Non-Coding RNA Search

Ss1.1-Pig4-TMW8045L23.3

Sequence:


               
               CATCCATGACCTGCAGTCTCAAGTACAGAAGGGGAACCCCAGAGCTAGGAAATGTAGGTG
TATATTTTAATGAACTGCTACCCCTGCTAAAGAGGCTTCTCTCACTTTTGTGTTCTACAG
AAAGACCAAGGGCAGGTAGGAGGGACAAAGCTTTGAATAACTGCTTGCTGATACCACCGC
ATGTGGCAAACAGGACCGAGACCATTACACATCCGAGGCAGGTGTGAGGTATGGTGGCTG
AGAATTGCCAGCTCCCCCACCCCCACAAAATGCCCTTTTTTTGCCTCCAAAGTCCAATCA
AGTGAGCCTGGGAAAGAACTAGGCCCGGCTTGAGGAGGTTGGTTCTGAAAGAAAAAGCTA
CCAAGACATTAAAGCAGGGTGAAGGGTAGGCAGGATGAAAGTAACCTAAGTAACCTGACT
CGGAGCTCTCAAAAGCTTCTTGCAGCTTGGTGACAATGACAGGATTTATTTCAGCCAGGA
TAATGTCTGTGGTCCATCATCTGAAGACAATATTCCTTCATGTTGTTACAAACCGTATAT
ATAGTATGTATGTGTTGTTGGTGTGTATATAAATAATATATATTATATATATATGAGAGA
TTTAGTGACTTTTGATACGGGTTTGGTGCAGGTGAATTTATTACTGAGCCAAATGAGGCA
CATACCGAGTCAGTAGTTCAAGTCCAGGGCATTCAACGCTTTTTCTGGTTTCCATACATG
TATAGTGCCTATTTCACACAGTATTGTCAGTGTTGTGTCGAATCCAGAACTCACAAATCC
GAGCCAGCGATGTTTTATTTGTAGACAATCAACTTGAATCTATAAATTATTACTGGCAGA
TGATTATAATGCTGAGTCCCTAACACTAACACAAAGGAAACCCAGAGCATCTTGCTAAGA
AGTTTTCTATTTTTGTTTTGTTCCTGGAAGTCAATAGAACAGCAGTTGTGTGTGGTTATG
TTAGTCTCAAGATACTTAATTTGCTGACCTTATTTCAGAAAAAAAAAAAATTTGTATGTA
TTATATTTGTGGGATGGTAAAATAATGGTTTGAGATTTTTATCAAATATGGAGAGTAGTT
ATTTATGAAAAAACAAAGAAATGTCTATTTTTGTTTCTTTGTTCCCAATTAATGTAGATA
AATTTTAAAGTGCATTAAAACAATGGTAAAGTAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATCCATGACCTGCAGTCTCAAGTACAGAAGGGGAACCCCAGAGCTAGGAAATGTAGGTG
TATATTTTAATGAACTGCTACCCCTGCTAAAGAGGCTTCTCTCACTTTTGTGTTCTACAG
AAAGACCAAGGGCAGGTAGGAGGGACAAAGCTTTGAATAACTGCTTGCTGATACCACCGC
ATGTGGCAAACAGGACCGAGACCATTACACATCCGAGGCAGGTGTGAGGTATGGTGGCTG
AGAATTGCCAGCTCCCCCACCCCCACAAAATGCCCTTTTTTTGCCTCCAAAGTCCAATCA
AGTGAGCCTGGGAAAGAACTAGGCCCGGCTTGAGGAGGTTGGTTCTGAAAGAAAAAGCTA
CCAAGACATTAAAGCAGGGTGAAGGGTAGGCAGGATGAAAGTAACCTAAGTAACCTGACT
CGGAGCTCTCAAAAGCTTCTTGCAGCTTGGTGACAATGACAGGATTTATTTCAGCCAGGA
TAATGTCTGTGGTCCATCATCTGAAGACAATATTCCTTCATGTTGTTACAAACCGTATAT
ATAGTATGTATGTGTTGTTGGTGTGTATATAAATAATATATATTATATATATATGAGAGA
TTTAGTGACTTTTGATACGGGTTTGGTGCAGGTGAATTTATTACTGAGCCAAATGAGGCA
CATACCGAGTCAGTAGTTCAAGTCCAGGGCATTCAACGCTTTTTCTGGTTTCCATACATG
TATAGTGCCTATTTCACACAGTATTGTCAGTGTTGTGTCGAATCCAGAACTCACAAATCC
GAGCCAGCGATGTTTTATTTGTAGACAATCAACTTGAATCTATAAATTATTACTGGCAGA
TGATTATAATGCTGAGTCCCTAACACTAACACAAAGGAAACCCAGAGCATCTTGCTAAGA
AGTTTTCTATTTTTGTTTTGTTCCTGGAAGTCAATAGAACAGCAGTTGTGTGTGGTTATG
TTAGTCTCAAGATACTTAATTTGCTGACCTTATTTCAGAAAAAAAAAAAATTTGTATGTA
TTATATTTGTGGGATGGTAAAATAATGGTTTGAGATTTTTATCAAATATGGAGAGTAGTT
ATTTATGAAAAAACAAAGAAATGTCTATTTTTGTTTCTTTGTTCCCAATTAATGTAGATA
AATTTTAAAGTGCATTAAAACAATGGTAAAGTAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-1181, gnl|bosTau2|chr2 (62150259-62151413)
               

               
               1-1181, gnl|Hg17|chr2 (208453973-208452828)
               

               
               1-1181, gnl|Mm7|chr1 (64973442-64972285)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1181, gnl|bosTau2|chr2 (62150259-62151413)
               

               
               1-1181, gnl|Hg17|chr2 (208453973-208452828)
               

               
               1-1181, gnl|Mm7|chr1 (64973442-64972285)

Expressed library(ies): 13 entry(ies)

More info

Expressed library(ies): 13 entry(ies)

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               lin (1.01922)
               

               
               sin (0.524843)
               

               
               ret (0.3862)
               

               
               rec (0.346141)
               

               
               sug (0.254582)
               

               
               pgl (0.236967)
               

               
               eli (0.151814)
               

               
               liv (0.146284)
               

               
               che (0.136314)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               jej (0.0989218)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (1.01922)
               

               
               sin (0.524843)
               

               
               ret (0.3862)
               

               
               rec (0.346141)
               

               
               sug (0.254582)
               

               
               pgl (0.236967)
               

               
               eli (0.151814)
               

               
               liv (0.146284)
               

               
               che (0.136314)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               jej (0.0989218)

	1-1181, gnl\|bosTau2\|chr2 (62150259-62151413)
	1-1181, gnl\|Hg17\|chr2 (208453973-208452828)
	1-1181, gnl\|Mm7\|chr1 (64973442-64972285)

	lin (1.01922)
	sin (0.524843)
	ret (0.3862)
	rec (0.346141)
	sug (0.254582)
	pgl (0.236967)
	eli (0.151814)
	liv (0.146284)
	che (0.136314)
	lyg (0.133103)
	kid (0.129735)
	ova (0.129132)
	jej (0.0989218)