Ss1.1-Pig4-TMW8045L24.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGACCATTAACCTCCAGAGCCTGATCAACAATGAAATCCCTGACTGCTACACCTTCAGCA TCCTGATCACATTTGACAATAAGGCACACAGTGGGCGTGTCCCCATCAGCCTGGAGACCC AGGCCCACATCCAGGAGTGTAAGCACCCCAGCGTCTTCGGCCATGGAGACAACAGCTTCC GGCTCCTGTTTGATGTCGTCGTTATCCTCACCTGCTCCTTCTCCTTCCTGCTGTGTGCCC GCTCGCTGCTCCGAGGCTTCCTGCTGCAGAACGAGTTTGTCAGGTTCATCAGGCGGAAGC GGGGTCGGGTCGTCAGCCTGTGGGAGCGGCTGGAATTTGTCAACGGCTGGTACATCTTGC TGGTCACTAGTGATGTGCTCACCATCTCAGGCACCATCATGAAGATTGGCATCGAAGCTA AGAACCTGGCAAGTTACGATGTCTGCAGCATCCTCCTGGGCACCTCGACACTGCTCGTCT GGGTCGGCGTCATCCGCTACCTGACCTTCTTCCATAAGTACAATATCCTCATCGCCACAC TGCGAGTGGCCCTGCCCAGCGTCATGCGCTTCTGCTGCTGTGTGGCTGTCATCTACCTGG GCTATTGCTTCTGTGGCTGGATCGTGTTGGGGCCCTACCATGTGAAGTTCCGCTCGCTGT CCATGGTGTCCGAGTGCCTGTTTTCACTCATCAACGGGGACGACATGTTCGTGACATTTG CAGCGATGCAGGCCCAGCAGGGTCGCAGCAGCCTGGTCTGGCTCTTCTCCCAGCTCTACC TGTACTCCTTCATCAGCCTCTTCATCTACATGGTGCTTAGCCTCTTCATCGCGCTCATCA CTGGGGCCTACGACACCATCAAGCACCCGGGCGGAACAGGCGCGGAGGAGAGTGAACTCC AGGCCTACATTGCACAGTGCCAGGACAGCCCCACCTCCGGCAAATTCCGTCGCGGGAGCG GCTCTGCCTGCAGCCTCCTCTGCTGCTGCGGCCGAGATGCTTCGGAGGAGCATTCGCTGC TGGTGAATTGACTGGGACCAGACTGCAGCTGGACATTAGCCCCCGGACTGCGGAGACCCA TGCTTATTTATTTTTAGCCTTTGCTTTTAAGGATCGGCCCCCGGCTGTGCCCTGTGAGGG CCTGGGACAGTCGGGTCGGACATTAGAGTGGGACTGGGGTAGGGTGAGTGTTAAATAAAC GGGAAAATAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGACCATTAACCTCCAGAGCCTGATCAACAATGAAATCCCTGACTGCTACACCTTCAGCA TCCTGATCACATTTGACAATAAGGCACACAGTGGGCGTGTCCCCATCAGCCTGGAGACCC AGGCCCACATCCAGGAGTGTAAGCACCCCAGCGTCTTCGGCCATGGAGACAACAGCTTCC GGCTCCTGTTTGATGTCGTCGTTATCCTCACCTGCTCCTTCTCCTTCCTGCTGTGTGCCC GCTCGCTGCTCCGAGGCTTCCTGCTGCAGAACGAGTTTGTCAGGTTCATCAGGCGGAAGC GGGGTCGGGTCGTCAGCCTGTGGGAGCGGCTGGAATTTGTCAACGGCTGGTACATCTTGC TGGTCACTAGTGATGTGCTCACCATCTCAGGCACCATCATGAAGATTGGCATCGAAGCTA AGAACCTGGCAAGTTACGATGTCTGCAGCATCCTCCTGGGCACCTCGACACTGCTCGTCT GGGTCGGCGTCATCCGCTACCTGACCTTCTTCCATAAGTACAATATCCTCATCGCCACAC TGCGAGTGGCCCTGCCCAGCGTCATGCGCTTCTGCTGCTGTGTGGCTGTCATCTACCTGG GCTATTGCTTCTGTGGCTGGATCGTGTTGGGGCCCTACCATGTGAAGTTCCGCTCGCTGT CCATGGTGTCCGAGTGCCTGTTTTCACTCATCAACGGGGACGACATGTTCGTGACATTTG CAGCGATGCAGGCCCAGCAGGGTCGCAGCAGCCTGGTCTGGCTCTTCTCCCAGCTCTACC TGTACTCCTTCATCAGCCTCTTCATCTACATGGTGCTTAGCCTCTTCATCGCGCTCATCA CTGGGGCCTACGACACCATCAAGCACCCGGGCGGAACAGGCGCGGAGGAGAGTGAACTCC AGGCCTACATTGCACAGTGCCAGGACAGCCCCACCTCCGGCAAATTCCGTCGCGGGAGCG GCTCTGCCTGCAGCCTCCTCTGCTGCTGCGGCCGAGATGCTTCGGAGGAGCATTCGCTGC TGGTGAATTGACTGGGACCAGACTGCAGCTGGACATTAGCCCCCGGACTGCGGAGACCCA TGCTTATTTATTTTTAGCCTTTGCTTTTAAGGATCGGCCCCCGGCTGTGCCCTGTGAGGG CCTGGGACAGTCGGGTCGGACATTAGAGTGGGACTGGGGTAGGGTGAGTGTTAAATAAAC GGGAAAATAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 65-169, gnl|bosTau2|chr7 (12301357-12301461) | |
| 65-169, gnl|canFam2|chr20 (55325209-55325322) | |
| 65-169, gnl|danRer3|chr1 (45161746-45161857) | |
| 65-169, gnl|dasNov1|scaffold_19855 (9154-9266) | |
