Non-Coding RNA Search

Ss1.1-Pig4-TMW8045J18.3

Sequence:


               
               CCCACCCCCTACCCCTTACCCCCTACCCCCTTGGTTAATCCGCAGAGCTGGGAAAGGGCT
AAGTGACTAACTGGTTCAGGTACTTTTTTTTCTGGGGAAAAAAGGCTTTGTTTCTTTTTT
GTAAAAATGACAGGCACGTGGAAGTGGCAACGCTGTAACTGGGAGTCTGCTGCTATGCAG
CCACAGACACACAACTTTTAGCCTGATTTGTAGAAACGTGGGTAATTTTTTAATGACTTT
CCTCCTTGAGAAGCAGCTGAGACCTCCTTGGAAAGCGGAAGTGATGGCGCACAGACAGAG
AGGGTAACAGGCGAGAGCCAGGAAGAGGAGTAAGTGATACACTGCTGGGGTTTGTTTCCT
GCTTAGTAAATACAACTATTTTTCAGAATTAAATTTTTAAACTTGCACTACAGAACTGTG
GGTGGAGCCTTTCCTTTTACAACTGTTTTTGTTTGTTTGTTTGTTTTGTTTTTTTTTAAA
CCAGAGTTTAAACTTCCACTTGGCAATTTCTTATCACTTGAAATGTCAACATTTGCTAAC
TTTCAGATATCCTTTTGGTTACACCAAAGAAAATTTTACGACTATTTTTCCTTGAACTGC
CTGCAGTATCATGTCCTCATTTAGAAAGGTTTATGAAAATCTATTATATATTATCTTACT
TTGAAGAAAGTGCTGAATAGCTCTTAATAGTCAAATAAACTGATACAAATTGGCAGGGCT
GGCTATTAATTAGCCCTGGGAAATGAGTTTTTAGATTAAAAAGTTTTTTTGCATCATTTG
GTTTGTGTGTTTTTATATTTTTTTATAAAGAATTGAGTTGGCTAATTACCTTCTAATCTT
CTCCAGTTAGAATTTTAACACTTTAGACATGGAAGAAAAGTGTGTAAAGTATTTATTTTT
TATGTGATATTCTTACGACCCTCATCCTCCAGTTCCTCCCAGCTGTACATAGACTCCTTT
ATTTGTTGGTTAAATAAAATCAGAGCCTTGTCTTATCAGAAGAACCTCAGATGAAAATGC
TGAGCTTACTGGCCTAAATATAATACGGGTGCCAATTGTCATCTTTTCTGGTAAGAAAAT
ACCGTCTCAAAGTTGGACTGCACAGCACAGGTCCCGTCATCACAAGGTTTATACAATAAA
ACATTAGATACCTATTTTAGACACGTCTTTGAAACAAAAACAAACCTAAAGAATTGACTT
CTTCCATTCTCTGAAGAGAGCAAAACACATCTTTTCACACAACCAGAAATCAAGACCTGA
TGTTTGGCCAAGGGCAGAAGGACTTTCTACCACTTGGAGCAAGTGTCTGCTACATTGGGT
ACAAGAGTCTTTTTTTTTTTCTAAATTTCAGAAAAGTGGTGTTGGCCTTGGACTATGAAA
TCTCCTCATAGCTACCTAAAAAAGATTAGAATGTATGTGGATATCAGAAATCAAATTTAA
TATATAAAAGTCATTTATGTTGAAGGTAAGATAAGCACCCTCAAAACTAATTATAAAATT
TTTTTTAAAAAAATCCCCACTTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCACCCCCTACCCCTTACCCCCTACCCCCTTGGTTAATCCGCAGAGCTGGGAAAGGGCT
AAGTGACTAACTGGTTCAGGTACTTTTTTTTCTGGGGAAAAAAGGCTTTGTTTCTTTTTT
GTAAAAATGACAGGCACGTGGAAGTGGCAACGCTGTAACTGGGAGTCTGCTGCTATGCAG
CCACAGACACACAACTTTTAGCCTGATTTGTAGAAACGTGGGTAATTTTTTAATGACTTT
CCTCCTTGAGAAGCAGCTGAGACCTCCTTGGAAAGCGGAAGTGATGGCGCACAGACAGAG
AGGGTAACAGGCGAGAGCCAGGAAGAGGAGTAAGTGATACACTGCTGGGGTTTGTTTCCT
GCTTAGTAAATACAACTATTTTTCAGAATTAAATTTTTAAACTTGCACTACAGAACTGTG
GGTGGAGCCTTTCCTTTTACAACTGTTTTTGTTTGTTTGTTTGTTTTGTTTTTTTTTAAA
CCAGAGTTTAAACTTCCACTTGGCAATTTCTTATCACTTGAAATGTCAACATTTGCTAAC
TTTCAGATATCCTTTTGGTTACACCAAAGAAAATTTTACGACTATTTTTCCTTGAACTGC
CTGCAGTATCATGTCCTCATTTAGAAAGGTTTATGAAAATCTATTATATATTATCTTACT
TTGAAGAAAGTGCTGAATAGCTCTTAATAGTCAAATAAACTGATACAAATTGGCAGGGCT
GGCTATTAATTAGCCCTGGGAAATGAGTTTTTAGATTAAAAAGTTTTTTTGCATCATTTG
GTTTGTGTGTTTTTATATTTTTTTATAAAGAATTGAGTTGGCTAATTACCTTCTAATCTT
CTCCAGTTAGAATTTTAACACTTTAGACATGGAAGAAAAGTGTGTAAAGTATTTATTTTT
TATGTGATATTCTTACGACCCTCATCCTCCAGTTCCTCCCAGCTGTACATAGACTCCTTT
ATTTGTTGGTTAAATAAAATCAGAGCCTTGTCTTATCAGAAGAACCTCAGATGAAAATGC
TGAGCTTACTGGCCTAAATATAATACGGGTGCCAATTGTCATCTTTTCTGGTAAGAAAAT
ACCGTCTCAAAGTTGGACTGCACAGCACAGGTCCCGTCATCACAAGGTTTATACAATAAA
ACATTAGATACCTATTTTAGACACGTCTTTGAAACAAAAACAAACCTAAAGAATTGACTT
CTTCCATTCTCTGAAGAGAGCAAAACACATCTTTTCACACAACCAGAAATCAAGACCTGA
TGTTTGGCCAAGGGCAGAAGGACTTTCTACCACTTGGAGCAAGTGTCTGCTACATTGGGT
ACAAGAGTCTTTTTTTTTTTCTAAATTTCAGAAAAGTGGTGTTGGCCTTGGACTATGAAA
TCTCCTCATAGCTACCTAAAAAAGATTAGAATGTATGTGGATATCAGAAATCAAATTTAA
TATATAAAAGTCATTTATGTTGAAGGTAAGATAAGCACCCTCAAAACTAATTATAAAATT
TTTTTTAAAAAAATCCCCACTTTA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               444-563, - strand, RNAz p=0.996261
               

