Non-Coding RNA Search

Ss1.1-Pig4-TMW8045K14.3

Sequence:


               
               TCTAGCATAGAATCTCCCCTTAGAACCCCCAGTAGACTGAGCGATGGGGTAGTGCCTTCC
CAGGGAGACGTAGAGCATTCAGCAGATGGACCTCCGGTCGTAACTGCAGAAGACACATCC
TTAGAAGACAGCAAACTTGAAGACTCAATGCCTTTAACAGAAATACCTGAAGCTGTGGCT
GTAGATGAGAGCCAGTCGGAGAATGTCTATCTGAGTTGGCAGAACGAGACGTCAAGTTGA
AACCTAGAGCCCCCTGCTCAAGCTCGGAGAATAACCGGTGGGTTACTTGATCGACTGGAT
GACAGCCCTGACCAGTGTAGAGATTCCATTACCTCGTATCTCAAAGGGGAACCTGGGAAA
TTTGAAGCCAATGGAAGCCATGCAGAAGTCACTCCAGAAGCAAAGACGAAATCTTACTTT
CCAGAATCCCAAAATGATGTCGGGAAACAGAGTGCAAAGGAAACTCTGAAACCAAAAATA
CCCAGGACCTGGTCGTGTTGATGAACCATCATCATCGCTAGCAGCTTATCAGAAAGCTCT
GGAAGAAACCAGCAAGTTTGTAATAGAAGAGCCTAAACCCTGTATGCCTGTCAGTATGAA
AAAGATGAGTAGGACTTCTCCTACAGATGGCAAGCCAAGGCTTAACCTCCATGAGGAAGA
GGGGTCGAATGGGTCTGAGCAAAAGCAGGGAGAAGGTTACAAGGTGAAGACAAAGAAAGA
AATCCGACACGTGGAAAAGAAGAGCCACTCCTAACAGTAAACGGTCAATCACAGTGGATC
ATGTGTTATTACTGCCAGTATTGAGAAATTCATGGAAGATAAGTCAGCAGGAAGTAAAAA
TTTACAGAGGAGGGTGTGTGTGTTTGCTGCTTCCACACATTAATGGCATGATTTTTTTTT
TATGCAAAAAGAAAACAGAAAACGAAAACCGCCCACATTTTAATTTAGCATGAGCCAATT
TACAGAGCATGGAAATTCACTTTCATTCCCAGGACTGGCACGTGTGCAATTAGCAATGCA
GTGTATATACAAGAAGCCATGCTGTTAACAGTTTCTCTCAAGTAATTTGGTGTCATTTAC
AAAAAGGAAGAAATTCCTGCCGCCAGAAGGGACAGAAGGACATGGAATGAACACATCATG
GAGAAACACTAAAATTACTAAATCCACAACAGCTCGCCTTATTTTTCTTGGACCCAAACT
GTCAGGGTATAAACACTATTTGTTTCTTTTTTAAAAACATCTATAGTTTTGCTGTAAATA
ATAACACTGTATAAATTCTAACAGAAAAAAAATAGAATAAATGTCCATAAGGCACTGCCT
CTTAGAACACAAACAGAATATTGCAAATGCATTTAACATAATAGGGGTCTCAAGTGACTT
CGCCCTAGGAGAGGAAGGAGGGGCTATGGGGGGAGGGGGTCTTCACTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTAGCATAGAATCTCCCCTTAGAACCCCCAGTAGACTGAGCGATGGGGTAGTGCCTTCC
