Ss1.1-Pig4-TMW8045K07.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGCAGCCGCAGGCATGGCGGCGGCGGTGCCGCTTTTTCTGTCGGTGCTGCTGCTCCTGG GGCCTGGCAGCTGGAGCCAGGCAGAATCCCCACGCGATAGCCTGCGGGAGGAGCTTGTCA TCACCCCGCTGCCTTCTGGGGACGTAGCCGCCACATTCCAGTTCCGCACGCGCTGGGATT TGGATCTGCAGCGGGAAGAAGTGTCTCATTATAGGCTCTTCCCCAAAGCCCTGGGGCAGT TGATCTCCAAGTATTCTCTGCGGGAGCTGCACCTGTCATTAACCCAAGGCTTCTGGAGGA CTCGATATTGGGGGACACCCTTCATTCAGGCCCCGTCAGGTGCAGAGCTCTGGGTCTGGT TCCAAGACACTGTCACTGATGTGGATAAATCTTGGAAGGAGCTCAGTAACGTCCTCTCGG GGATCTTCTGCGCCTCTCTCAACTTCATCGACTCCACCAACACTGTCACACCCACCGCCT CCTTCAAACCCCTGGGGCTGGCCAATGGCACGGATCACTCCTTCCTGCGCTATGCGGTGC TGCCACGGGAGGTTGTCTGCACCGAGAACCTCACCCCGTGGAAGAAGCTCTTGCCCTGCA GTTCCAAGGCGGGCCTCTCGGTGCTGCTGAAGGCTGATCGCCTGTTCCACACGAGCTACC ACTCCCAGGCAGTGCATATGCGCCCTGTATGCAGAAATGCTCGCTGTACCAGCGTCTCCT GGGAGCTGAGGCAGACCCTTTCTGTTGTGTTTGATGCCTTTGTCACCGGGCAGGGAAAGA AAGACTGGTCCCTCTTCCGGATGTTCTCCCGAACCCTCACAGAGCCCTGCCCCCTGGCTG CCGAGAGCCGAGTCTACGTGGACATCACCAGCTACAGCCAGGACAATGAGACATTGGAGG TGTACCCGCTCCCCCTCACCACGTACCAGGATGTCATCCTGGGCACCCGGAGGACCTATG CTGTCTATGACTTGCTGGACTCGGCCGTGATCAACAACTCACGCAGCCTCAACCTCCAGC TCAAGTGGAAGAGACCCCCAGAGAATGAGGCCCCGCCTGTGCCCTTTCTGCATGCCCAGC GGTACGTGAGTGGCTATGGGCTGCAGAACGGGGAGCTGAGCACGCTGCTGTACAACACCC ACCCGTACCGGGCCTTCCCGGTGCTGCTGCTGGACACCGTGCCCTGGTACCTGCGGCTGT ACGTGCACACCCTCACCATCACCTCCAAGGGCAAGGAGAACAAACCAAGTTATATCCACT ACCAGCCTGCCCGGGACCGGCTGCAGCCCCACCTCCTGGAGATGCTGATTCAGCTGCCAG CCAACTCGGTCACCAAGGTCTCCATCCACTTTGAGCGGGCGCTGCTGAAGTGGACTGAGT ACACCCCGGACCCCAACCACGGCTTCTATGTCAGCCCTTCTGTCCTCAGCGCCCTCGTGC CCAGCGTGGTGGCCGCCAGACCCGTGGACTGGGACGAGAGCCCCCTCTTCAACACGCTCT TCCCAGTCTCCGACGGCTCCAGCCACTTCGTGCGGCTCTACACGGAGCCGCTGCTGGTGA ACCTGCCCACCCCGGACTTCAGCATGCCCTACAACGTCATCTGCCTCACGTGCACCGTGG TGGCCGTGTGCTACGGCTCCTTCTACAATCTCCTCACCCGAACCTTCCACATCGAGGAGC CCAGAACGGGCGGCCTGGCCAAGCGGCTGGCCAACCTGATCCGGCGCGCCCGGGGCGTCC CGCCGCTCTGAGACCCCGCACGCCGCCCGGCTGCCGCATCTCCCTGTCTTGCTGCCACCT GCTCTCCGCAGAGGTGGCTTCGGAACCACATGGACCCCTGGACTGGGCCAGGGCCCAGAG CTGCACTGTGCAGTGCGGGAAGCATGAGCGGAGACATGGCATTTGACTTTAATTTAAATT GAAAGTGCGTTTCCTCAGCTGTTCCAGCCACATTTCAAGGGCTCGGTCACCAAAACTGAT GAGTGACCGCTGTACCGGCGGCTCGACAAGTGTTTCCATCATCCCAGAAGGTTCTGTGGG TCAGCCCTGGCCTGGATCACTGGGCAAGCTCAAGAATTGGTTATCACTGTGTGGGAGGTG GAATTTACTGGTTGTGGAATAAAAAGTGTCTACATCCTTGAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGCAGCCGCAGGCATGGCGGCGGCGGTGCCGCTTTTTCTGTCGGTGCTGCTGCTCCTGG GGCCTGGCAGCTGGAGCCAGGCAGAATCCCCACGCGATAGCCTGCGGGAGGAGCTTGTCA TCACCCCGCTGCCTTCTGGGGACGTAGCCGCCACATTCCAGTTCCGCACGCGCTGGGATT TGGATCTGCAGCGGGAAGAAGTGTCTCATTATAGGCTCTTCCCCAAAGCCCTGGGGCAGT TGATCTCCAAGTATTCTCTGCGGGAGCTGCACCTGTCATTAACCCAAGGCTTCTGGAGGA CTCGATATTGGGGGACACCCTTCATTCAGGCCCCGTCAGGTGCAGAGCTCTGGGTCTGGT