               
               1188-1380, - strand, RNAz p=0.692962

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               444-563, - strand, RNAz p=0.996261
               

               
               1188-1380, - strand, RNAz p=0.692962

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               111-1506, gnl|bosTau2|chr9 (44873347-44871985)
               

               
               111-1506, gnl|Hg17|chr6 (138786292-138784945)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               111-1506, gnl|bosTau2|chr9 (44873347-44871985)
               

               
               111-1506, gnl|Hg17|chr6 (138786292-138784945)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               gul (0.355177)
               

               
               rec (0.346141)
               

               
               lyg (0.266205)
               

               
               mgp (0.230681)
               

               
               cut (0.169924)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lin (0.145603)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.355177)
               

               
               rec (0.346141)
               

               
               lyg (0.266205)
               

               
               mgp (0.230681)
               

               
               cut (0.169924)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lin (0.145603)

	444-563, - strand, RNAz p=0.996261
	1188-1380, - strand, RNAz p=0.692962

	111-1506, gnl\|bosTau2\|chr9 (44873347-44871985)
	111-1506, gnl\|Hg17\|chr6 (138786292-138784945)

	gul (0.355177)
	rec (0.346141)
	lyg (0.266205)
	mgp (0.230681)
	cut (0.169924)
	ski (0.146735)
	liv (0.146284)
	lin (0.145603)