Ss1.1-Pig4-TMW8045M20.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTTTTTTTTTTTTAAACACACGTGGCAGGCTTGTCTGTCTCTAGCACACACCGGGTAG CAAATGGGGTAATATTTTTTATAGAGGGGGGCAAAAATTATTTTCACAGTTTTACCAACT AGGCATGTAAAGTACAGCCAGACTTCCAGTTAATTGCCTTATTTTCCCTGCATTACAGGT CACTTAAAACAGTTTTTCAAGGAAAGGTTTACCAGTTTTTCCATTCCTGAATACTCAATG CTAGGTTGCGGTTGGGGATCACGAAGCACAGAATGTCAGAGAAGATCCTTCTGTTTAAAT CTAGTGTATATGTGATCAGGACTTGCCAATTCTTCATTTTAAACATGTTTCGAAATTGCT CTTTATTAGTGCAAGTGATAGGACTACCCTTATAGTATTAGATTAAAACAGATCATTCAT TATATTATAAATCTCTGTTTTGCTATGTCCTAGTTCTGTCGTACTACCTAGAGATGTAAA CAAAACATATTGCTCTAGAAAGTGGTGTCTCTTTGTTCTCCCCCTGAAGAATACAGTTTG TTAATACCTACGTTTTTAGACTGTTGAAACTGGCCCAAGTATGGAAGAAATACCATATTG GCTCAGACCCAAGGAGATGTTTTCTAGAATCAACTTTCATTAATTTACTTCCAACTTCTG TTCCTGGATCTGGTGTCTCCTAAAACGTAAGAAACCAGACACTACTAATGACAAATCATC TGCTCATTATAAATGTGAGGTTTAACAAATAAGTAATACATGCTATATTTTATTCATGTC TATTGCTTAATTGTTAATTGTGAGCGGATTATTGAATGCCTACTCTATTTTCTGCAGTTT ACTGTACAGTAACTCTTTGAGTAAGTTGAAGTTTAATTGTGCAACAAATTTATATTAGAA TACAATTTAAAGTGTTTTTCCTCTATAGACTTTTTTGACCAGAGAAGCAAAGGGCAGTGT TGATTAGTACATTTTGTCTTGTACTAGCTATGTTTCTGTAAGATAGGATGCCCTGCGTAT CCCAGAGAGCTAGAAAACTGTTCTTTGCTCTCATTTGTGGGTTCCATTTTTGTGTTTTTT TTTTGAGAACATGCGTACAATAAAATATTCCTTGCTTGTTAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTTTTTTTTTTTTAAACACACGTGGCAGGCTTGTCTGTCTCTAGCACACACCGGGTAG CAAATGGGGTAATATTTTTTATAGAGGGGGGCAAAAATTATTTTCACAGTTTTACCAACT AGGCATGTAAAGTACAGCCAGACTTCCAGTTAATTGCCTTATTTTCCCTGCATTACAGGT CACTTAAAACAGTTTTTCAAGGAAAGGTTTACCAGTTTTTCCATTCCTGAATACTCAATG CTAGGTTGCGGTTGGGGATCACGAAGCACAGAATGTCAGAGAAGATCCTTCTGTTTAAAT CTAGTGTATATGTGATCAGGACTTGCCAATTCTTCATTTTAAACATGTTTCGAAATTGCT CTTTATTAGTGCAAGTGATAGGACTACCCTTATAGTATTAGATTAAAACAGATCATTCAT TATATTATAAATCTCTGTTTTGCTATGTCCTAGTTCTGTCGTACTACCTAGAGATGTAAA CAAAACATATTGCTCTAGAAAGTGGTGTCTCTTTGTTCTCCCCCTGAAGAATACAGTTTG TTAATACCTACGTTTTTAGACTGTTGAAACTGGCCCAAGTATGGAAGAAATACCATATTG GCTCAGACCCAAGGAGATGTTTTCTAGAATCAACTTTCATTAATTTACTTCCAACTTCTG TTCCTGGATCTGGTGTCTCCTAAAACGTAAGAAACCAGACACTACTAATGACAAATCATC TGCTCATTATAAATGTGAGGTTTAACAAATAAGTAATACATGCTATATTTTATTCATGTC TATTGCTTAATTGTTAATTGTGAGCGGATTATTGAATGCCTACTCTATTTTCTGCAGTTT ACTGTACAGTAACTCTTTGAGTAAGTTGAAGTTTAATTGTGCAACAAATTTATATTAGAA TACAATTTAAAGTGTTTTTCCTCTATAGACTTTTTTGACCAGAGAAGCAAAGGGCAGTGT TGATTAGTACATTTTGTCTTGTACTAGCTATGTTTCTGTAAGATAGGATGCCCTGCGTAT CCCAGAGAGCTAGAAAACTGTTCTTTGCTCTCATTTGTGGGTTCCATTTTTGTGTTTTTT TTTTGAGAACATGCGTACAATAAAATATTCCTTGCTTGTTAAAAAAAAAAAAAAAAAAAA |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 688-840, - strand, RNAz p=0.996761 | |
