Non-Coding RNA Search

Ss1.1-Pig4-TMW8045L19.3

Sequence:


               
               AACAATGGGAGTGAGTTTCTGCTGGTGATCAGGAGATGCTGTAGAATGAAAAGGAATACA
GCATTTTCGTTCATAGATGTGGGCCGTGGTAAGCACTGTACCCACACTTATATTCCAAAG
AATTAGTTTGTGTTTGTGCTTCATCTGCTAATCCAGGCACCCTCAGACTGCTGAAATGTT
TAGTTATCTAAAATAGCCCTTAGGTTCAGGTGACCAGAAAGAAATGAACCAAGGTTTGAT
TGATTGCCATACATGTCCCCTCATGCATTTCAGAGCGGATGCTTGTCTTAGAAAATAACT
GTATGAATGAAATTACTTCATTGATTCTCATTAAAGAAATAACGAGGAGTTCCCGTCATG
GCACGGTAGAAACGAATCCGACTAGGAACCATGAGGTTGTGCGTTTGATCCCTGGCCTCG
CTCAGTGGGTTAAGGATCTGGCGTTGCCGTGAGCTGTGGTGTAGATCAAGGACTCAGCTC
AGATCTGTCATTGCTGTGGCTCAGGCATAGGCCGGTGGCAACAGCTCCAATTAGATCCCT
AGCCTGAGAACCTCCATGTGCTTCGTGTGTGGCCCCAAAAGCTCAAAAGAAATAACGAGT
ACCATGCTTTCATGGTTGGTATAGCCTATATTGCTTTACTTTTTTAATTTGACAGTATCT
GCCCCTAAGCTTAAATACTACAAGATCAAAGGAAAACGGTCACCTTTAAGCCATTATTGT
ATTATTGAAGTATTTCTGGCTATTATCATGGTGAAATTTTAAGTTTGTGCTATTGAAATT
ATATAATGATCTCACAGTAATGGAGTGGAGTCCTAATTAATTGGTACAGTTTTACAAACC
GAAGCATCCACCATGGTATACCTTAGAGAGTTAAAGACAGTCTGTTTATCTAATAAGTCT
AAACCAAAGGGCTTTTCCTTTGTTTTTGCTTCTGATTCTTTCTGACGCTTCAGATTGTTT
CTCTTTTCACTGGTAATGCAATGAATGGGAAATTTTTATTCCATTGAAGTGACTTGAAGT
GACCTCTTGTGCTTTAGGTGCAAGTTGATGCTGGGGAAAAAAAAAAGACTAAATAGGATA
GAACAAAACACAGTTTGCCACACCAATGTCTGCAGTAAAGGCTCTCAGACCCCAGGAATT
TAGTCGGTTTCCTCTGGTCAACTGCTAAACCTCTGCGCCTTACCGGTCCTTTGTAGACTT
GCCTTAATGACTCATACGGAAGGCTGGGAGCAGGGGAAGCCGCTGTGTCCTGGCATACCG
TAATGAAGATGGCTTTTTAGGCACAGTGCACAGCAAGCATTTGTTCTGTGCTGTTAGAGC
CAGACTCTGTATTATGAACAGTTTTCATAATTGTCCACTTTATGTCATCTTCCTGAGATT
GAAACATCTTTTCTAGATAATTAGTTTGAACCACTCTAGGTTGTGAAGTGTATTGGTTTC
CTCCCATCATTACTGTAAAAAGAAGTTGTGAATCTTCTTGTTAATGAACTATGGATTTCT
CCACCAGTTTCTTTTTTTAAAAAATGCTTGAAGATTGTCTTTCAGTGTAAGATCTACCTT
TTCATAAAGGGAGAGATAGTTTGTAATGTTAAAAAATAAAGTCCTCATTCATTAAAAATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACAATGGGAGTGAGTTTCTGCTGGTGATCAGGAGATGCTGTAGAATGAAAAGGAATACA
GCATTTTCGTTCATAGATGTGGGCCGTGGTAAGCACTGTACCCACACTTATATTCCAAAG
AATTAGTTTGTGTTTGTGCTTCATCTGCTAATCCAGGCACCCTCAGACTGCTGAAATGTT
TAGTTATCTAAAATAGCCCTTAGGTTCAGGTGACCAGAAAGAAATGAACCAAGGTTTGAT
TGATTGCCATACATGTCCCCTCATGCATTTCAGAGCGGATGCTTGTCTTAGAAAATAACT
GTATGAATGAAATTACTTCATTGATTCTCATTAAAGAAATAACGAGGAGTTCCCGTCATG
GCACGGTAGAAACGAATCCGACTAGGAACCATGAGGTTGTGCGTTTGATCCCTGGCCTCG
CTCAGTGGGTTAAGGATCTGGCGTTGCCGTGAGCTGTGGTGTAGATCAAGGACTCAGCTC
AGATCTGTCATTGCTGTGGCTCAGGCATAGGCCGGTGGCAACAGCTCCAATTAGATCCCT
AGCCTGAGAACCTCCATGTGCTTCGTGTGTGGCCCCAAAAGCTCAAAAGAAATAACGAGT
ACCATGCTTTCATGGTTGGTATAGCCTATATTGCTTTACTTTTTTAATTTGACAGTATCT
GCCCCTAAGCTTAAATACTACAAGATCAAAGGAAAACGGTCACCTTTAAGCCATTATTGT
ATTATTGAAGTATTTCTGGCTATTATCATGGTGAAATTTTAAGTTTGTGCTATTGAAATT
ATATAATGATCTCACAGTAATGGAGTGGAGTCCTAATTAATTGGTACAGTTTTACAAACC
GAAGCATCCACCATGGTATACCTTAGAGAGTTAAAGACAGTCTGTTTATCTAATAAGTCT
AAACCAAAGGGCTTTTCCTTTGTTTTTGCTTCTGATTCTTTCTGACGCTTCAGATTGTTT
CTCTTTTCACTGGTAATGCAATGAATGGGAAATTTTTATTCCATTGAAGTGACTTGAAGT
GACCTCTTGTGCTTTAGGTGCAAGTTGATGCTGGGGAAAAAAAAAAGACTAAATAGGATA
GAACAAAACACAGTTTGCCACACCAATGTCTGCAGTAAAGGCTCTCAGACCCCAGGAATT
TAGTCGGTTTCCTCTGGTCAACTGCTAAACCTCTGCGCCTTACCGGTCCTTTGTAGACTT
GCCTTAATGACTCATACGGAAGGCTGGGAGCAGGGGAAGCCGCTGTGTCCTGGCATACCG
TAATGAAGATGGCTTTTTAGGCACAGTGCACAGCAAGCATTTGTTCTGTGCTGTTAGAGC
CAGACTCTGTATTATGAACAGTTTTCATAATTGTCCACTTTATGTCATCTTCCTGAGATT
GAAACATCTTTTCTAGATAATTAGTTTGAACCACTCTAGGTTGTGAAGTGTATTGGTTTC
CTCCCATCATTACTGTAAAAAGAAGTTGTGAATCTTCTTGTTAATGAACTATGGATTTCT
CCACCAGTTTCTTTTTTTAAAAAATGCTTGAAGATTGTCTTTCAGTGTAAGATCTACCTT
TTCATAAAGGGAGAGATAGTTTGTAATGTTAAAAAATAAAGTCCTCATTCATTAAAAATG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1-156, + strand, RNAz p=0.672553

