Ss1.1-Pig4-TMW8045I13.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGAGGTCCCGGAGATCTCCAACACGTCCATCTCCCAGGGCATCAGTGGTCTTCTTGACA GCCTCAATGCCCGCGACATCAGCGTCAAGATCTTTGAAGACTTTGCCCAGTCCTGGTATT GGATTCTTGCCGCCCTAGGCGTGGCTCTGGTCCTGAGCCTGCTGTTTGTCCTGCTTCTGC GCCTGGTGGCTGGGCCCCTGGTGTTCGTGCTGATCATAGGGGTGCTGGGGGTGCTGGCCT ATGGCATCTACCACTGCTGGAACGAGTACCGCTTGCTGCGGGACAAGGGCGCCTCCATTT CCCAGCTGGGCTTCACCACCAACCTCAGCGCCTACAGCAGCGTCCAGGAGACCTGGCTAG CAGCCCTGATCCTGCTGGCTGTGCTTGAAGGCATCCTGCTACTAATGCTCATCTTCCTGC GGCAGCGGATTCGCATAGCCATTGCCCTCCTGGAGGAAGCCAGCAGGGCTGTAGGCCAGA TGATGTCTACCCTGTTCTACCCGCTGGTCACCTTCGTCCTCCTGCTCGTCTGCATTGCCT ACTGGGCCATGACCGCCCTATACCTGGCCACCTCGGGGCAACCCCAGTACGTGCTCTGGG CACCCAACGTCAGCCTGGCGGGCTGTGAGAAAGTGATGATGAATACATCATGTGACCCCA TGAACCAGCCAGTGAACTCCACCTGCCCAGGGCTGATGTGCGTCTTCCAGGGCTACTTGT CCACAGGCCTGGTACAACGTTCTCTCTTCAACTTGCAAATCTACGGGGTCCTGGGGCTAT TCTGGACCATCAACTGGGTCCTGGCCCTGGGCCAGTGTGTCCTGGCTGGGGCCTTCGCCT CCTTCTACTGGGCCTTCCACAAGCCCCGGGACATTCCTACCTTTCCCCTGAGCTCTGCCT TCATCCGCACACTCCGGTATCACACTGGGTCGCTAGCCTTCGGAGCCCTCATCCTGACCC TGGTGCAGATAGCACGGGCCATCCTGGAGTACATTGACCACAAACTGAGAGGAGCCCAGA ACCCGGTGGCCCGCTGTATCATGTGCTGCTTCAAGTGCTGCCTCTGGTGTTTGGAAAAGT TTATCAAGTTCCTGAACCGTAATGCATACATCATGATTGCCATCTATGGGAAGAATTTCT GTGTCTCAGCCAAAAACGCCTTCATGCTGCTCATGCGGAACATTGTCAGGGTGGTCGTCC TGGACAAGGTCACAGACCTGCTGCTGTTCTTTGGGAAATTGCTGGTGGTTGGAGGTGTCG GGGTCCTGTCCTTCTTTTTTTTCACCGGTCGCATCCAGGGACTGGGTAAAGACTTTGAGA GTCCCCAGCTCAACTATTACTGGCTGCCCATCATGACCTCCATCATGGGAGCCTACGTCA TCGCCAGTGGCTTCTTCAGCGTTTTCGGCATGTGTGTGGATACTCTCTTCCTCTGTTTCT TGGAAGACCTGGAGAGGAACGACGGCTCCCTGGACCGGCCCTACTACATGTCCAAAGCCC TTCTGAAGATTCTGGGCAAGAAGAACGAGGTGCCCTCGGGAGACAAGAAGAGGAAGAAGT GAGAGACGTAGCCCTGATCCAAAACAGCACCCCGCCTGTACAGCCTCCCAGCCTCATTCC CGCCTTCCAGATGTCGATTTTGTAGTAAAAAGATTAAAAGATTGATATTGTGTTTTCTCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGAGGTCCCGGAGATCTCCAACACGTCCATCTCCCAGGGCATCAGTGGTCTTCTTGACA GCCTCAATGCCCGCGACATCAGCGTCAAGATCTTTGAAGACTTTGCCCAGTCCTGGTATT GGATTCTTGCCGCCCTAGGCGTGGCTCTGGTCCTGAGCCTGCTGTTTGTCCTGCTTCTGC GCCTGGTGGCTGGGCCCCTGGTGTTCGTGCTGATCATAGGGGTGCTGGGGGTGCTGGCCT ATGGCATCTACCACTGCTGGAACGAGTACCGCTTGCTGCGGGACAAGGGCGCCTCCATTT CCCAGCTGGGCTTCACCACCAACCTCAGCGCCTACAGCAGCGTCCAGGAGACCTGGCTAG CAGCCCTGATCCTGCTGGCTGTGCTTGAAGGCATCCTGCTACTAATGCTCATCTTCCTGC GGCAGCGGATTCGCATAGCCATTGCCCTCCTGGAGGAAGCCAGCAGGGCTGTAGGCCAGA TGATGTCTACCCTGTTCTACCCGCTGGTCACCTTCGTCCTCCTGCTCGTCTGCATTGCCT ACTGGGCCATGACCGCCCTATACCTGGCCACCTCGGGGCAACCCCAGTACGTGCTCTGGG CACCCAACGTCAGCCTGGCGGGCTGTGAGAAAGTGATGATGAATACATCATGTGACCCCA TGAACCAGCCAGTGAACTCCACCTGCCCAGGGCTGATGTGCGTCTTCCAGGGCTACTTGT CCACAGGCCTGGTACAACGTTCTCTCTTCAACTTGCAAATCTACGGGGTCCTGGGGCTAT