CAGGGAGACGTAGAGCATTCAGCAGATGGACCTCCGGTCGTAACTGCAGAAGACACATCC
TTAGAAGACAGCAAACTTGAAGACTCAATGCCTTTAACAGAAATACCTGAAGCTGTGGCT
GTAGATGAGAGCCAGTCGGAGAATGTCTATCTGAGTTGGCAGAACGAGACGTCAAGTTGA
AACCTAGAGCCCCCTGCTCAAGCTCGGAGAATAACCGGTGGGTTACTTGATCGACTGGAT
GACAGCCCTGACCAGTGTAGAGATTCCATTACCTCGTATCTCAAAGGGGAACCTGGGAAA
TTTGAAGCCAATGGAAGCCATGCAGAAGTCACTCCAGAAGCAAAGACGAAATCTTACTTT
CCAGAATCCCAAAATGATGTCGGGAAACAGAGTGCAAAGGAAACTCTGAAACCAAAAATA
CCCAGGACCTGGTCGTGTTGATGAACCATCATCATCGCTAGCAGCTTATCAGAAAGCTCT
GGAAGAAACCAGCAAGTTTGTAATAGAAGAGCCTAAACCCTGTATGCCTGTCAGTATGAA
AAAGATGAGTAGGACTTCTCCTACAGATGGCAAGCCAAGGCTTAACCTCCATGAGGAAGA
GGGGTCGAATGGGTCTGAGCAAAAGCAGGGAGAAGGTTACAAGGTGAAGACAAAGAAAGA
AATCCGACACGTGGAAAAGAAGAGCCACTCCTAACAGTAAACGGTCAATCACAGTGGATC
ATGTGTTATTACTGCCAGTATTGAGAAATTCATGGAAGATAAGTCAGCAGGAAGTAAAAA
TTTACAGAGGAGGGTGTGTGTGTTTGCTGCTTCCACACATTAATGGCATGATTTTTTTTT
TATGCAAAAAGAAAACAGAAAACGAAAACCGCCCACATTTTAATTTAGCATGAGCCAATT
TACAGAGCATGGAAATTCACTTTCATTCCCAGGACTGGCACGTGTGCAATTAGCAATGCA
GTGTATATACAAGAAGCCATGCTGTTAACAGTTTCTCTCAAGTAATTTGGTGTCATTTAC
AAAAAGGAAGAAATTCCTGCCGCCAGAAGGGACAGAAGGACATGGAATGAACACATCATG
GAGAAACACTAAAATTACTAAATCCACAACAGCTCGCCTTATTTTTCTTGGACCCAAACT
GTCAGGGTATAAACACTATTTGTTTCTTTTTTAAAAACATCTATAGTTTTGCTGTAAATA
ATAACACTGTATAAATTCTAACAGAAAAAAAATAGAATAAATGTCCATAAGGCACTGCCT
CTTAGAACACAAACAGAATATTGCAAATGCATTTAACATAATAGGGGTCTCAAGTGACTT
CGCCCTAGGAGAGGAAGGAGGGGCTATGGGGGGAGGGGGTCTTCACTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26329047|dbj|BAC28262.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26329047|dbj|BAC28262.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               76-190, + strand, RNAz p=0.938152
               

