Non-Coding RNA Search

Ss1.1-Pig4-TMW8045J21.3

Sequence:


               
               GGCTGGACTGAGGCCTGAGCGCTCCTGCCATAGAGCCGGCCGCGCCAAATAATGTCTCTA
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTTCCAGGCGGGTT
CTGATTTGGGATGGATTTGGTTTTGTTCCCCCCCCCCCTTTTTTTTTTCTATTTTTTAAC
TGGTGTTTTGTCTTTGATTCTTCTTCAGCCCTCACCCTGGCCTTCATCTTTCTTGATTGA
TATCTTTGCTTTCTTCTATCTCCTCTCCCCAGATTCCTTAGTTCCTCTCCAACTTGGGGA
CTCTGGGTGAATTGTGTGGAGAAGCCCCAGGCCCAAAATTCTATCTGCTCTCCTTCCTTG
ATCCCAGAGTGGGGGGGTGGGAGAAGAGGGTGGCAACCCAGGCCCCCCAGCACTGAGGAA
GAATGGGGCTCCTGGGGCCTGAGCTCTGACCGCCCCCACACACAGTTTTCCCCTGCCCCC
AGGACTCGGCCACTTCTGAGTGGGGCAGGGGATTCTAGCTCGGCTCATACTGAGAATGTA
AGAACTACAAACGAAATTTCTATTAAATTAAGTTTTGTGTCTTCAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTGGACTGAGGCCTGAGCGCTCCTGCCATAGAGCCGGCCGCGCCAAATAATGTCTCTA
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTTCCAGGCGGGTT
CTGATTTGGGATGGATTTGGTTTTGTTCCCCCCCCCCCTTTTTTTTTTCTATTTTTTAAC
TGGTGTTTTGTCTTTGATTCTTCTTCAGCCCTCACCCTGGCCTTCATCTTTCTTGATTGA
TATCTTTGCTTTCTTCTATCTCCTCTCCCCAGATTCCTTAGTTCCTCTCCAACTTGGGGA
CTCTGGGTGAATTGTGTGGAGAAGCCCCAGGCCCAAAATTCTATCTGCTCTCCTTCCTTG
ATCCCAGAGTGGGGGGGTGGGAGAAGAGGGTGGCAACCCAGGCCCCCCAGCACTGAGGAA
GAATGGGGCTCCTGGGGCCTGAGCTCTGACCGCCCCCACACACAGTTTTCCCCTGCCCCC
AGGACTCGGCCACTTCTGAGTGGGGCAGGGGATTCTAGCTCGGCTCATACTGAGAATGTA
AGAACTACAAACGAAATTTCTATTAAATTAAGTTTTGTGTCTTCAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               307-582, - strand, RNAz p=0.868068

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               307-582, - strand, RNAz p=0.868068

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               98-600, gnl|bosTau2|chr17 (15562437-15561929)
               

               
               98-600, gnl|Hg17|chr19 (12915818-12916304)
               

               
               98-600, gnl|Mm7|chr8 (83428661-83428201)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               98-600, gnl|bosTau2|chr17 (15562437-15561929)
               

               
               98-600, gnl|Hg17|chr19 (12915818-12916304)
               

               
               98-600, gnl|Mm7|chr8 (83428661-83428201)

Expressed library(ies): 40 entry(ies)

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Expressed library(ies): 40 entry(ies)

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               amn (0.835422)
               

               
               cov (0.792917)
               

               
               nep (0.7357)
               

               
               ese (0.632511)
               

               
               ebs (0.591506)
               

               
               hyp (0.42851)
               

               
               pty (0.428143)
               

               
               nca (0.410621)
               

               
               ute (0.398353)
               

               
               jej (0.395687)
               

               
               elu (0.385356)
               

               
               nlu (0.383362)
               

               
               med (0.348756)
               

               
               mcp (0.341297)
               

               
               cli (0.305623)
               

               
               cag (0.302389)
               

               
               eje (0.296501)
               

               
               clu (0.239292)
               

               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               jca (0.22792)
               

               
               nms (0.213858)
               

               
               cty (0.20816)
               

               
               fcc (0.197785)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               eli (0.151814)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               nmm (0.132802)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               nbm (0.0993246)

Expressed library(ies): 40 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.835422)
               

               
               cov (0.792917)
               

               
               nep (0.7357)
               

               
               ese (0.632511)
               

               
               ebs (0.591506)
               

               
               hyp (0.42851)
               

               
               pty (0.428143)
               

               
               nca (0.410621)
               

               
               ute (0.398353)
               

               
               jej (0.395687)
               

               
               elu (0.385356)
               

               
               nlu (0.383362)
               

               
               med (0.348756)
               

               
               mcp (0.341297)
               

               
               cli (0.305623)
               

               
               cag (0.302389)
               

               
               eje (0.296501)
               

               
               clu (0.239292)
               

               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               jca (0.22792)
               

               
               nms (0.213858)
               

               
               cty (0.20816)
               

               
               fcc (0.197785)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               eli (0.151814)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               nmm (0.132802)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               nbm (0.0993246)

	98-600, gnl\|bosTau2\|chr17 (15562437-15561929)
	98-600, gnl\|Hg17\|chr19 (12915818-12916304)
	98-600, gnl\|Mm7\|chr8 (83428661-83428201)

	amn (0.835422)
	cov (0.792917)
	nep (0.7357)
	ese (0.632511)
	ebs (0.591506)
	hyp (0.42851)
	pty (0.428143)
	nca (0.410621)
	ute (0.398353)
	jej (0.395687)
	elu (0.385356)
	nlu (0.383362)
	med (0.348756)
	mcp (0.341297)
	cli (0.305623)
	cag (0.302389)
	eje (0.296501)
	clu (0.239292)
	ecc (0.23007)
	ece (0.229305)
	jca (0.22792)
	nms (0.213858)
	cty (0.20816)
	fcc (0.197785)
	fty (0.17584)
	ill (0.175593)
	ton (0.1755)
	fbs (0.175346)
	duo (0.172801)
	eye (0.170503)
	nco (0.161734)
	csp (0.161186)
	eli (0.151814)
	lnt (0.142308)
	hlv (0.139256)
	nmm (0.132802)
	eep (0.122564)
	eru (0.120048)
	pgl (0.118483)
	nbm (0.0993246)