TCTGGACCATCAACTGGGTCCTGGCCCTGGGCCAGTGTGTCCTGGCTGGGGCCTTCGCCT CCTTCTACTGGGCCTTCCACAAGCCCCGGGACATTCCTACCTTTCCCCTGAGCTCTGCCT TCATCCGCACACTCCGGTATCACACTGGGTCGCTAGCCTTCGGAGCCCTCATCCTGACCC TGGTGCAGATAGCACGGGCCATCCTGGAGTACATTGACCACAAACTGAGAGGAGCCCAGA ACCCGGTGGCCCGCTGTATCATGTGCTGCTTCAAGTGCTGCCTCTGGTGTTTGGAAAAGT TTATCAAGTTCCTGAACCGTAATGCATACATCATGATTGCCATCTATGGGAAGAATTTCT GTGTCTCAGCCAAAAACGCCTTCATGCTGCTCATGCGGAACATTGTCAGGGTGGTCGTCC TGGACAAGGTCACAGACCTGCTGCTGTTCTTTGGGAAATTGCTGGTGGTTGGAGGTGTCG GGGTCCTGTCCTTCTTTTTTTTCACCGGTCGCATCCAGGGACTGGGTAAAGACTTTGAGA GTCCCCAGCTCAACTATTACTGGCTGCCCATCATGACCTCCATCATGGGAGCCTACGTCA TCGCCAGTGGCTTCTTCAGCGTTTTCGGCATGTGTGTGGATACTCTCTTCCTCTGTTTCT TGGAAGACCTGGAGAGGAACGACGGCTCCCTGGACCGGCCCTACTACATGTCCAAAGCCC TTCTGAAGATTCTGGGCAAGAAGAACGAGGTGCCCTCGGGAGACAAGAAGAGGAAGAAGT GAGAGACGTAGCCCTGATCCAAAACAGCACCCCGCCTGTACAGCCTCCCAGCCTCATTCC CGCCTTCCAGATGTCGATTTTGTAGTAAAAAGATTAAAAGATTGATATTGTGTTTTCTCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 704-903, - strand, RNAz p=0.625535 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 704-903, - strand, RNAz p=0.625535 |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 132-365, gnl|bosTau2|chr23 (23473447-23473214) | |
| 132-365, gnl|Hg17|chr6 (31946802-31946569) | |
| 132-365, gnl|Mm7|chr17 (33018619-33018852) | |
| 463-585, gnl|bosTau2|chr23 (23472567-23472444) | |
| 463-585, gnl|Hg17|chr6 (31945397-31945274) | |
| 463-585, gnl|Mm7|chr17 (33020514-33020624) | |
| 667-919, gnl|bosTau2|chr23 (23469171-23468919) | |
| 667-919, gnl|Hg17|chr6 (31941881-31941626) | |
| 667-919, gnl|Mm7|chr17 (33024765-33025017) | |
| 1010-1115, gnl|bosTau2|chr23 (23468632-23468527) | |
| 1010-1115, gnl|canFam2|chr12 (4332769-4332843) | |
| 1010-1115, gnl|danRer3|chrNA (56316079-56316153) | |
| 1010-1115, gnl|dasNov1|scaffold_114903 (1897-1823) | |
| 1010-1115, gnl|echTel1|scaffold_299490 (46942-47016) | |
| 1010-1115, gnl|fr1|chrUn (204003630-204003556) | |
| 1010-1115, gnl|hg17|chr6 (31941250-31941324) | |
| 1010-1115, gnl|Hg17|chr6 (31941359-31941254) | |
| 1010-1115, gnl|loxAfr1|scaffold_60787 (10046-9972) | |
| 1010-1115, gnl|mm7|chr17 (33025405-33025331) | |
| 1010-1115, gnl|Mm7|chr17 (33025294-33025399) | |
| 1010-1115, gnl|monDom2|scaffold_42 (17491524-17491450) | |
| 1010-1115, gnl|oryCun1|scaffold_187514 (384-310) | |
| 1010-1115, gnl|panTro1|chr5 (32346165-32346239) | |
| 1010-1115, gnl|rheMac2|chr4 (31515260-31515334) | |
| 1010-1115, gnl|rn3|chr20 (4007828-4007902) | |
| 1010-1115, gnl|tetNig1|chrUn_random (96808812-96808886) | |
| 1010-1115, gnl|xenTro1|scaffold_1207 (52901-52975) | |