TCCAAGACACTGTCACTGATGTGGATAAATCTTGGAAGGAGCTCAGTAACGTCCTCTCGG GGATCTTCTGCGCCTCTCTCAACTTCATCGACTCCACCAACACTGTCACACCCACCGCCT CCTTCAAACCCCTGGGGCTGGCCAATGGCACGGATCACTCCTTCCTGCGCTATGCGGTGC TGCCACGGGAGGTTGTCTGCACCGAGAACCTCACCCCGTGGAAGAAGCTCTTGCCCTGCA GTTCCAAGGCGGGCCTCTCGGTGCTGCTGAAGGCTGATCGCCTGTTCCACACGAGCTACC ACTCCCAGGCAGTGCATATGCGCCCTGTATGCAGAAATGCTCGCTGTACCAGCGTCTCCT GGGAGCTGAGGCAGACCCTTTCTGTTGTGTTTGATGCCTTTGTCACCGGGCAGGGAAAGA AAGACTGGTCCCTCTTCCGGATGTTCTCCCGAACCCTCACAGAGCCCTGCCCCCTGGCTG CCGAGAGCCGAGTCTACGTGGACATCACCAGCTACAGCCAGGACAATGAGACATTGGAGG TGTACCCGCTCCCCCTCACCACGTACCAGGATGTCATCCTGGGCACCCGGAGGACCTATG CTGTCTATGACTTGCTGGACTCGGCCGTGATCAACAACTCACGCAGCCTCAACCTCCAGC TCAAGTGGAAGAGACCCCCAGAGAATGAGGCCCCGCCTGTGCCCTTTCTGCATGCCCAGC GGTACGTGAGTGGCTATGGGCTGCAGAACGGGGAGCTGAGCACGCTGCTGTACAACACCC ACCCGTACCGGGCCTTCCCGGTGCTGCTGCTGGACACCGTGCCCTGGTACCTGCGGCTGT ACGTGCACACCCTCACCATCACCTCCAAGGGCAAGGAGAACAAACCAAGTTATATCCACT ACCAGCCTGCCCGGGACCGGCTGCAGCCCCACCTCCTGGAGATGCTGATTCAGCTGCCAG CCAACTCGGTCACCAAGGTCTCCATCCACTTTGAGCGGGCGCTGCTGAAGTGGACTGAGT ACACCCCGGACCCCAACCACGGCTTCTATGTCAGCCCTTCTGTCCTCAGCGCCCTCGTGC CCAGCGTGGTGGCCGCCAGACCCGTGGACTGGGACGAGAGCCCCCTCTTCAACACGCTCT TCCCAGTCTCCGACGGCTCCAGCCACTTCGTGCGGCTCTACACGGAGCCGCTGCTGGTGA ACCTGCCCACCCCGGACTTCAGCATGCCCTACAACGTCATCTGCCTCACGTGCACCGTGG TGGCCGTGTGCTACGGCTCCTTCTACAATCTCCTCACCCGAACCTTCCACATCGAGGAGC CCAGAACGGGCGGCCTGGCCAAGCGGCTGGCCAACCTGATCCGGCGCGCCCGGGGCGTCC CGCCGCTCTGAGACCCCGCACGCCGCCCGGCTGCCGCATCTCCCTGTCTTGCTGCCACCT GCTCTCCGCAGAGGTGGCTTCGGAACCACATGGACCCCTGGACTGGGCCAGGGCCCAGAG CTGCACTGTGCAGTGCGGGAAGCATGAGCGGAGACATGGCATTTGACTTTAATTTAAATT GAAAGTGCGTTTCCTCAGCTGTTCCAGCCACATTTCAAGGGCTCGGTCACCAAAACTGAT GAGTGACCGCTGTACCGGCGGCTCGACAAGTGTTTCCATCATCCCAGAAGGTTCTGTGGG TCAGCCCTGGCCTGGATCACTGGGCAAGCTCAAGAATTGGTTATCACTGTGTGGGAGGTG GAATTTACTGGTTGTGGAATAAAAAGTGTCTACATCCTTGAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 49 entry(ies) | More info |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
| 1-201, gnl|bosTau2|chr13 (55414586-55414386) | |
| 1-201, gnl|Hg17|chr20 (43478197-43478362) | |
| 1-201, gnl|Mm7|chr2 (164238199-164238411) | |
| 380-508, gnl|bosTau2|chr13 (55411228-55411100) | |
| 380-508, gnl|canFam2|chr24 (35686069-35686233) | |
| 380-508, gnl|danRer3|chr23 (12226804-12226673) | |
| 380-508, gnl|dasNov1|scaffold_22995 (6328-6492) | |
| 380-508, gnl|echTel1|scaffold_183967 (2545-2709) | |
| 380-508, gnl|fr1|chrUn (29494131-29493967) | |
| 380-508, gnl|galGal2|chr20 (4837716-4837546) | |
| 380-508, gnl|hg17|chr20 (43480883-43481047) | |
| 380-508, gnl|Hg17|chr20 (43480906-43481034) | |
| 380-508, gnl|loxAfr1|scaffold_19232 (6894-7056) | |
