Ss1.1-Pig4-TMW8045J23.3
|
GAGCTGAGATAAGCTGCCGCCGCCGCCGCCGCCGACGCCGCTGCAGGGTGTGGAGCCCGC
CGCCGCTCGCGGGCTGCGCGTCTGCCGCCGCCGCCGCTGCTGCCCAGCCTCCGCCATGGA
CCTGTTCGGGGACCTGCCGGAGCCCGAGCGCTCGCCGCGCCCTGCTGCCGGGAAAGAAGC
TCAGAAAGGATCTCTGCTCTTTGACGGCCTCCCTCCAGCCAGCAGTGCTGACTCAGGATC
AGGGGGACCTTTGCTTTTTGATGATCTCCCACCAGCCAGCAGTGGCGATGCAGGTTCTCT
CGACGCTTCGCCGTCCCAGACGGGAAAGAACGAAGGGAAAGGAGCCAAGAGAAAGACCTC
TGAAGAAGAGAAGAATGGCAGTGAAGAGCTTGTGGAAAAGAAAGTTTGTAAAGCCTCTTC
GGCGATCTTTGGTTTGAAAGGCTACGTGGCTGAGCGGAAGGGCGAGCGGGAGGAGATGCA
GGACGCGCACGTCATCCTCAACGACATCACCGAGGAGTGCCGGCCGCCCTCCTCCCTCAT
TACCCGGGTTTCATATTTTGCTGTTTTTGATGGACATGGAGGAATTCGTGCCTCAAAATT
TGCTGCACAGAATTTGCATCAGAACTTGATCAGGAAATTTCCTAAAGGAGACGTCATCAG
TGTAGAGAAAACCGTGAAAAGATGCCTTCTGGACACTTTCAAGCACACGGACGAAGAGTT
CCTCAAGCAGGCTTCCAGCCAGAAGCCTGCCTGGAAAGATGGGTCCACCGCCACGTGCGT
TCTGGCTGTAGACAACACCCTTTACATCGCCAACCTCGGAGACAGTCGGGCAATCCTGTG
TCGTTACAACGAGGAGAGTCAAAAACATGCAGCCTTAAGCCTCAGCAAGGAGCATAATCC
AACCCAGTATGAGGAACGCATGAGAATACAAAAGGCTGGCGGGAATGTCAGGGACGGGCG
CGTCCTGGGCGTGCTGGAGGTGTCCCGCTCCATCGGGGACGGGCAGTACAAGCGCTGCGG
GGTGACGTCTGTGCCGGACATCAGACGCTGCCAGCTGACCCCCAATGACAGGTTTATCTT
GCTGGCCTGCGACGGCCTCTTCAAGGTCTTTACCCCGGAGGAAGCCGTCCACTTCATCTT
GTCCTGCCTTGAGGACGAGAAGATCCAGAGCCGGGAAGGGAAGCCCGCCGTGGACGCCCG
CTACGAAGCCGCCTGCAACCGGCTGGCCACCAAGGCGGTGCAGCGGGGCTCCGCAGACAA
CGTGACGGTGATGGTGGTGCGGATAGGGCGCTGAGGCCGGGCCGGGGCTGCGTGCCCTGG
GCTTCCCCGGGCCCGTCGGTGTCTGGTGCGCATTGTGTGTTTCATGCGCTCTGGTGGGCT
GCCCGTGGTTGTAAATAAAGGTTTCTCTCTTTTCTAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GAGCTGAGATAAGCTGCCGCCGCCGCCGCCGCCGACGCCGCTGCAGGGTGTGGAGCCCGC
CGCCGCTCGCGGGCTGCGCGTCTGCCGCCGCCGCCGCTGCTGCCCAGCCTCCGCCATGGA
CCTGTTCGGGGACCTGCCGGAGCCCGAGCGCTCGCCGCGCCCTGCTGCCGGGAAAGAAGC
TCAGAAAGGATCTCTGCTCTTTGACGGCCTCCCTCCAGCCAGCAGTGCTGACTCAGGATC
AGGGGGACCTTTGCTTTTTGATGATCTCCCACCAGCCAGCAGTGGCGATGCAGGTTCTCT
CGACGCTTCGCCGTCCCAGACGGGAAAGAACGAAGGGAAAGGAGCCAAGAGAAAGACCTC
TGAAGAAGAGAAGAATGGCAGTGAAGAGCTTGTGGAAAAGAAAGTTTGTAAAGCCTCTTC
GGCGATCTTTGGTTTGAAAGGCTACGTGGCTGAGCGGAAGGGCGAGCGGGAGGAGATGCA
GGACGCGCACGTCATCCTCAACGACATCACCGAGGAGTGCCGGCCGCCCTCCTCCCTCAT
TACCCGGGTTTCATATTTTGCTGTTTTTGATGGACATGGAGGAATTCGTGCCTCAAAATT
TGCTGCACAGAATTTGCATCAGAACTTGATCAGGAAATTTCCTAAAGGAGACGTCATCAG
TGTAGAGAAAACCGTGAAAAGATGCCTTCTGGACACTTTCAAGCACACGGACGAAGAGTT
CCTCAAGCAGGCTTCCAGCCAGAAGCCTGCCTGGAAAGATGGGTCCACCGCCACGTGCGT
TCTGGCTGTAGACAACACCCTTTACATCGCCAACCTCGGAGACAGTCGGGCAATCCTGTG
TCGTTACAACGAGGAGAGTCAAAAACATGCAGCCTTAAGCCTCAGCAAGGAGCATAATCC
AACCCAGTATGAGGAACGCATGAGAATACAAAAGGCTGGCGGGAATGTCAGGGACGGGCG
CGTCCTGGGCGTGCTGGAGGTGTCCCGCTCCATCGGGGACGGGCAGTACAAGCGCTGCGG
GGTGACGTCTGTGCCGGACATCAGACGCTGCCAGCTGACCCCCAATGACAGGTTTATCTT
GCTGGCCTGCGACGGCCTCTTCAAGGTCTTTACCCCGGAGGAAGCCGTCCACTTCATCTT
GTCCTGCCTTGAGGACGAGAAGATCCAGAGCCGGGAAGGGAAGCCCGCCGTGGACGCCCG
CTACGAAGCCGCCTGCAACCGGCTGGCCACCAAGGCGGTGCAGCGGGGCTCCGCAGACAA
