Non-Coding RNA Search

Ss1.1-Pig4-TMW8045M04.3

Sequence:


               
               CATGTATTTATGACTTTAATTTTCCACATTACTTTTAGGTAGTAAGAGCGGCAACTTAGA
ATTTTAGCGTGATGGCTTTGGAAATAACAAATATTAAAGTACTTTGTACTCAGTGACAGA
CTATTATCATGTTTGCCAGTTTTAAACAGCTTTTTATTTATGTTCATGTCCTGTAAATTT
TTAAGTACAGTAATTAAATAGTAGGACACATTGAAGCCTTTGTCTTGATTATATGTATAC
CAATGATCATAAAAATGTTATTTGTACAAACACTGCACAAACTATTTTAATAACATGATT
TGTTCTTTAAATTTAATGTGTTTTATTGAAATGTTCTTGAAGAGGATGACTATACCTGCC
TTTGGATCAGTTAAACATTGTATGCATTTCAGTTTTTCTTTGAAGAGTGCATGCTAATAG
ATTTGGTTTGAAAACTGTAAAATTTCAGGTTTTTGAAGATAGTACACTATCTTAGACTTA
AAAACAATTTTTATTCAGTTGGTTTGTTTTCACTTTGAATTTTAATATTTGGATGTATTC
ATGCATTGCCTTAAAGGTAATGCTAGATTAATTTTTATACACTTTAAATAACTACAGTTT
TATTTATAACTAAGTTTAGGTGGATGTGAGAGCATTTTTGTGGGTAAAAAATAAGTTAGC
ATAATGAATTTTGAGACATTCATTTGTGTATTTCCTTTGGGAAATCCCTCGTACCTACCA
TACATGATAGCTCCTTGCTTGGAAGATAACAAGAAAGATCTTTGAATATTCTGCTGCTGA
TACAATGCAAGCTTTAAACTCACATTTGTAACTAATTTGAAATTTAATTATCATGCTATA
TTAAAATTACTTTTTTCCATTAGATTATTCAAATTTCTTCCACTCGCTTGAGTTTATCAT
TTCTTTTTAAATTGCGCTGTCATTTCTGAGAATGAAATGGGCAATTACACTTAGAAAATG
AGTAATAGCATTTAATTTAAGTCAGTGGTTGTATGCTCAAATAAGTGTTACACATCAGCT
AGATACTGAACTTTATAGTCATTTTTGTTTTATTCATTCATGGTGTATCTCTGTGACCTC
ATTATAGCAAAATGAATAGCATTCCATACCCTACTTCTCTTTTCTTTTTGAAACTCATCT
TGAAAAGGTTAGTCTTTCAGTAACCTTTGTGGGTAAGTAGTTTCTAAATTTAGTTGTGTG
CTATCGTTTTGTTGAAGTCTGTCTGTTGTGTGTGCATGTGTCTGTGTGTGTTTATGTGTG
TGTGTAACCAGAAACTACATTCACACCTGTTTCATTTTGGGGATTTGTTTTTCTCCTTTG
TAATATAAAGAAATTCAAAGTTACCAAAATCCTTTAAGTGTATTAGTTTAGATTCTTTAT
GTGCCTTTCATGAAAGATATGTTTTCATTAATTTTATGGATGGAAGACCTGTTATATTCA
TATTATGAAGCTATGTATGAAATTCAACTCTCCTATTAGTAAATTTGAATCATGAGAAGT
AGTGGTTTAAAAAGCCACAAAGAAGCACACATTGGTGACATCATTGATGAATTCCTGAAA
TTTATTCTGTGTAATTGTGTTACTAATAAAACTTAATAAATTTGAATTTTTAAAATTTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATGTATTTATGACTTTAATTTTCCACATTACTTTTAGGTAGTAAGAGCGGCAACTTAGA
ATTTTAGCGTGATGGCTTTGGAAATAACAAATATTAAAGTACTTTGTACTCAGTGACAGA
CTATTATCATGTTTGCCAGTTTTAAACAGCTTTTTATTTATGTTCATGTCCTGTAAATTT
TTAAGTACAGTAATTAAATAGTAGGACACATTGAAGCCTTTGTCTTGATTATATGTATAC
CAATGATCATAAAAATGTTATTTGTACAAACACTGCACAAACTATTTTAATAACATGATT
TGTTCTTTAAATTTAATGTGTTTTATTGAAATGTTCTTGAAGAGGATGACTATACCTGCC
TTTGGATCAGTTAAACATTGTATGCATTTCAGTTTTTCTTTGAAGAGTGCATGCTAATAG
ATTTGGTTTGAAAACTGTAAAATTTCAGGTTTTTGAAGATAGTACACTATCTTAGACTTA
AAAACAATTTTTATTCAGTTGGTTTGTTTTCACTTTGAATTTTAATATTTGGATGTATTC
ATGCATTGCCTTAAAGGTAATGCTAGATTAATTTTTATACACTTTAAATAACTACAGTTT
TATTTATAACTAAGTTTAGGTGGATGTGAGAGCATTTTTGTGGGTAAAAAATAAGTTAGC
ATAATGAATTTTGAGACATTCATTTGTGTATTTCCTTTGGGAAATCCCTCGTACCTACCA
TACATGATAGCTCCTTGCTTGGAAGATAACAAGAAAGATCTTTGAATATTCTGCTGCTGA
TACAATGCAAGCTTTAAACTCACATTTGTAACTAATTTGAAATTTAATTATCATGCTATA
TTAAAATTACTTTTTTCCATTAGATTATTCAAATTTCTTCCACTCGCTTGAGTTTATCAT
TTCTTTTTAAATTGCGCTGTCATTTCTGAGAATGAAATGGGCAATTACACTTAGAAAATG
AGTAATAGCATTTAATTTAAGTCAGTGGTTGTATGCTCAAATAAGTGTTACACATCAGCT
AGATACTGAACTTTATAGTCATTTTTGTTTTATTCATTCATGGTGTATCTCTGTGACCTC
ATTATAGCAAAATGAATAGCATTCCATACCCTACTTCTCTTTTCTTTTTGAAACTCATCT
TGAAAAGGTTAGTCTTTCAGTAACCTTTGTGGGTAAGTAGTTTCTAAATTTAGTTGTGTG
CTATCGTTTTGTTGAAGTCTGTCTGTTGTGTGTGCATGTGTCTGTGTGTGTTTATGTGTG
TGTGTAACCAGAAACTACATTCACACCTGTTTCATTTTGGGGATTTGTTTTTCTCCTTTG
TAATATAAAGAAATTCAAAGTTACCAAAATCCTTTAAGTGTATTAGTTTAGATTCTTTAT
GTGCCTTTCATGAAAGATATGTTTTCATTAATTTTATGGATGGAAGACCTGTTATATTCA
TATTATGAAGCTATGTATGAAATTCAACTCTCCTATTAGTAAATTTGAATCATGAGAAGT
AGTGGTTTAAAAAGCCACAAAGAAGCACACATTGGTGACATCATTGATGAATTCCTGAAA
TTTATTCTGTGTAATTGTGTTACTAATAAAACTTAATAAATTTGAATTTTTAAAATTTTA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               196-312, - strand, RNAz p=0.938161
               