| 65-169, gnl|fr1|chrUn (232664809-232664698) | |
| 65-169, gnl|galGal2|chrUn (133371680-133371573) | |
| 65-169, gnl|hg17|chr19 (7499042-7499155) | |
| 65-169, gnl|Hg17|chr19 (7499043-7499147) | |
| 65-169, gnl|loxAfr1|scaffold_63946 (670-785) | |
| 65-169, gnl|mm7|chr8 (3423242-3423356) | |
| 65-169, gnl|Mm7|chr8 (3423243-3423347) | |
| 65-169, gnl|monDom2|scaffold_54 (625956-625843) | |
| 65-169, gnl|oryCun1|scaffold_211543 (27811-27699) | |
| 65-169, gnl|panTro1|chr20 (7848917-7849030) | |
| 65-169, gnl|rheMac2|chr19 (7480743-7480856) | |
| 65-169, gnl|rn3|chr12 (2646570-2646456) | |
| 65-169, gnl|tetNig1|chr18 (1302040-1302147) | |
| 65-169, gnl|xenTro1|scaffold_66 (1699461-1699355) | |
| 260-422, gnl|bosTau2|chr7 (12301838-12302000) | |
| 260-422, gnl|Hg17|chr19 (7499697-7499856) | |
| 260-422, gnl|Mm7|chr8 (3424635-3424797) | |
| 638-863, gnl|bosTau2|chr7 (12303075-12303300) | |
| 638-863, gnl|Hg17|chr19 (7501161-7501387) | |
| 638-863, gnl|Mm7|chr8 (3426752-3426973) | |
| 1060-1211, gnl|bosTau2|chr7 (12305194-12305338) | |
| 1060-1211, gnl|Hg17|chr19 (7504732-7504876) | |
| 1060-1211, gnl|Mm7|chr8 (3429192-3429340) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 65-169, gnl|bosTau2|chr7 (12301357-12301461) | |
| 65-169, gnl|canFam2|chr20 (55325209-55325322) | |
| 65-169, gnl|danRer3|chr1 (45161746-45161857) | |
| 65-169, gnl|dasNov1|scaffold_19855 (9154-9266) | |
| 65-169, gnl|fr1|chrUn (232664809-232664698) | |
| 65-169, gnl|galGal2|chrUn (133371680-133371573) | |
| 65-169, gnl|hg17|chr19 (7499042-7499155) | |
| 65-169, gnl|Hg17|chr19 (7499043-7499147) | |
| 65-169, gnl|loxAfr1|scaffold_63946 (670-785) | |
| 65-169, gnl|mm7|chr8 (3423242-3423356) | |
| 65-169, gnl|Mm7|chr8 (3423243-3423347) | |
| 65-169, gnl|monDom2|scaffold_54 (625956-625843) | |
| 65-169, gnl|oryCun1|scaffold_211543 (27811-27699) | |
| 65-169, gnl|panTro1|chr20 (7848917-7849030) | |
| 65-169, gnl|rheMac2|chr19 (7480743-7480856) | |
| 65-169, gnl|rn3|chr12 (2646570-2646456) | |
| 65-169, gnl|tetNig1|chr18 (1302040-1302147) | |
| 65-169, gnl|xenTro1|scaffold_66 (1699461-1699355) | |
| 260-422, gnl|bosTau2|chr7 (12301838-12302000) | |
| 260-422, gnl|Hg17|chr19 (7499697-7499856) | |
| 260-422, gnl|Mm7|chr8 (3424635-3424797) | |
| 638-863, gnl|bosTau2|chr7 (12303075-12303300) | |
| 638-863, gnl|Hg17|chr19 (7501161-7501387) | |
| 638-863, gnl|Mm7|chr8 (3426752-3426973) | |
| 1060-1211, gnl|bosTau2|chr7 (12305194-12305338) | |
| 1060-1211, gnl|Hg17|chr19 (7504732-7504876) | |
| 1060-1211, gnl|Mm7|chr8 (3429192-3429340) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| jej (0.197844) | |
| hyp (0.142837) | |
| cov (0.132153) | |
| pgl (0.118483) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| jej (0.197844) | |
| hyp (0.142837) | |
| cov (0.132153) | |
| pgl (0.118483) |