Ss1.1-Pig4-TMW8045J24.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACCAACAAGGAGGGCATCCCCATGCGCAAGGGCGAGCACCTGGGCGAGTTCAACCTGGGC TCCACCATCGTGCTCATCTTTGAGGCCCCCAAGGACTTCAACTTCAAGCTGAAAGCAGGA CAGAAAATCCGATTTGGGGAGGCTCTGGGCTCCCTCTAGAGCCTCTTTTGTGGCCATTGC TGCTGAGGGATCTTTTCCAGAGAAATGTGAAGGTCTTTTCAAGGGGAACCTCTGAGGCTG TCTGGGGAGGGGACCATTGGGTCTGGCCAGGCAGGACCTGGGTGACTTCTGTCCCCACTG TTGGGACAAAGTGGTCAGCATCCCGTCACGCCCTTGCCCTACGTCGTCCCCTTTCCCACC TGAGATAAGGTGCACACAAGGATGATGGAGTCCCTCTTGGAGACTTTCTCATGTGCTGTA TAAACTGGAGACCCTGGCCAAGCGTTCACTTGGTCTCAATTTCCATTTTAAGTGGTAGTA AAGTACCTTCTTGCTGCTCTCTTATCCCTGCTTTTTGGTCTCCCTTGCACAGGGTGAGGT GCCTACCAGCACTGACTGTGGGCCTGCACGGCCCGAGACCAGGGCCATTGAGCCTTTAAT GCAACTGCTTTCTGTTTCCAGATTTGCCCCACCCTGCTTGTTGGGAAAAGCCGTCTTTCC TCTTTGCACACATGGCTGAACACCTCACCCGCAACCCTGCTAGCAGCTTCTGAGGGTGGC CATCCAATGGCTTGGTGCTTTGCATGCCCAGATGAGTGACCTTCCAGAGCGGACAAGTCC TCTTTCCAGTAGGCAGGGCCCATTACCAAACCTCCTTCAGTGGTGTCTAAAGCAAGTGGG GCAGGCAGCTGGGGCAAGGGGGAGCTTGTTGTCTCACCCCATATCCAGACCTACATAAAA TAGGGAAACATTGCTGCTATTGATCAGGGGCTTGTGTTGGAGGCAGAGGAACCTTGGTGT ATTTGGTGGGGGGGAGAGGGGGAGGGTGTCAGTGCCTAGAAAACCTGTTCCCAGGTAACA ACAGGTACGTAGCCTTGGGGAGCCACTGAGGGGGACAGAGCCAGGTTTCATGTTTCCTGG GGACACTGTGAATTTCTCCTGCAGGAGAAGCCATTTGAACTTTTTCAACTGTATCAGTAG CACAGTATTTTTGTATGAAAAGTGGGAGACTTCTGAACAGTGATTCATTTAATTGCAACA TTTTGGAATAAAAACTCATTGCAGAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACCAACAAGGAGGGCATCCCCATGCGCAAGGGCGAGCACCTGGGCGAGTTCAACCTGGGC TCCACCATCGTGCTCATCTTTGAGGCCCCCAAGGACTTCAACTTCAAGCTGAAAGCAGGA CAGAAAATCCGATTTGGGGAGGCTCTGGGCTCCCTCTAGAGCCTCTTTTGTGGCCATTGC TGCTGAGGGATCTTTTCCAGAGAAATGTGAAGGTCTTTTCAAGGGGAACCTCTGAGGCTG TCTGGGGAGGGGACCATTGGGTCTGGCCAGGCAGGACCTGGGTGACTTCTGTCCCCACTG TTGGGACAAAGTGGTCAGCATCCCGTCACGCCCTTGCCCTACGTCGTCCCCTTTCCCACC TGAGATAAGGTGCACACAAGGATGATGGAGTCCCTCTTGGAGACTTTCTCATGTGCTGTA TAAACTGGAGACCCTGGCCAAGCGTTCACTTGGTCTCAATTTCCATTTTAAGTGGTAGTA AAGTACCTTCTTGCTGCTCTCTTATCCCTGCTTTTTGGTCTCCCTTGCACAGGGTGAGGT GCCTACCAGCACTGACTGTGGGCCTGCACGGCCCGAGACCAGGGCCATTGAGCCTTTAAT GCAACTGCTTTCTGTTTCCAGATTTGCCCCACCCTGCTTGTTGGGAAAAGCCGTCTTTCC TCTTTGCACACATGGCTGAACACCTCACCCGCAACCCTGCTAGCAGCTTCTGAGGGTGGC CATCCAATGGCTTGGTGCTTTGCATGCCCAGATGAGTGACCTTCCAGAGCGGACAAGTCC TCTTTCCAGTAGGCAGGGCCCATTACCAAACCTCCTTCAGTGGTGTCTAAAGCAAGTGGG GCAGGCAGCTGGGGCAAGGGGGAGCTTGTTGTCTCACCCCATATCCAGACCTACATAAAA TAGGGAAACATTGCTGCTATTGATCAGGGGCTTGTGTTGGAGGCAGAGGAACCTTGGTGT ATTTGGTGGGGGGGAGAGGGGGAGGGTGTCAGTGCCTAGAAAACCTGTTCCCAGGTAACA ACAGGTACGTAGCCTTGGGGAGCCACTGAGGGGGACAGAGCCAGGTTTCATGTTTCCTGG GGACACTGTGAATTTCTCCTGCAGGAGAAGCCATTTGAACTTTTTCAACTGTATCAGTAG CACAGTATTTTTGTATGAAAAGTGGGAGACTTCTGAACAGTGATTCATTTAATTGCAACA TTTTGGAATAAAAACTCATTGCAGAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 497-636, - strand, RNAz p=0.907548 | |
| 570-686, - strand, RNAz p=0.622338 | |
| 960-1176, + strand, RNAz p=0.990081 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 497-636, - strand, RNAz p=0.907548 | |
| 570-686, - strand, RNAz p=0.622338 | |
| 960-1176, + strand, RNAz p=0.990081 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of CR596708, - |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 2-231, gnl|bosTau2|chr17 (43199947-43199721) | |
| 2-231, gnl|Hg17|chr22 (30340309-30340018) | |
| 2-231, gnl|Mm7|chr5 (31800132-31799900) | |
