Non-Coding RNA Search

Ss1.1-Pig4-TMW8045H20.5

Sequence:


               
               GTGAATACCTACAGAGCAGCAGCCAGCGGTGGGGGCTCTGTGAAGTAAATCACGGCCTAT
TTGCAAGATAGGAAACATAAGAAGGGACTACGGTATATCTAAAGTTATTGATTTGGAAAG
ACTTCTTTTACATTTACTTTTGTCTCTTTTTGAGCTTTAGACCAATTGAATCACACACTG
TATTCTTTTCTGTGTGTTGAGCTTTTGCCCCACGTTTTGGTTGTGAGATTCATCCTGGTT
GGGTGTAGCAAGAGTTGGTTTATTCTCATTGCCGTGTAGTCTTCCTTTGTATGAAAACAC
CATGGCTTAAGTATTCATAACTTGTATTAGTCTTATCATCAGAAAAAATAGTCTAAAAAA
GTAAAACTTAAGTTACAGCTCAAATTGGAGGTACTTAATAACTTGAAGTTATCCCACAAT
ATTAGACTACATTTATCTAATTTGAGGGTTAGATTTGCTTCCAGCATTTACTCTGTAGCC
TTTATCTTGTGAGGCATTCACTTCACAATTTCCAACCGTTTGATCTCGATTCGTATCCCT
ACGTGTGAGCAATAAAGCCCTTTCTATTCTGAGTCACTAATGGAAGAATTGTTTTGTTGC
TCTCTAAAAATTCAGCCAGGACTCCAGTTCAACTTGAGTTGGCATTTTAAGAACATGCCC
ATATTAAGTTTAATAAGGCAGTAAGTGTGTAAAGTAACTCTTTTATGCATTGCTTTTCAG
GAAAAAAAGTTTAACCAGTCCTAGGTGATCAAGCAAGTTTCACAAATAACCCCCCCCAGC
AAGTGTAAAAATAATTAGGCCCAATTCAGAGGAAGTGGAGTTACTCCTGTTGCACACAAA
AGATGTCTAGTGGCTCCAGTGAAGTCGACGTGGTTTGTATTTCAAATTGAAAGTCTTTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGAATACCTACAGAGCAGCAGCCAGCGGTGGGGGCTCTGTGAAGTAAATCACGGCCTAT
TTGCAAGATAGGAAACATAAGAAGGGACTACGGTATATCTAAAGTTATTGATTTGGAAAG
ACTTCTTTTACATTTACTTTTGTCTCTTTTTGAGCTTTAGACCAATTGAATCACACACTG
TATTCTTTTCTGTGTGTTGAGCTTTTGCCCCACGTTTTGGTTGTGAGATTCATCCTGGTT
GGGTGTAGCAAGAGTTGGTTTATTCTCATTGCCGTGTAGTCTTCCTTTGTATGAAAACAC
CATGGCTTAAGTATTCATAACTTGTATTAGTCTTATCATCAGAAAAAATAGTCTAAAAAA
GTAAAACTTAAGTTACAGCTCAAATTGGAGGTACTTAATAACTTGAAGTTATCCCACAAT
ATTAGACTACATTTATCTAATTTGAGGGTTAGATTTGCTTCCAGCATTTACTCTGTAGCC
TTTATCTTGTGAGGCATTCACTTCACAATTTCCAACCGTTTGATCTCGATTCGTATCCCT
ACGTGTGAGCAATAAAGCCCTTTCTATTCTGAGTCACTAATGGAAGAATTGTTTTGTTGC
TCTCTAAAAATTCAGCCAGGACTCCAGTTCAACTTGAGTTGGCATTTTAAGAACATGCCC
ATATTAAGTTTAATAAGGCAGTAAGTGTGTAAAGTAACTCTTTTATGCATTGCTTTTCAG
GAAAAAAAGTTTAACCAGTCCTAGGTGATCAAGCAAGTTTCACAAATAACCCCCCCCAGC
AAGTGTAAAAATAATTAGGCCCAATTCAGAGGAAGTGGAGTTACTCCTGTTGCACACAAA
AGATGTCTAGTGGCTCCAGTGAAGTCGACGTGGTTTGTATTTCAAATTGAAAGTCTTTGT

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               43-448, gnl|bosTau2|chr10 (24249104-24248675)
               

               
               43-448, gnl|Hg17|chrX (17520546-17520974)
               


               
               453-896, gnl|bosTau2|chr10 (24247864-24247413)
               

               
               453-896, gnl|Hg17|chrX (17521570-17522019)

Aligned organism(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               43-448, gnl|bosTau2|chr10 (24249104-24248675)
               

               
               43-448, gnl|Hg17|chrX (17520546-17520974)
               


               
               453-896, gnl|bosTau2|chr10 (24247864-24247413)
               

               
               453-896, gnl|Hg17|chrX (17521570-17522019)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               nlu (0.191681)
               

               
               nmm (0.132802)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               nmm (0.132802)

	43-448, gnl\|bosTau2\|chr10 (24249104-24248675)
	43-448, gnl\|Hg17\|chrX (17520546-17520974)

	453-896, gnl\|bosTau2\|chr10 (24247864-24247413)
	453-896, gnl\|Hg17\|chrX (17521570-17522019)