Non-Coding RNA Search

Ss1.1-Pig4-TMW8045K03.3

Sequence:


               
               GCCAGGCAATTTGCCAGTGAAGACTTTGTGGGTAGTTCAGAACACGTGTCACCTCAGCTG
ATGCTGTGGGCAGGTGATGTCATCCTCTCTTCAGCCCCCAGTGCTATTTTGTGTTGAACA
CAATTGATACTCCAGGTGCTTTTGATGTGAAAACTATGAAGAAACAGAACAGGTGGATGT
ATAGCATTTTCATTCTTGCCATCTGGTTTTCAACAAATGACTTTGAGGGAGCTGTCAACC
AGGAAAGATCAGGGCTTGTCCCAGGAATATCTCGGACTTTGGAAAACAGGTTGTTCTCTT
CACTCCCATTAACCAATGCTAAGAAATTCTGAAAATCAACGTGAAAAATAAAAGCTCATG
AGGCCAGAAACTCCTTTTCCTGTCTTTGTCTAAATATGGTTATTTTTTAAAAAAGTAATG
AGGTGTCTTTTCCACCCTCCTTTGGAAAAAGGGTCTTCTTGGCAGCTTAACATTGACTTC
TTGGTCTTGGTTTGAGGAGAAATAAATTTTGTTTCAGAATTTTGTATATTGCAGGAATCC
TTTGAGAATGTGATTCCTTTTGATGGGGAGAGAGGGCAAATTATTTTAATATTTTGTATT
TTCAACTTTATAAAGATGAAATATCCTCAGGGGTGGAGAAGAGTTGTTTTCATAATTTTC
TGAATTTCAGGCATCTTGTGCTACATAAGGGCCCATGTATTTAAACCTTTTGTGAAAGAA
GAAAGTGCAGAGCCATTTCCAGTGTTGACCAGGTGACAGAATCTTGTGTTTGGGCCAAGG
TGTCTCCATTTCTGTCACAGTGCAGTGATACATGAACTCCAGAAGGACAGGGTAGAACCC
CCAAGTCAACTGGAGCGAGAAGGAAGGAGGCAGCCAGTGGCCATCGCGCCTCACCTGGCA
TTTGCCCCCTCGTTAAAGGAAAGTGAATGCAAAGGCCTCATCTCCTCTGTATGCACTTCA
GATCTTCACAGTCCACACAGCAAGATGAATTTTATCAGCCATGTTCTGCTGTAAATGCTA
GTGTGATTTCCTACAGAAATACCACTCTGAATATTTTTTCATAAAGGTCTTTGCACAGGG
GACCGTATCCATGCTAAGAGGCTGAATGCTCCAGGAGTCCGGACTCAGCTGGAGCCTGCG
CCAGAGCTCCTTGGTTTCCGAGCATAATGCTCCATCTCCTGATTTCTCTGAACAGAAAGC
AAAAGAGAGAATGAGGGAATATGCTATTTTATTTGTATTCATGATCTTGGCTGTAATCAG
TTATGCCATATAGGATGTCATACAATACCACTGGTTAAAATAAAGCCTATTTTTCAAATT
TAGTGAGTTTCTCAAGTTTATTCTGTTTTCTCTTGGTTGTTTTTATGTAATGCACAACAT
AGCATTATATATCATAATATTGTATAAAATTATATGTCTTTCAGCTGTGGCCTGGTATAC
GTTTCTGATAGATCTTACTATTGCTCCTAAAATGTGCAAAACATTTATAGAGCTCCTTAA
TAGTACACTTTGTGGTGAAGCAGATCAGAGTCTTTGATGTGGACAGGCAGAAGAGCAAGG
AGCAAATAAAAAAGGTATGACAGTATAGGCTCTGGTGTTTCTACACTTGGGTATCAGAGT
GGCCTAAGACAGGGGTCAGCATACTCTGTGGCCCAGGAACCAAATCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCAGGCAATTTGCCAGTGAAGACTTTGTGGGTAGTTCAGAACACGTGTCACCTCAGCTG
ATGCTGTGGGCAGGTGATGTCATCCTCTCTTCAGCCCCCAGTGCTATTTTGTGTTGAACA
CAATTGATACTCCAGGTGCTTTTGATGTGAAAACTATGAAGAAACAGAACAGGTGGATGT
ATAGCATTTTCATTCTTGCCATCTGGTTTTCAACAAATGACTTTGAGGGAGCTGTCAACC
AGGAAAGATCAGGGCTTGTCCCAGGAATATCTCGGACTTTGGAAAACAGGTTGTTCTCTT
CACTCCCATTAACCAATGCTAAGAAATTCTGAAAATCAACGTGAAAAATAAAAGCTCATG
AGGCCAGAAACTCCTTTTCCTGTCTTTGTCTAAATATGGTTATTTTTTAAAAAAGTAATG
AGGTGTCTTTTCCACCCTCCTTTGGAAAAAGGGTCTTCTTGGCAGCTTAACATTGACTTC
TTGGTCTTGGTTTGAGGAGAAATAAATTTTGTTTCAGAATTTTGTATATTGCAGGAATCC
TTTGAGAATGTGATTCCTTTTGATGGGGAGAGAGGGCAAATTATTTTAATATTTTGTATT
TTCAACTTTATAAAGATGAAATATCCTCAGGGGTGGAGAAGAGTTGTTTTCATAATTTTC
TGAATTTCAGGCATCTTGTGCTACATAAGGGCCCATGTATTTAAACCTTTTGTGAAAGAA
GAAAGTGCAGAGCCATTTCCAGTGTTGACCAGGTGACAGAATCTTGTGTTTGGGCCAAGG
TGTCTCCATTTCTGTCACAGTGCAGTGATACATGAACTCCAGAAGGACAGGGTAGAACCC
CCAAGTCAACTGGAGCGAGAAGGAAGGAGGCAGCCAGTGGCCATCGCGCCTCACCTGGCA
TTTGCCCCCTCGTTAAAGGAAAGTGAATGCAAAGGCCTCATCTCCTCTGTATGCACTTCA
GATCTTCACAGTCCACACAGCAAGATGAATTTTATCAGCCATGTTCTGCTGTAAATGCTA
GTGTGATTTCCTACAGAAATACCACTCTGAATATTTTTTCATAAAGGTCTTTGCACAGGG
GACCGTATCCATGCTAAGAGGCTGAATGCTCCAGGAGTCCGGACTCAGCTGGAGCCTGCG
CCAGAGCTCCTTGGTTTCCGAGCATAATGCTCCATCTCCTGATTTCTCTGAACAGAAAGC
AAAAGAGAGAATGAGGGAATATGCTATTTTATTTGTATTCATGATCTTGGCTGTAATCAG
TTATGCCATATAGGATGTCATACAATACCACTGGTTAAAATAAAGCCTATTTTTCAAATT
TAGTGAGTTTCTCAAGTTTATTCTGTTTTCTCTTGGTTGTTTTTATGTAATGCACAACAT
AGCATTATATATCATAATATTGTATAAAATTATATGTCTTTCAGCTGTGGCCTGGTATAC
GTTTCTGATAGATCTTACTATTGCTCCTAAAATGTGCAAAACATTTATAGAGCTCCTTAA
TAGTACACTTTGTGGTGAAGCAGATCAGAGTCTTTGATGTGGACAGGCAGAAGAGCAAGG
AGCAAATAAAAAAGGTATGACAGTATAGGCTCTGGTGTTTCTACACTTGGGTATCAGAGT
GGCCTAAGACAGGGGTCAGCATACTCTGTGGCCCAGGAACCAAATCCA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               752-869, - strand, RNAz p=0.549562
               

