Non-Coding RNA Search

Ss1.1-Pig4-TMW8045M17.3

Sequence:


               
               GCGAACTTGGTATGTGACCTTGGGTAAATCACATGACCTCTGTAGCCCAAGTTTGTGCTT
CCACTAAGTGATATTCCCCACTGACTAATAATATTTGAGAAGGCAGCAAAAGGACTATTT
TCTACCCCATTTATATATAAAGAAGCTTTTGAGATGTCAATATTACAAAAACAACAAGAA
CACACACAATTAACTTTTTAAAACAAAACAGAAACACTTGTGTCTCTTGGGCACCTGAGG
CCCCAAGAGCTGCCACCCCCTCCCCTCATGCATTTATAGTTGTTAATTTGCAGCCTTCAT
TTTTCTGAAGCAAATCAGTACATTTTGAAATCCATATTTCATGGAGCTACTTAACTAATT
GCTGCAATCAGAGGTAGTTTATTTTATAGCAGGGCTGTTCAGATCACTCTGAGGTTGGCA
TACCATACGCAGTGTTTTTTACAATCATATGTTTAATGATGAGTTTTAATAAGGGAGCAT
CGTTTATCTGCTAATATTCTCCTGAAGTTCTAACTTTGGTCCTGTATTTTACCTTTACCC
AGTGCTTGCTTAAAAGGCCATAGCAAAGTCATTGACCCAGTGGGTGCACCAGCTGTAGGA
GAGACTGCCCCATTTAGAAGGACCCGGAGAGGGAAAGAGCACCTTGTTTTTCTTCTTATT
TGGAGACCCTCATTAAATTACTCAAGAAACAATAATCAGATAGCTGCTGTTCAAGTTAAT
GGCACCTCTGAGTCCCTGTCAAGAGAGCTTTATTTAATGCACAACAGACCTGGAGTGATG
CAGGTGCCTTTTCAGGCCCTCATTTAATTTAAGCTGCTTTAGTTGGCATGGCAACTAGTT
GAGACATCTGGGAGACATTATGCTGGGGATTGAGACTTCAGAGGATTTCTGCTAGAGCAG
AGCAGAAACCTTATCATAAAGTGGTATGTGTTGCTTCTAAATTTCTGAAGCTATATTGTT
AAGTCTCCAAATTCAGGAATTGTAATTTCCAGAGAAATAAAATTTTAAAAGGTTGGCCTA
GTGGTTGGCTTGTGTTCTGTGACAGAAAAAAAAAAAGAAATGCTTGGAGTGAAAAGTATT
TCAACCCTAAAGAATTCATCTTGCTAAACTAAAGCTTAAGAAAACTTACTCTCTGCAGAG
TGGCTGTTTCAATCACTTTGTAAAAATCATACATTTAAAAGTTCTCATTCTTTTATGTTT
AAAAGATATTAGAGGAGGGGAAAGCATGTCTACAAAATTGTAAACAAAATGGTGAAGGTA
AACAGGGCTCTATGCGGTTTTGCCCTAGACTTTGTGGTTAGATCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGAACTTGGTATGTGACCTTGGGTAAATCACATGACCTCTGTAGCCCAAGTTTGTGCTT
CCACTAAGTGATATTCCCCACTGACTAATAATATTTGAGAAGGCAGCAAAAGGACTATTT
TCTACCCCATTTATATATAAAGAAGCTTTTGAGATGTCAATATTACAAAAACAACAAGAA
CACACACAATTAACTTTTTAAAACAAAACAGAAACACTTGTGTCTCTTGGGCACCTGAGG
CCCCAAGAGCTGCCACCCCCTCCCCTCATGCATTTATAGTTGTTAATTTGCAGCCTTCAT
TTTTCTGAAGCAAATCAGTACATTTTGAAATCCATATTTCATGGAGCTACTTAACTAATT
GCTGCAATCAGAGGTAGTTTATTTTATAGCAGGGCTGTTCAGATCACTCTGAGGTTGGCA
TACCATACGCAGTGTTTTTTACAATCATATGTTTAATGATGAGTTTTAATAAGGGAGCAT
CGTTTATCTGCTAATATTCTCCTGAAGTTCTAACTTTGGTCCTGTATTTTACCTTTACCC
AGTGCTTGCTTAAAAGGCCATAGCAAAGTCATTGACCCAGTGGGTGCACCAGCTGTAGGA
GAGACTGCCCCATTTAGAAGGACCCGGAGAGGGAAAGAGCACCTTGTTTTTCTTCTTATT
TGGAGACCCTCATTAAATTACTCAAGAAACAATAATCAGATAGCTGCTGTTCAAGTTAAT
GGCACCTCTGAGTCCCTGTCAAGAGAGCTTTATTTAATGCACAACAGACCTGGAGTGATG
CAGGTGCCTTTTCAGGCCCTCATTTAATTTAAGCTGCTTTAGTTGGCATGGCAACTAGTT
GAGACATCTGGGAGACATTATGCTGGGGATTGAGACTTCAGAGGATTTCTGCTAGAGCAG
AGCAGAAACCTTATCATAAAGTGGTATGTGTTGCTTCTAAATTTCTGAAGCTATATTGTT
AAGTCTCCAAATTCAGGAATTGTAATTTCCAGAGAAATAAAATTTTAAAAGGTTGGCCTA
GTGGTTGGCTTGTGTTCTGTGACAGAAAAAAAAAAAGAAATGCTTGGAGTGAAAAGTATT
TCAACCCTAAAGAATTCATCTTGCTAAACTAAAGCTTAAGAAAACTTACTCTCTGCAGAG
TGGCTGTTTCAATCACTTTGTAAAAATCATACATTTAAAAGTTCTCATTCTTTTATGTTT
AAAAGATATTAGAGGAGGGGAAAGCATGTCTACAAAATTGTAAACAAAATGGTGAAGGTA
AACAGGGCTCTATGCGGTTTTGCCCTAGACTTTGTGGTTAGATCAAAA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               119-235, - strand, RNAz p=0.563668
               

               
               275-470, - strand, RNAz p=0.971717
               

               
               749-988, + strand, RNAz p=0.969625

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               119-235, - strand, RNAz p=0.563668
               

               
               275-470, - strand, RNAz p=0.971717
               

               
               749-988, + strand, RNAz p=0.969625

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1306, gnl|bosTau2|chr19 (13174034-13175338)
               

               
               1-1306, gnl|Hg17|chr17 (23501603-23502835)
               

               
               1-1306, gnl|Mm7|chr11 (78679276-78678046)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1306, gnl|bosTau2|chr19 (13174034-13175338)
               

               
               1-1306, gnl|Hg17|chr17 (23501603-23502835)
               

               
               1-1306, gnl|Mm7|chr11 (78679276-78678046)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cmu (0.186393)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.186393)

	119-235, - strand, RNAz p=0.563668
	275-470, - strand, RNAz p=0.971717
	749-988, + strand, RNAz p=0.969625

	1-1306, gnl\|bosTau2\|chr19 (13174034-13175338)
	1-1306, gnl\|Hg17\|chr17 (23501603-23502835)
	1-1306, gnl\|Mm7\|chr11 (78679276-78678046)