CGTGACGGTGATGGTGGTGCGGATAGGGCGCTGAGGCCGGGCCGGGGCTGCGTGCCCTGG
GCTTCCCCGGGCCCGTCGGTGTCTGGTGCGCATTGTGTGTTTCATGCGCTCTGGTGGGCT
GCCCGTGGTTGTAAATAAAGGTTTCTCTCTTTTCTAAAAAAAAAAAAA
|
|
gi|4325049|gb|AAD17234.1| |
Protein identifier
|
gi|4325049|gb|AAD17234.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
13-174, gnl|bosTau2|chr3 (84591426-84591271) |
|
13-174, gnl|canFam2|chr25 (51712018-51712344) |
|
13-174, gnl|hg17|chr2 (238894090-238894451) |
|
13-174, gnl|Hg17|chr2 (238894301-238894136) |
|
13-174, gnl|mm7|chr1 (91306061-91306318) |
|
13-174, gnl|panTro1|chr13_random (34528686-34529047) |
|
13-174, gnl|rheMac2|chr12 (102070161-102070542) |
|
13-174, gnl|rn3|chr9 (90831388-90831660) |
| |
|
412-538, gnl|bosTau2|chr3 (84579555-84579429) |
|
412-538, gnl|Hg17|chr2 (238878900-238878774) |
|
412-538, gnl|Mm7|chr1 (91294788-91294662) |
| |
|
542-651, gnl|bosTau2|chr3 (84578378-84578269) |
|
542-651, gnl|Hg17|chr2 (238875927-238875818) |
|
542-651, gnl|Mm7|chr1 (91292790-91292681) |
| |
|
829-952, gnl|bosTau2|chr3 (84576146-84576023) |
|
829-952, gnl|Hg17|chr2 (238872828-238872705) |
|
829-952, gnl|Mm7|chr1 (91289418-91289295) |
| |
|
1138-1410, gnl|bosTau2|chr3 (84567363-84567093) |
|
1138-1410, gnl|Hg17|chr2 (238861333-238861044) |
|
1138-1410, gnl|Mm7|chr1 (91283541-91283281) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
13-174, gnl|bosTau2|chr3 (84591426-84591271) |
|
13-174, gnl|canFam2|chr25 (51712018-51712344) |
|
13-174, gnl|hg17|chr2 (238894090-238894451) |
|
13-174, gnl|Hg17|chr2 (238894301-238894136) |
|
13-174, gnl|mm7|chr1 (91306061-91306318) |
|
13-174, gnl|panTro1|chr13_random (34528686-34529047) |
|
13-174, gnl|rheMac2|chr12 (102070161-102070542) |
|
13-174, gnl|rn3|chr9 (90831388-90831660) |
| |
|
412-538, gnl|bosTau2|chr3 (84579555-84579429) |
|
412-538, gnl|Hg17|chr2 (238878900-238878774) |
|
412-538, gnl|Mm7|chr1 (91294788-91294662) |
| |
|
542-651, gnl|bosTau2|chr3 (84578378-84578269) |
|
542-651, gnl|Hg17|chr2 (238875927-238875818) |
|
542-651, gnl|Mm7|chr1 (91292790-91292681) |
| |
|
829-952, gnl|bosTau2|chr3 (84576146-84576023) |
|
829-952, gnl|Hg17|chr2 (238872828-238872705) |
|
829-952, gnl|Mm7|chr1 (91289418-91289295) |
| |
|
1138-1410, gnl|bosTau2|chr3 (84567363-84567093) |
|
1138-1410, gnl|Hg17|chr2 (238861333-238861044) |
|
1138-1410, gnl|Mm7|chr1 (91283541-91283281) |
|
fty (0.351679) |
|
lnt (0.284616) |
|
ese (0.253004) |
|
nbm (0.198649) |
|
fcc (0.197785) |
|
duo (0.172801) |
|
mcp (0.170648) |
|
csp (0.161186) |
|
spl (0.143184) |
|
cst (0.140036) |
|
nmm (0.132802) |
|
fty (0.351679) |
|
lnt (0.284616) |
|
ese (0.253004) |
|
nbm (0.198649) |
|
fcc (0.197785) |
|
duo (0.172801) |
|
mcp (0.170648) |
|
csp (0.161186) |
|
spl (0.143184) |
|
cst (0.140036) |
|
nmm (0.132802) |