| 380-508, gnl|mm7|chr2 (164240381-164240590) | |
| 380-508, gnl|Mm7|chr2 (164240449-164240577) | |
| 380-508, gnl|monDom2|scaffold_1 (156236177-156236007) | |
| 380-508, gnl|oryCun1|scaffold_203232 (2504-2341) | |
| 380-508, gnl|panTro1|chr21 (45966276-45966440) | |
| 380-508, gnl|rheMac2|chr10 (19030994-19030830) | |
| 380-508, gnl|rn3|chr3 (155427273-155427437) | |
| 380-508, gnl|tetNig1|chr9 (1961737-1961581) | |
| 380-508, gnl|xenTro1|scaffold_35 (2056710-2056556) | |
| 782-882, gnl|bosTau2|chr13 (55409714-55409614) | |
| 782-882, gnl|canFam2|chr24 (35687630-35687747) | |
| 782-882, gnl|danRer3|chr23 (12210936-12210804) | |
| 782-882, gnl|dasNov1|scaffold_22995 (7820-7939) | |
| 782-882, gnl|echTel1|scaffold_183967 (3706-3823) | |
| 782-882, gnl|galGal2|chr20 (4835702-4835575) | |
| 782-882, gnl|hg17|chr20 (43482379-43482496) | |
| 782-882, gnl|Hg17|chr20 (43482384-43482484) | |
| 782-882, gnl|loxAfr1|scaffold_19232 (8390-8508) | |
| 782-882, gnl|mm7|chr2 (164241921-164242038) | |
| 782-882, gnl|Mm7|chr2 (164241926-164242026) | |
| 782-882, gnl|monDom2|scaffold_1 (156233693-156233579) | |
| 782-882, gnl|oryCun1|scaffold_203232 (957-841) | |
| 782-882, gnl|panTro1|chr21 (45967773-45967890) | |
| 782-882, gnl|rheMac2|chr10 (19029493-19029376) | |
| 782-882, gnl|rn3|chr3 (155428786-155428903) | |
| 782-882, gnl|tetNig1|chr9 (1960908-1960801) | |
| 782-882, gnl|xenTro1|scaffold_35 (2055167-2055044) | |
| 1047-1272, gnl|bosTau2|chr13 (55408673-55408446) | |
| 1047-1272, gnl|Hg17|chr20 (43483436-43483664) | |
| 1047-1272, gnl|Mm7|chr2 (164243131-164243359) | |
| 1499-1752, gnl|bosTau2|chr13 (55403547-55403294) | |
| 1499-1752, gnl|Hg17|chr20 (43487628-43487881) | |
| 1499-1752, gnl|Mm7|chr2 (164247929-164248182) | |
| 1787-2140, gnl|bosTau2|chr13 (55403210-55402856) | |
| 1787-2140, gnl|Hg17|chr20 (43487941-43488295) | |
| 1787-2140, gnl|Mm7|chr2 (164248626-164248955) |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-201, gnl|bosTau2|chr13 (55414586-55414386) | |
| 1-201, gnl|Hg17|chr20 (43478197-43478362) | |
| 1-201, gnl|Mm7|chr2 (164238199-164238411) | |
| 380-508, gnl|bosTau2|chr13 (55411228-55411100) | |
| 380-508, gnl|canFam2|chr24 (35686069-35686233) | |
| 380-508, gnl|danRer3|chr23 (12226804-12226673) | |
| 380-508, gnl|dasNov1|scaffold_22995 (6328-6492) | |
| 380-508, gnl|echTel1|scaffold_183967 (2545-2709) | |
| 380-508, gnl|fr1|chrUn (29494131-29493967) | |
| 380-508, gnl|galGal2|chr20 (4837716-4837546) | |
| 380-508, gnl|hg17|chr20 (43480883-43481047) | |
| 380-508, gnl|Hg17|chr20 (43480906-43481034) | |
| 380-508, gnl|loxAfr1|scaffold_19232 (6894-7056) | |
| 380-508, gnl|mm7|chr2 (164240381-164240590) | |
