Non-Coding RNA Search

Ss1.1-Pig4-TMW8045M10.5

Sequence:


               
               CACCCGCCAGGCCAGTGACAGCGTCCTGCTGAAGACTTGTGGTTCCATTCAGACACCAGT
GTAATTGTTTTCCGTGTTGTAGTTTATTCTGTGATTTCTGGAATCTTCTTTTAGATTTCC
AAATTTAAATTTCAGTGGAAGACCTTCCACCGCAACCAGACAGTGTCTACAAACTACTGT
CGTAAACAATCCACTGTAAAAAGTCCAGGTGTATTAGTAACACTGAAACGCCTACGAGCA
CAACCCCCTGGGTTGCTTAGGTTGAACTTACTGTGTATATTAGACAGTTGTGTGCACCCC
TGACCTTGCGATTTGTACAGCCTGTGTTGGCCTAAGGGACTGGGCACCCCGTGGTCCTAC
TTCTTTTAATAACTCGAATATTTCTAGAGTACTTGAGCCACACGCGTTTCCGTATTTAAG
GAATTGCCGACTGACGTTCAGGTAACCAGAGCCATCTCAAAGAACCAAGAGGAGGCTTTC
GCATCACCTGCCCTCCTGAGCTGGTGAGCGGCACAGAGGGGGCAGCGGGAAGGTCTGTCG
TCGCGCCCCGACACGCCCGGGGCGCTCGCGGGCAGCCAGGGCTGCCAGGCTGGCCAGCAG
AGCCCCGCACTGGCTGGCCTCGGCGCCGTCTCTCAGCCCTGGTTGCCGTTGGACAGGCTC
GTAACTGGATGTCACACCTGCGCTCTCACTCTGTAATCAAGGTGACGATTGAAAAACTGG
AGGTTTTATTAGTAGTTTTTTATATAGAAAAATGTTATATTTGTTGAGTAGTTTCAGAAT
TTTCTAAAATGCCAACTACCGCAGGATTTCCAAGACTATTTCGGGCTAGTCTTTTAAGTG
TATGACAAAGTGTAAATAACGGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACCCGCCAGGCCAGTGACAGCGTCCTGCTGAAGACTTGTGGTTCCATTCAGACACCAGT
GTAATTGTTTTCCGTGTTGTAGTTTATTCTGTGATTTCTGGAATCTTCTTTTAGATTTCC
AAATTTAAATTTCAGTGGAAGACCTTCCACCGCAACCAGACAGTGTCTACAAACTACTGT
CGTAAACAATCCACTGTAAAAAGTCCAGGTGTATTAGTAACACTGAAACGCCTACGAGCA
CAACCCCCTGGGTTGCTTAGGTTGAACTTACTGTGTATATTAGACAGTTGTGTGCACCCC
TGACCTTGCGATTTGTACAGCCTGTGTTGGCCTAAGGGACTGGGCACCCCGTGGTCCTAC
TTCTTTTAATAACTCGAATATTTCTAGAGTACTTGAGCCACACGCGTTTCCGTATTTAAG
GAATTGCCGACTGACGTTCAGGTAACCAGAGCCATCTCAAAGAACCAAGAGGAGGCTTTC
GCATCACCTGCCCTCCTGAGCTGGTGAGCGGCACAGAGGGGGCAGCGGGAAGGTCTGTCG
TCGCGCCCCGACACGCCCGGGGCGCTCGCGGGCAGCCAGGGCTGCCAGGCTGGCCAGCAG
AGCCCCGCACTGGCTGGCCTCGGCGCCGTCTCTCAGCCCTGGTTGCCGTTGGACAGGCTC
GTAACTGGATGTCACACCTGCGCTCTCACTCTGTAATCAAGGTGACGATTGAAAAACTGG
AGGTTTTATTAGTAGTTTTTTATATAGAAAAATGTTATATTTGTTGAGTAGTTTCAGAAT
TTTCTAAAATGCCAACTACCGCAGGATTTCCAAGACTATTTCGGGCTAGTCTTTTAAGTG
TATGACAAAGTGTAAATAACGGAG

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-863, gnl|bosTau2|chr25 (14970839-14969968)
               

               
               1-863, gnl|Hg17|chr16 (14263315-14264155)
               

               
               1-863, gnl|Mm7|chr16 (12959932-12960666)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-863, gnl|bosTau2|chr25 (14970839-14969968)
               

               
               1-863, gnl|Hg17|chr16 (14263315-14264155)
               

               
               1-863, gnl|Mm7|chr16 (12959932-12960666)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               che (0.136314)
               

               
               med (0.116252)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.136314)
               

               
               med (0.116252)

	1-863, gnl\|bosTau2\|chr25 (14970839-14969968)
	1-863, gnl\|Hg17\|chr16 (14263315-14264155)
	1-863, gnl\|Mm7\|chr16 (12959932-12960666)