Non-Coding RNA Search

Ss1.1-Pig4-TMW8045H19.5

Sequence:


               
               TTGCAGCGCTGGCGAGCAGCAGCTCTCGGGGGCCTGGGAGCTGTGTCTGCCTGGAGCACA
AGCCTGTCTTTGCTCCTGCACCTGGTTCCTGTGTGGGCCTCTCCTCCCTGCCCCCCACGA
GCCCCTGCAGGACCGGGCCCACAGGCCATGTGTACTAACGGTCACTTGATGTGCGCTGGC
TGTTTTATCCACCTACTAGCAGATGCCCGGCTGAAGGAGGAGCAGGCCACGTGCCCCAAC
TGTCGTTGCGAGATCAGTAAGAGCCTCTGCTGCCGCAACCTGGCCGTGGAGAAGGCCGTG
AGCGAGCTGCCCTCCGAGTGTGGCTTCTGCCTGTGCCAGTTCCCCCGCTCCCTCCTGGAG
AGGCACCAGAAGGAGGAGTGCCAGGACAGGGTCACCCAGTGCAAGTACAAGCGCATCGGC
TGCCCGTGGCATGGCCCTTTCCACGAGCTGACAGTGCACGAGGCCGCGTGCGCCCACCCA
ACCAAGACGGGCAATGAGCTGATGGAGATCCTGGACGAGATGGACCAGAGCCACCGCAAA
GAGATGCAGCTCTACAATAGCATCTTCAGCCTGCTCAGCTTCGAGAAGATCGGCTACACA
GAGGTGCAGTTCCGGCCGTACCGCACGGACGACTTCATCACGCGCCTGTACTACGAGACG
CCGAGGTTCACGGTGCTGAACCAGACCTGGGTCCTGAAGGCGCGCGTCAACGACTCGGAG
CGCAACCCCAACCTGTCGTGCAAGCGCACGCTGTCCTTCCAGCTGCTCCTCAAGAGCAAG
GTCACGGCGCCCCTGGAGTGCTCCTTCCTGCTGCTCAAGGGCCCGTACGAGGACGTGAAG
ATCAGCCCAGTCATCTACCACTTCGTCTTCACCAACGAGAGCAACGAGACGGACTACGTG
CCGCTGCCCATCGTCGACTCCGTGGAGTGCAACAAGCTGCTGGCCGCCAAGAACATCAAC
CTGCGGCTCTTCCTGTTCCAGATCCAGAAGTAGGGGCGCCGCGCACGCGCGCGCCCCCCA
CGCCTGCCCGGCGGTGGCTTCGCAGCACCGTCGACCCTCGGCCACGGAGGAGGAGGAACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGCAGCGCTGGCGAGCAGCAGCTCTCGGGGGCCTGGGAGCTGTGTCTGCCTGGAGCACA
AGCCTGTCTTTGCTCCTGCACCTGGTTCCTGTGTGGGCCTCTCCTCCCTGCCCCCCACGA
GCCCCTGCAGGACCGGGCCCACAGGCCATGTGTACTAACGGTCACTTGATGTGCGCTGGC
TGTTTTATCCACCTACTAGCAGATGCCCGGCTGAAGGAGGAGCAGGCCACGTGCCCCAAC
TGTCGTTGCGAGATCAGTAAGAGCCTCTGCTGCCGCAACCTGGCCGTGGAGAAGGCCGTG
AGCGAGCTGCCCTCCGAGTGTGGCTTCTGCCTGTGCCAGTTCCCCCGCTCCCTCCTGGAG
AGGCACCAGAAGGAGGAGTGCCAGGACAGGGTCACCCAGTGCAAGTACAAGCGCATCGGC
TGCCCGTGGCATGGCCCTTTCCACGAGCTGACAGTGCACGAGGCCGCGTGCGCCCACCCA
ACCAAGACGGGCAATGAGCTGATGGAGATCCTGGACGAGATGGACCAGAGCCACCGCAAA
GAGATGCAGCTCTACAATAGCATCTTCAGCCTGCTCAGCTTCGAGAAGATCGGCTACACA
GAGGTGCAGTTCCGGCCGTACCGCACGGACGACTTCATCACGCGCCTGTACTACGAGACG
CCGAGGTTCACGGTGCTGAACCAGACCTGGGTCCTGAAGGCGCGCGTCAACGACTCGGAG
CGCAACCCCAACCTGTCGTGCAAGCGCACGCTGTCCTTCCAGCTGCTCCTCAAGAGCAAG
GTCACGGCGCCCCTGGAGTGCTCCTTCCTGCTGCTCAAGGGCCCGTACGAGGACGTGAAG
ATCAGCCCAGTCATCTACCACTTCGTCTTCACCAACGAGAGCAACGAGACGGACTACGTG
CCGCTGCCCATCGTCGACTCCGTGGAGTGCAACAAGCTGCTGGCCGCCAAGAACATCAAC
CTGCGGCTCTTCCTGTTCCAGATCCAGAAGTAGGGGCGCCGCGCACGCGCGCGCCCCCCA
CGCCTGCCCGGCGGTGGCTTCGCAGCACCGTCGACCCTCGGCCACGGAGGAGGAGGAACC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|22122006|gb|AAM89496.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|22122006|gb|AAM89496.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               150-390, gnl|bosTau2|chr14 (3308101-3308341)
               

               
               150-390, gnl|Hg17|chr8 (145649652-145649412)
               

               
               150-390, gnl|Mm7|chr15 (76731732-76731492)
               


               
               594-1016, gnl|bosTau2|chr14 (3310619-3311042)
               

               
               594-1016, gnl|Hg17|chr8 (145646969-145646537)
               

               
               594-1016, gnl|Mm7|chr15 (76729134-76728663)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               150-390, gnl|bosTau2|chr14 (3308101-3308341)
               

               
               150-390, gnl|Hg17|chr8 (145649652-145649412)
               

               
               150-390, gnl|Mm7|chr15 (76731732-76731492)
               


               
               594-1016, gnl|bosTau2|chr14 (3310619-3311042)
               

               
               594-1016, gnl|Hg17|chr8 (145646969-145646537)
               

               
               594-1016, gnl|Mm7|chr15 (76729134-76728663)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               nlu (0.191681)
               

               
               ctl (0.153069)
               

               
               nca (0.136874)
               

               
               pla (0.133672)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               ctl (0.153069)
               

               
               nca (0.136874)
               

               
               pla (0.133672)

	150-390, gnl\|bosTau2\|chr14 (3308101-3308341)
	150-390, gnl\|Hg17\|chr8 (145649652-145649412)
	150-390, gnl\|Mm7\|chr15 (76731732-76731492)

	594-1016, gnl\|bosTau2\|chr14 (3310619-3311042)
	594-1016, gnl\|Hg17\|chr8 (145646969-145646537)
	594-1016, gnl\|Mm7\|chr15 (76729134-76728663)