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-156, + strand, RNAz p=0.672553

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-346, gnl|bosTau2|chr16 (31750129-31750448)
               

               
               1-346, gnl|Hg17|chr1 (10301236-10301584)
               

               
               1-346, gnl|Mm7|chr4 (148224650-148224342)
               


               
               586-1618, gnl|bosTau2|chr16 (31750435-31751431)
               

               
               586-1618, gnl|Hg17|chr1 (10301571-10302904)
               

               
               586-1618, gnl|Mm7|chr4 (148224358-148223273)
               


               
               1272-1614, gnl|bosTau2|chr10 (22375579-22375924)
               

               
               1272-1614, gnl|Hg17|chr1 (10302551-10302900)
               

               
               1272-1614, gnl|Mm7|chr4 (148223590-148223277)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-346, gnl|bosTau2|chr16 (31750129-31750448)
               

               
               1-346, gnl|Hg17|chr1 (10301236-10301584)
               

               
               1-346, gnl|Mm7|chr4 (148224650-148224342)
               


               
               586-1618, gnl|bosTau2|chr16 (31750435-31751431)
               

               
               586-1618, gnl|Hg17|chr1 (10301571-10302904)
               

               
               586-1618, gnl|Mm7|chr4 (148224358-148223273)
               


               
               1272-1614, gnl|bosTau2|chr10 (22375579-22375924)
               

               
               1272-1614, gnl|Hg17|chr1 (10302551-10302900)
               

               
               1272-1614, gnl|Mm7|chr4 (148223590-148223277)

Expressed library(ies): 21 entry(ies)

More info

Expressed library(ies): 21 entry(ies)

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               tbr (0.616713)
               

               
               isp (0.451128)
               

               
               ste (0.405625)
               

               
               elu (0.385356)
               

               
               vin (0.332557)
               

               
               sme (0.305437)
               

               
               ssp (0.271039)
               

               
               mgp (0.230681)
               

               
               nms (0.213858)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               nlu (0.191681)
               

               
               gul (0.177588)
               

               
               cut (0.169924)
               

               
               bfe (0.149858)
               

               
               hlv (0.139256)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               eru (0.120048)

Expressed library(ies): 21 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.616713)
               

               
               isp (0.451128)
               

               
               ste (0.405625)
               

               
               elu (0.385356)
               

               
               vin (0.332557)
               

               
               sme (0.305437)
               

               
               ssp (0.271039)
               

               
               mgp (0.230681)
               

               
               nms (0.213858)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               nlu (0.191681)
               

               
               gul (0.177588)
               

               
               cut (0.169924)
               

               
               bfe (0.149858)
               

               
               hlv (0.139256)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               eru (0.120048)

	1-346, gnl\|bosTau2\|chr16 (31750129-31750448)
	1-346, gnl\|Hg17\|chr1 (10301236-10301584)
	1-346, gnl\|Mm7\|chr4 (148224650-148224342)

	586-1618, gnl\|bosTau2\|chr16 (31750435-31751431)
	586-1618, gnl\|Hg17\|chr1 (10301571-10302904)
	586-1618, gnl\|Mm7\|chr4 (148224358-148223273)

	1272-1614, gnl\|bosTau2\|chr10 (22375579-22375924)
	1272-1614, gnl\|Hg17\|chr1 (10302551-10302900)
	1272-1614, gnl\|Mm7\|chr4 (148223590-148223277)

	tbr (0.616713)
	isp (0.451128)
	ste (0.405625)
	elu (0.385356)
	vin (0.332557)
	sme (0.305437)
	ssp (0.271039)
	mgp (0.230681)
	nms (0.213858)
	hea (0.204499)
	aor (0.195274)
	nlu (0.191681)
	gul (0.177588)
	cut (0.169924)
	bfe (0.149858)
	hlv (0.139256)
	ova (0.129132)
	sug (0.127291)
	ese (0.126502)
	bla (0.124347)
	eru (0.120048)