| 694-889, + strand, RNAz p=0.999698 | |
| 923-1077, - strand, RNAz p=0.970914 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 688-840, - strand, RNAz p=0.996761 | |
| 694-889, + strand, RNAz p=0.999698 | |
| 923-1077, - strand, RNAz p=0.970914 |
| Predicted microRNA(s): 2 entry(ies) | More info |
| Predicted microRNA(s): 2 entry(ies) | Help | Less info |
| 731-835, + strand, RNAmicro p=0.99999 | |
| 732-834, - strand, RNAmicro p=0.91556 |
| Predicted microRNA(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
| 731-835, + strand, RNAmicro p=0.99999 | |
| 732-834, - strand, RNAmicro p=0.91556 |
| Similar Transcript(s): 6 entry(ies) | More info |
| Similar Transcript(s): 6 entry(ies) | Help | Less info |
| 701-889, 4085213 BARC 9BOV Bos taurus cDNA clone 9BOV2_H06 3', mRNA sequence (gb|CK969594.1|), blast E-value=0, identity=89.95% | |
| 701-889, 1371704 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN535666.1|), blast E-value=0, identity=90.48% | |
| 701-889, 1373240 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN537090.1|), blast E-value=0, identity=90.48% | |
| 701-889, UMC-bcl_0A02-035-a06 Day 14 CL from a pregnant animal bcl Bos (gb|DN637290.1|), blast E-value=0, identity=90.48% | |
| 701-889, LB0228.CR_D04 GC_BGC-22 Bos taurus cDNA clone IMAGE (gb|EE244501.1|), blast E-value=0, identity=90.48% | |
| 701-889, LB02315.CR_M24 GC_BGC-23 Bos taurus cDNA clone IMAGE (gb|EE246682.1|), blast E-value=0, identity=90.48% |
| Similar Transcript(s): 6 entry(ies) | Help | Less info |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
| 701-889, 4085213 BARC 9BOV Bos taurus cDNA clone 9BOV2_H06 3', mRNA sequence (gb|CK969594.1|), blast E-value=0, identity=89.95% | |
| 701-889, 1371704 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN535666.1|), blast E-value=0, identity=90.48% | |
| 701-889, 1373240 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN537090.1|), blast E-value=0, identity=90.48% | |
| 701-889, UMC-bcl_0A02-035-a06 Day 14 CL from a pregnant animal bcl Bos (gb|DN637290.1|), blast E-value=0, identity=90.48% | |
| 701-889, LB0228.CR_D04 GC_BGC-22 Bos taurus cDNA clone IMAGE (gb|EE244501.1|), blast E-value=0, identity=90.48% | |
| 701-889, LB02315.CR_M24 GC_BGC-23 Bos taurus cDNA clone IMAGE (gb|EE246682.1|), blast E-value=0, identity=90.48% |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_020830, + |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 5-305, gnl|bosTau2|chr2 (68169222-68168925) | |