               
               1060-1210, + strand, RNAz p=0.725882

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               752-869, - strand, RNAz p=0.549562
               

               
               1060-1210, + strand, RNAz p=0.725882

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_001315, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_001315, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-1668, gnl|bosTau2|chr23 (8408230-8409870)
               

               
               1-1668, gnl|Hg17|chr6 (36185198-36186834)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1668, gnl|bosTau2|chr23 (8408230-8409870)
               

               
               1-1668, gnl|Hg17|chr6 (36185198-36186834)

Expressed library(ies): 18 entry(ies)

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Expressed library(ies): 18 entry(ies)

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               cbl (0.344392)
               

               
               fce (0.271592)
               

               
               thg (0.253582)
               

               
               mgp (0.230681)
               

               
               tes (0.207814)
               

               
               nbm (0.198649)
               

               
               nlu (0.191681)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               lun (0.150489)
               

               
               pty (0.142714)
               

               
               ova (0.129132)
               

               
               cbr (0.127975)
               

               
               bla (0.124347)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.344392)
               

               
               fce (0.271592)
               

               
               thg (0.253582)
               

               
               mgp (0.230681)
               

               
               tes (0.207814)
               

               
               nbm (0.198649)
               

               
               nlu (0.191681)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               lun (0.150489)
               

               
               pty (0.142714)
               

               
               ova (0.129132)
               

               
               cbr (0.127975)
               

               
               bla (0.124347)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

	752-869, - strand, RNAz p=0.549562
	1060-1210, + strand, RNAz p=0.725882

	1-1668, gnl\|bosTau2\|chr23 (8408230-8409870)
	1-1668, gnl\|Hg17\|chr6 (36185198-36186834)

	cbl (0.344392)
	fce (0.271592)
	thg (0.253582)
	mgp (0.230681)
	tes (0.207814)
	nbm (0.198649)
	nlu (0.191681)
	sin (0.174948)
	duo (0.172801)
	cut (0.169924)
	lun (0.150489)
	pty (0.142714)
	ova (0.129132)
	cbr (0.127975)
	bla (0.124347)
	med (0.116252)
	ecc (0.115035)
	ldo (0.0970026)