               
               539-655, - strand, RNAz p=0.55117

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               76-190, + strand, RNAz p=0.938152
               

               
               539-655, - strand, RNAz p=0.55117

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               1-216, gnl|bosTau2|chr28 (12026223-12026438)
               

               
               1-216, gnl|canFam2|chr4 (15396996-15397291)
               

               
               1-216, gnl|danRer3|chrUn (129859567-129859303)
               

               
               1-216, gnl|dasNov1|scaffold_49746 (1494-1199)
               

               
               1-216, gnl|echTel1|scaffold_311574 (37682-37977)
               

               
               1-216, gnl|galGal2|chr6 (8424653-8424361)
               

               
               1-216, gnl|hg17|chr10 (61489377-61489660)
               

               
               1-216, gnl|Hg17|chr10 (61489675-61489460)
               

               
               1-216, gnl|loxAfr1|scaffold_83386 (8199-8494)
               

               
               1-216, gnl|mm7|chr10 (69604544-69604246)
               

               
               1-216, gnl|Mm7|chr10 (69604229-69604444)
               

               
               1-216, gnl|monDom2|scaffold_67 (151594-151889)
               

               
               1-216, gnl|oryCun1|scaffold_204611 (27613-27908)
               

               
               1-216, gnl|panTro1|chr8 (62305824-62306107)
               

               
               1-216, gnl|rheMac2|chr9 (77227265-77226982)
               

               
               1-216, gnl|rn3|chr20 (19372995-19373293)
               

               
               1-216, gnl|xenTro1|scaffold_201 (951531-951829)
               


               
               303-685, gnl|bosTau2|chr28 (12029412-12029793)
               

               
               303-685, gnl|Hg17|chr10 (61485803-61485422)
               

               
               303-685, gnl|Mm7|chr10 (69606818-69607202)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-216, gnl|bosTau2|chr28 (12026223-12026438)
               

               
               1-216, gnl|canFam2|chr4 (15396996-15397291)
               

               
               1-216, gnl|danRer3|chrUn (129859567-129859303)
               

               
               1-216, gnl|dasNov1|scaffold_49746 (1494-1199)
               

               
               1-216, gnl|echTel1|scaffold_311574 (37682-37977)
               

               
               1-216, gnl|galGal2|chr6 (8424653-8424361)
               

               
               1-216, gnl|hg17|chr10 (61489377-61489660)
               

               
               1-216, gnl|Hg17|chr10 (61489675-61489460)
               

               
               1-216, gnl|loxAfr1|scaffold_83386 (8199-8494)
               

               
               1-216, gnl|mm7|chr10 (69604544-69604246)
               

               
               1-216, gnl|Mm7|chr10 (69604229-69604444)
               

               
               1-216, gnl|monDom2|scaffold_67 (151594-151889)
               

               
               1-216, gnl|oryCun1|scaffold_204611 (27613-27908)
               

               
               1-216, gnl|panTro1|chr8 (62305824-62306107)
               

               
               1-216, gnl|rheMac2|chr9 (77227265-77226982)
               

               
               1-216, gnl|rn3|chr20 (19372995-19373293)
               

               
               1-216, gnl|xenTro1|scaffold_201 (951531-951829)
               


               
               303-685, gnl|bosTau2|chr28 (12029412-12029793)
               

               
               303-685, gnl|Hg17|chr10 (61485803-61485422)
               

               
               303-685, gnl|Mm7|chr10 (69606818-69607202)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               sin (0.174948)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               pgl (0.118483)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.174948)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               pgl (0.118483)

	76-190, + strand, RNAz p=0.938152
	539-655, - strand, RNAz p=0.55117

	1-216, gnl\|bosTau2\|chr28 (12026223-12026438)
	1-216, gnl\|canFam2\|chr4 (15396996-15397291)
	1-216, gnl\|danRer3\|chrUn (129859567-129859303)
	1-216, gnl\|dasNov1\|scaffold_49746 (1494-1199)
	1-216, gnl\|echTel1\|scaffold_311574 (37682-37977)
	1-216, gnl\|galGal2\|chr6 (8424653-8424361)
	1-216, gnl\|hg17\|chr10 (61489377-61489660)
	1-216, gnl\|Hg17\|chr10 (61489675-61489460)
	1-216, gnl\|loxAfr1\|scaffold_83386 (8199-8494)
	1-216, gnl\|mm7\|chr10 (69604544-69604246)
	1-216, gnl\|Mm7\|chr10 (69604229-69604444)
	1-216, gnl\|monDom2\|scaffold_67 (151594-151889)
	1-216, gnl\|oryCun1\|scaffold_204611 (27613-27908)
	1-216, gnl\|panTro1\|chr8 (62305824-62306107)
	1-216, gnl\|rheMac2\|chr9 (77227265-77226982)
	1-216, gnl\|rn3\|chr20 (19372995-19373293)
	1-216, gnl\|xenTro1\|scaffold_201 (951531-951829)

	303-685, gnl\|bosTau2\|chr28 (12029412-12029793)
	303-685, gnl\|Hg17\|chr10 (61485803-61485422)
	303-685, gnl\|Mm7\|chr10 (69606818-69607202)