               
               893-1008, + strand, RNAz p=0.542223

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               196-312, - strand, RNAz p=0.938161
               

               
               893-1008, + strand, RNAz p=0.542223

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_002069, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_002069, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1620, gnl|bosTau2|chr24 (37084715-37083082)
               

               
               1-1620, gnl|Hg17|chr7 (79491744-79493371)
               

               
               1-1620, gnl|Mm7|chr5 (17280246-17278654)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1620, gnl|bosTau2|chr24 (37084715-37083082)
               

               
               1-1620, gnl|Hg17|chr7 (79491744-79493371)
               

               
               1-1620, gnl|Mm7|chr5 (17280246-17278654)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               fco (1.10046)
               

               
               rec (0.346141)
               

               
               fhi (0.339155)
               

               
               vin (0.332557)
               

               
               fat (0.294855)
               

               
               kid (0.259471)
               

               
               ret (0.257467)
               

               
               fcc (0.197785)
               

               
               hyp (0.142837)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               eje (0.0988338)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (1.10046)
               

               
               rec (0.346141)
               

               
               fhi (0.339155)
               

               
               vin (0.332557)
               

               
               fat (0.294855)
               

               
               kid (0.259471)
               

               
               ret (0.257467)
               

               
               fcc (0.197785)
               

               
               hyp (0.142837)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               eje (0.0988338)

	196-312, - strand, RNAz p=0.938161
	893-1008, + strand, RNAz p=0.542223

	1-1620, gnl\|bosTau2\|chr24 (37084715-37083082)
	1-1620, gnl\|Hg17\|chr7 (79491744-79493371)
	1-1620, gnl\|Mm7\|chr5 (17280246-17278654)

	fco (1.10046)
	rec (0.346141)
	fhi (0.339155)
	vin (0.332557)
	fat (0.294855)
	kid (0.259471)
	ret (0.257467)
	fcc (0.197785)
	hyp (0.142837)
	tra (0.123092)
	eru (0.120048)
	eje (0.0988338)