCAGC
TATTCTCCAGCCTCTGCGCCCTCCGGAGGCGCCGGGGCCGCCGTCGGTACCGGGAGCTCG
TACCCGACGGCCACCATCAGCTACCTCCCACACGCGCCACCCTTCGCTGGCGGCCATCCC
GCGCAGCTGGGCCTGGGCCGCGGCGCCTCTACCTTCAAGGAGGAACCGCAGACCGTGCCT
GAGGCGCGCAGCCGCGACGCCACGCCACCGGTGTCCCCCATTAACATGGAAGACCAGGAG
CGCATCAAAGTAGAGCGCAAGCGGCTGCGGAACCGGCTGGCGGCCACCAAATGCCGGAAG
CGGAAGCTGGAGCGCATCGCGCGCCTGGAGGACAAGGTGAAGACACTCAAGGCCGAGAAC
GCGGGGCTGTCCAGCACTGCTGGCCTCCTCCGGGAGCAGGTGGCCCAGCTCAAACAGAAG
GTCATGACCCACGTCAGCAACGGCTGCCAGCTGCTGCTTGGGGTCAAGGGACACGCCTTC
TGAGCGCCCCCCTATTCCCGAACGGACATTTCCCCAGCCTGGACGGCTGGGCGCACGGCT
CCCATGGGGCGAGGGGGCAGGCGGTGGGCACTGGCCCAGGGGCCTGGGGACGCCACAAAC
CACACTGGACTCCTGCCCGCCCGCTCTGCGCCCAGTCCTTCCACCTCAACGTTTACAAGC
CCCCGCTTCCAAGTTTTTTTGTATGTTTTTTTTTTTTTTCCTGCTGGAAAGACTCAATTC
ATATTGAATATAATATATTTGTGTATTTAACAGGGAGGGGAGGAGGGGGGATCGCGGCGG
AGCTGGCCCCGCCGCCCGGTACTCAAGCCCCTGGGGAAACTGGGGAGGGGGACCCTCGCC
CCCTGCCCTCCCCCCTCTGCGCCATACTGTGGAGAAGAAACACGCACCCCGTCTTTAAAG
AGTTTATTTTAAGATGTGTTTGTGTGTGTGTGTGTTTGTTGTTATGACTTTTTATTGAAT
CTATTTAAGTAAAAAAAATGTTCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57101922|ref|XP_542043.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57101922|ref|XP_542043.1|

Predicted RNA structure(s): 5 entry(ies)

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Predicted RNA structure(s): 5 entry(ies)

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               160-279, - strand, RNAz p=0.842055
               

               
               360-479, - strand, RNAz p=0.891485
               

               
               520-639, - strand, RNAz p=0.993799
               

               
               840-956, - strand, RNAz p=0.910211
               

               
               1037-1235, + strand, RNAz p=0.985563

Predicted RNA structure(s): 5 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               160-279, - strand, RNAz p=0.842055
               

               
               360-479, - strand, RNAz p=0.891485
               

               
               520-639, - strand, RNAz p=0.993799
               

               
               840-956, - strand, RNAz p=0.910211
               

               
               1037-1235, + strand, RNAz p=0.985563

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_002229, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_002229, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-1338, gnl|bosTau2|chr7 (8482451-8483779)
               

               
               1-1338, gnl|Hg17|chr19 (12763787-12765111)
               

               
               1-1338, gnl|Mm7|chr8 (83564343-83563040)
               


               
               171-845, gnl|bosTau2|chr19 (51058334-51058994)
               

               
               171-845, gnl|Hg17|chr19 (18252915-18252249)
               

               
               171-845, gnl|Mm7|chr8 (69153498-69154146)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1338, gnl|bosTau2|chr7 (8482451-8483779)
               

               
               1-1338, gnl|Hg17|chr19 (12763787-12765111)
               

               
               1-1338, gnl|Mm7|chr8 (83564343-83563040)
               


               
               171-845, gnl|bosTau2|chr19 (51058334-51058994)
               

               
               171-845, gnl|Hg17|chr19 (18252915-18252249)
               

               
               171-845, gnl|Mm7|chr8 (69153498-69154146)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               jca (0.34188)
               

               
               cga (0.279096)
               

               
               col (0.195008)
               

               
               ton (0.1755)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               cov (0.132153)
               

               
               eru (0.120048)
               

               
               jej (0.0989218)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.34188)
               

               
               cga (0.279096)
               

               
               col (0.195008)
               

               
               ton (0.1755)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               cov (0.132153)
               

               
               eru (0.120048)
               

               
               jej (0.0989218)

	160-279, - strand, RNAz p=0.842055
	360-479, - strand, RNAz p=0.891485
	520-639, - strand, RNAz p=0.993799
	840-956, - strand, RNAz p=0.910211
	1037-1235, + strand, RNAz p=0.985563

	1-1338, gnl\|bosTau2\|chr7 (8482451-8483779)
	1-1338, gnl\|Hg17\|chr19 (12763787-12765111)
	1-1338, gnl\|Mm7\|chr8 (83564343-83563040)

	171-845, gnl\|bosTau2\|chr19 (51058334-51058994)
	171-845, gnl\|Hg17\|chr19 (18252915-18252249)
	171-845, gnl\|Mm7\|chr8 (69153498-69154146)

	jca (0.34188)
	cga (0.279096)
	col (0.195008)
	ton (0.1755)
	cag (0.151194)
	lnt (0.142308)
	cov (0.132153)
	eru (0.120048)
	jej (0.0989218)