| 380-508, gnl|Mm7|chr2 (164240449-164240577) | |
| 380-508, gnl|monDom2|scaffold_1 (156236177-156236007) | |
| 380-508, gnl|oryCun1|scaffold_203232 (2504-2341) | |
| 380-508, gnl|panTro1|chr21 (45966276-45966440) | |
| 380-508, gnl|rheMac2|chr10 (19030994-19030830) | |
| 380-508, gnl|rn3|chr3 (155427273-155427437) | |
| 380-508, gnl|tetNig1|chr9 (1961737-1961581) | |
| 380-508, gnl|xenTro1|scaffold_35 (2056710-2056556) | |
| 782-882, gnl|bosTau2|chr13 (55409714-55409614) | |
| 782-882, gnl|canFam2|chr24 (35687630-35687747) | |
| 782-882, gnl|danRer3|chr23 (12210936-12210804) | |
| 782-882, gnl|dasNov1|scaffold_22995 (7820-7939) | |
| 782-882, gnl|echTel1|scaffold_183967 (3706-3823) | |
| 782-882, gnl|galGal2|chr20 (4835702-4835575) | |
| 782-882, gnl|hg17|chr20 (43482379-43482496) | |
| 782-882, gnl|Hg17|chr20 (43482384-43482484) | |
| 782-882, gnl|loxAfr1|scaffold_19232 (8390-8508) | |
| 782-882, gnl|mm7|chr2 (164241921-164242038) | |
| 782-882, gnl|Mm7|chr2 (164241926-164242026) | |
| 782-882, gnl|monDom2|scaffold_1 (156233693-156233579) | |
| 782-882, gnl|oryCun1|scaffold_203232 (957-841) | |
| 782-882, gnl|panTro1|chr21 (45967773-45967890) | |
| 782-882, gnl|rheMac2|chr10 (19029493-19029376) | |
| 782-882, gnl|rn3|chr3 (155428786-155428903) | |
| 782-882, gnl|tetNig1|chr9 (1960908-1960801) | |
| 782-882, gnl|xenTro1|scaffold_35 (2055167-2055044) | |
| 1047-1272, gnl|bosTau2|chr13 (55408673-55408446) | |
| 1047-1272, gnl|Hg17|chr20 (43483436-43483664) | |
| 1047-1272, gnl|Mm7|chr2 (164243131-164243359) | |
| 1499-1752, gnl|bosTau2|chr13 (55403547-55403294) | |
| 1499-1752, gnl|Hg17|chr20 (43487628-43487881) | |
| 1499-1752, gnl|Mm7|chr2 (164247929-164248182) | |
| 1787-2140, gnl|bosTau2|chr13 (55403210-55402856) | |
| 1787-2140, gnl|Hg17|chr20 (43487941-43488295) | |
| 1787-2140, gnl|Mm7|chr2 (164248626-164248955) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| mas (0.42061) | |
| elu (0.385356) | |
| cov (0.264306) | |
| fcc (0.197785) | |
| cmu (0.186393) | |
| nep (0.183925) | |
| sto (0.179824) | |
| fhi (0.169578) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| che (0.136314) | |
| ese (0.126502) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| cty (0.10408) | |
| eje (0.0988338) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mas (0.42061) | |
| elu (0.385356) | |
| cov (0.264306) | |
| fcc (0.197785) | |
| cmu (0.186393) | |
| nep (0.183925) | |
| sto (0.179824) | |
| fhi (0.169578) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| che (0.136314) | |
| ese (0.126502) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| cty (0.10408) | |
| eje (0.0988338) |