| 1424-1680, gnl|bosTau2|chr23 (23467021-23466771) | |
| 1424-1680, gnl|Hg17|chr6 (31939521-31938953) | |
| 1424-1680, gnl|Mm7|chr17 (33027188-33027445) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 132-365, gnl|bosTau2|chr23 (23473447-23473214) | |
| 132-365, gnl|Hg17|chr6 (31946802-31946569) | |
| 132-365, gnl|Mm7|chr17 (33018619-33018852) | |
| 463-585, gnl|bosTau2|chr23 (23472567-23472444) | |
| 463-585, gnl|Hg17|chr6 (31945397-31945274) | |
| 463-585, gnl|Mm7|chr17 (33020514-33020624) | |
| 667-919, gnl|bosTau2|chr23 (23469171-23468919) | |
| 667-919, gnl|Hg17|chr6 (31941881-31941626) | |
| 667-919, gnl|Mm7|chr17 (33024765-33025017) | |
| 1010-1115, gnl|bosTau2|chr23 (23468632-23468527) | |
| 1010-1115, gnl|canFam2|chr12 (4332769-4332843) | |
| 1010-1115, gnl|danRer3|chrNA (56316079-56316153) | |
| 1010-1115, gnl|dasNov1|scaffold_114903 (1897-1823) | |
| 1010-1115, gnl|echTel1|scaffold_299490 (46942-47016) | |
| 1010-1115, gnl|fr1|chrUn (204003630-204003556) | |
| 1010-1115, gnl|hg17|chr6 (31941250-31941324) | |
| 1010-1115, gnl|Hg17|chr6 (31941359-31941254) | |
| 1010-1115, gnl|loxAfr1|scaffold_60787 (10046-9972) | |
| 1010-1115, gnl|mm7|chr17 (33025405-33025331) | |
| 1010-1115, gnl|Mm7|chr17 (33025294-33025399) | |
| 1010-1115, gnl|monDom2|scaffold_42 (17491524-17491450) | |
| 1010-1115, gnl|oryCun1|scaffold_187514 (384-310) | |
| 1010-1115, gnl|panTro1|chr5 (32346165-32346239) | |
| 1010-1115, gnl|rheMac2|chr4 (31515260-31515334) | |
| 1010-1115, gnl|rn3|chr20 (4007828-4007902) | |
| 1010-1115, gnl|tetNig1|chrUn_random (96808812-96808886) | |
| 1010-1115, gnl|xenTro1|scaffold_1207 (52901-52975) | |
| 1424-1680, gnl|bosTau2|chr23 (23467021-23466771) | |
| 1424-1680, gnl|Hg17|chr6 (31939521-31938953) | |
| 1424-1680, gnl|Mm7|chr17 (33027188-33027445) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| cje (1.65235) | |
| cst (0.840218) | |
| jej (0.593531) | |
| col (0.585023) | |
| duo (0.518403) | |
| nco (0.485201) | |
| cmu (0.372787) | |
| sto (0.359648) | |
| ill (0.351185) | |
| cki (0.330469) | |
| nmm (0.265604) | |
| sin (0.174948) | |
| cag (0.151194) | |
| cov (0.132153) | |
| tra (0.123092) | |
| clu (0.119646) | |
| pgl (0.118483) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cje (1.65235) | |
| cst (0.840218) | |
| jej (0.593531) | |
| col (0.585023) | |
| duo (0.518403) | |
| nco (0.485201) | |
| cmu (0.372787) | |
| sto (0.359648) | |
| ill (0.351185) | |
| cki (0.330469) | |
| nmm (0.265604) | |
| sin (0.174948) | |
| cag (0.151194) | |
| cov (0.132153) | |
| tra (0.123092) | |
| clu (0.119646) | |
| pgl (0.118483) |