| 248-770, gnl|bosTau2|chr17 (43199752-43199214) | |
| 248-770, gnl|canFam2|chr26 (27532256-27532711) | |
| 248-770, gnl|dasNov1|scaffold_62176 (3614-3170) | |
| 248-770, gnl|echTel1|scaffold_195490 (4412-4004) | |
| 248-770, gnl|hg17|chr22 (30339354-30339848) | |
| 248-770, gnl|Hg17|chr22 (30340090-30339487) | |
| 248-770, gnl|loxAfr1|scaffold_389 (229144-229646) | |
| 248-770, gnl|mm7|chr11 (3083660-3083271) | |
| 248-770, gnl|Mm7|chr5 (31799938-31799413) | |
| 248-770, gnl|panTro1|chr23 (30442283-30442776) | |
| 248-770, gnl|rheMac2|chr10 (75510106-75510584) | |
| 248-770, gnl|rn3|chr14 (83751437-83751015) | |
| 846-1212, gnl|bosTau2|chr17 (43199177-43198785) | |
| 846-1212, gnl|canFam2|chr26 (27531941-27532165) | |
| 846-1212, gnl|dasNov1|scaffold_62176 (3924-3689) | |
| 846-1212, gnl|echTel1|scaffold_195490 (4668-4434) | |
| 846-1212, gnl|galGal2|chr15 (8888066-8887816) | |
| 846-1212, gnl|hg17|chr22 (30339047-30339281) | |
| 846-1212, gnl|Hg17|chr22 (30339397-30339048) | |
| 846-1212, gnl|loxAfr1|scaffold_389 (228833-229068) | |
| 846-1212, gnl|mm7|chr11 (3083933-3083721) | |
| 846-1212, gnl|monDom2|scaffold_141 (424500-424690) | |
| 846-1212, gnl|panTro1|chr23 (30441977-30442210) | |
| 846-1212, gnl|rheMac2|chr10 (75509800-75510033) | |
| 846-1212, gnl|rn3|chr14 (83751712-83751497) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-231, gnl|bosTau2|chr17 (43199947-43199721) | |
| 2-231, gnl|Hg17|chr22 (30340309-30340018) | |
| 2-231, gnl|Mm7|chr5 (31800132-31799900) | |
| 248-770, gnl|bosTau2|chr17 (43199752-43199214) | |
| 248-770, gnl|canFam2|chr26 (27532256-27532711) | |
| 248-770, gnl|dasNov1|scaffold_62176 (3614-3170) | |
| 248-770, gnl|echTel1|scaffold_195490 (4412-4004) | |
| 248-770, gnl|hg17|chr22 (30339354-30339848) | |
| 248-770, gnl|Hg17|chr22 (30340090-30339487) | |
| 248-770, gnl|loxAfr1|scaffold_389 (229144-229646) | |
| 248-770, gnl|mm7|chr11 (3083660-3083271) | |
| 248-770, gnl|Mm7|chr5 (31799938-31799413) | |
| 248-770, gnl|panTro1|chr23 (30442283-30442776) | |
| 248-770, gnl|rheMac2|chr10 (75510106-75510584) | |
| 248-770, gnl|rn3|chr14 (83751437-83751015) | |
| 846-1212, gnl|bosTau2|chr17 (43199177-43198785) | |
| 846-1212, gnl|canFam2|chr26 (27531941-27532165) | |
| 846-1212, gnl|dasNov1|scaffold_62176 (3924-3689) | |
| 846-1212, gnl|echTel1|scaffold_195490 (4668-4434) | |
| 846-1212, gnl|galGal2|chr15 (8888066-8887816) | |
| 846-1212, gnl|hg17|chr22 (30339047-30339281) | |
| 846-1212, gnl|Hg17|chr22 (30339397-30339048) | |
| 846-1212, gnl|loxAfr1|scaffold_389 (228833-229068) | |
| 846-1212, gnl|mm7|chr11 (3083933-3083721) | |
| 846-1212, gnl|monDom2|scaffold_141 (424500-424690) | |
| 846-1212, gnl|panTro1|chr23 (30441977-30442210) | |
| 846-1212, gnl|rheMac2|chr10 (75509800-75510033) | |
| 846-1212, gnl|rn3|chr14 (83751712-83751497) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| ecc (0.46014) | |
| eli (0.303628) | |
| cst (0.280073) | |
| fce (0.271592) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| nmm (0.132802) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ecc (0.46014) | |
| eli (0.303628) | |
| cst (0.280073) | |
| fce (0.271592) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| nmm (0.132802) |