Non-Coding RNA Search

Ss1.1-Pig4-TMW8045J05.3

Sequence:


               
               TCCAGAGGGAAAAGTTTGTGCTTCTAGGGTAGGGACAATAATCTTTGTGCCTCACTTCAT
CCCTAAGTGGGTATGACTCTTCTTATTACCATATGCTTTGTTAGTATATTTTACAAATTT
GCTTTAAAAAATTATTTTAGATATTGTGTAACATGTGCAATCAGAATAATTTTATAATAG
CCAGGTCATAAAAAGACATTACTTTAGTACAGATTCACTATATTTGTTCTCCCAGTAATG
AGAGAATGAATGAACCTTTTGGAGATACTGATATTAAGCAATTGTTTTTTGCAATATTGA
ATGTGTTTTTTAGTTTAGTTTGTTTTTTTTTCTCCAGTAGGGCACTACCTGGTATCTCAT
CTTGTATTACTTTTTGACATAAAGCAACTAATCTTTACAGTATGCCATATTTTTTTTATT
GTAGTTGTAAATTATGAAAGATCCTTGAATTTTCTATAGATCTACAACTACTAAAGTAAC
TGACAAGGGCAATCTTGGTATTTAAATCTGAGCATGGCAATTCTACCATAAAAAGTACTC
TATTTTTCTAATTTCTAGGATTTTTAAAATAACATTTCTCTGTCTGACACATTAATATTC
ACTCAAGCTGTACCATTTATTTTAGTTTGCATATATTTCATTGTTTTAATTTAATATAAT
GTATTGAGTCTAATAGACTGTTTTTCAATAATTAGAATAAAAGATTTTCTTCTAATCAGA
GATGCATAACAGCTATTATCTAGGGGACCACCAAATGTGATTTCAGAATTTCGTTAACTA
TTACAAATATAATCCTTATATAGAAATTTTAATTTTGTAAAGTAGTGTATAATATTGTAA
CATTAAATTCTTGTTTTCAGATTCAAATATGTATTGATCTTCAATGTGCTGTGTTAAATC
TTGCTTCTCTTAAATGTTAGAGACAAGATTTGTCTTCCTTTTTACAGTTTGTAATTTTCA
CTGTTTTATTCCTGTAAAAAAAAAAAGTCATTTGTAACCCATGCAAATAATCGTTTGAAC
TGTGCTAACTTATCAATTTGGCTATTCAATAAAGTTAATTGAACGAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCAGAGGGAAAAGTTTGTGCTTCTAGGGTAGGGACAATAATCTTTGTGCCTCACTTCAT
CCCTAAGTGGGTATGACTCTTCTTATTACCATATGCTTTGTTAGTATATTTTACAAATTT
GCTTTAAAAAATTATTTTAGATATTGTGTAACATGTGCAATCAGAATAATTTTATAATAG
CCAGGTCATAAAAAGACATTACTTTAGTACAGATTCACTATATTTGTTCTCCCAGTAATG
AGAGAATGAATGAACCTTTTGGAGATACTGATATTAAGCAATTGTTTTTTGCAATATTGA
ATGTGTTTTTTAGTTTAGTTTGTTTTTTTTTCTCCAGTAGGGCACTACCTGGTATCTCAT
CTTGTATTACTTTTTGACATAAAGCAACTAATCTTTACAGTATGCCATATTTTTTTTATT
GTAGTTGTAAATTATGAAAGATCCTTGAATTTTCTATAGATCTACAACTACTAAAGTAAC
TGACAAGGGCAATCTTGGTATTTAAATCTGAGCATGGCAATTCTACCATAAAAAGTACTC
TATTTTTCTAATTTCTAGGATTTTTAAAATAACATTTCTCTGTCTGACACATTAATATTC
ACTCAAGCTGTACCATTTATTTTAGTTTGCATATATTTCATTGTTTTAATTTAATATAAT
GTATTGAGTCTAATAGACTGTTTTTCAATAATTAGAATAAAAGATTTTCTTCTAATCAGA
GATGCATAACAGCTATTATCTAGGGGACCACCAAATGTGATTTCAGAATTTCGTTAACTA
TTACAAATATAATCCTTATATAGAAATTTTAATTTTGTAAAGTAGTGTATAATATTGTAA
CATTAAATTCTTGTTTTCAGATTCAAATATGTATTGATCTTCAATGTGCTGTGTTAAATC
TTGCTTCTCTTAAATGTTAGAGACAAGATTTGTCTTCCTTTTTACAGTTTGTAATTTTCA
CTGTTTTATTCCTGTAAAAAAAAAAAGTCATTTGTAACCCATGCAAATAATCGTTTGAAC
TGTGCTAACTTATCAATTTGGCTATTCAATAAAGTTAATTGAACGAAAAAAAAAAAAAAA

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               1-118, - strand, RNAz p=0.780552
               

               
               397-515, - strand, RNAz p=0.816749
               

               
               672-788, - strand, RNAz p=0.84801

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-118, - strand, RNAz p=0.780552
               

               
               397-515, - strand, RNAz p=0.816749
               

               
               672-788, - strand, RNAz p=0.84801

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               666-763, - strand, RNAmicro p=0.996711
               

               
               406-524, - strand, RNAmicro p=0.975485

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               666-763, - strand, RNAmicro p=0.996711
               

               
               406-524, - strand, RNAmicro p=0.975485

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1066, gnl|bosTau2|chr7 (32409502-32408446)
               

               
               1-1066, gnl|Hg17|chr5 (134090431-134091493)
               

               
               1-1066, gnl|Mm7|chr11 (51650042-51649025)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1066, gnl|bosTau2|chr7 (32409502-32408446)
               

               
               1-1066, gnl|Hg17|chr5 (134090431-134091493)
               

               
               1-1066, gnl|Mm7|chr11 (51650042-51649025)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               kid (0.389206)
               

               
               mas (0.210305)
               

               
               nco (0.161734)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               med (0.116252)

Expressed library(ies): 10 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.389206)
               

               
               mas (0.210305)
               

               
               nco (0.161734)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               med (0.116252)

	1-118, - strand, RNAz p=0.780552
	397-515, - strand, RNAz p=0.816749
	672-788, - strand, RNAz p=0.84801

	666-763, - strand, RNAmicro p=0.996711
	406-524, - strand, RNAmicro p=0.975485

	1-1066, gnl\|bosTau2\|chr7 (32409502-32408446)
	1-1066, gnl\|Hg17\|chr5 (134090431-134091493)
	1-1066, gnl\|Mm7\|chr11 (51650042-51649025)

	kid (0.389206)
	mas (0.210305)
	nco (0.161734)
	liv (0.146284)
	lin (0.145603)
	spl (0.143184)
	ret (0.128733)
	tra (0.123092)
	eru (0.120048)
	med (0.116252)