| 5-305, gnl|canFam2|chr37 (32631962-32633270) | |
| 5-305, gnl|echTel1|scaffold_324671 (39350-40651) | |
| 5-305, gnl|hg17|chr2 (224565459-224566821) | |
| 5-305, gnl|Hg17|chr2 (224566704-224566390) | |
| 5-305, gnl|loxAfr1|scaffold_7121 (21014-22401) | |
| 5-305, gnl|mm7|chr1 (79922901-79924219) | |
| 5-305, gnl|Mm7|chr1 (79924102-79923816) | |
| 5-305, gnl|monDom2|scaffold_28 (4874580-4875924) | |
| 5-305, gnl|oryCun1|scaffold_205710 (21470-22796) | |
| 5-305, gnl|panTro1|chr13 (115150157-115151524) | |
| 5-305, gnl|rheMac2|chr12 (87752071-87753479) | |
| 5-305, gnl|rn3|chr9 (79190551-79191852) | |
| 312-1121, gnl|bosTau2|chr2 (68168864-68168051) | |
| 312-1121, gnl|canFam2|chr37 (32632055-32632585) | |
| 312-1121, gnl|canFam2|chr37 (32631962-32633270) | |
| 312-1121, gnl|echTel1|scaffold_324671 (39461-39979) | |
| 312-1121, gnl|echTel1|scaffold_324671 (39350-40651) | |
| 312-1121, gnl|hg17|chr12 (75546890-75547407) | |
| 312-1121, gnl|hg17|chr2 (224565459-224566821) | |
| 312-1121, gnl|Hg17|chr2 (224566382-224565570) | |
| 312-1121, gnl|loxAfr1|scaffold_7121 (21127-21669) | |
| 312-1121, gnl|loxAfr1|scaffold_7121 (21014-22401) | |
| 312-1121, gnl|mm7|chr1 (79923007-79923548) | |
| 312-1121, gnl|mm7|chr1 (79922901-79924219) | |
| 312-1121, gnl|Mm7|chr1 (79923812-79923005) | |
| 312-1121, gnl|monDom2|scaffold_28 (4874653-4875183) | |
| 312-1121, gnl|monDom2|scaffold_28 (4874580-4875924) | |
| 312-1121, gnl|oryCun1|scaffold_205710 (21581-22103) | |
| 312-1121, gnl|oryCun1|scaffold_205710 (21470-22796) | |
| 312-1121, gnl|panTro1|chr10 (77089721-77090242) | |
| 312-1121, gnl|panTro1|chr13 (115150157-115151524) | |
| 312-1121, gnl|rheMac2|chr11 (73644331-73644851) | |
| 312-1121, gnl|rheMac2|chr12 (87752071-87753479) | |
| 312-1121, gnl|rn3|chr9 (79190670-79191186) | |
| 312-1121, gnl|rn3|chr9 (79190551-79191852) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 5-305, gnl|bosTau2|chr2 (68169222-68168925) | |
| 5-305, gnl|canFam2|chr37 (32631962-32633270) | |
| 5-305, gnl|echTel1|scaffold_324671 (39350-40651) | |
| 5-305, gnl|hg17|chr2 (224565459-224566821) | |
| 5-305, gnl|Hg17|chr2 (224566704-224566390) | |
| 5-305, gnl|loxAfr1|scaffold_7121 (21014-22401) | |
| 5-305, gnl|mm7|chr1 (79922901-79924219) | |
| 5-305, gnl|Mm7|chr1 (79924102-79923816) | |
| 5-305, gnl|monDom2|scaffold_28 (4874580-4875924) | |
| 5-305, gnl|oryCun1|scaffold_205710 (21470-22796) | |
| 5-305, gnl|panTro1|chr13 (115150157-115151524) | |
| 5-305, gnl|rheMac2|chr12 (87752071-87753479) | |
| 5-305, gnl|rn3|chr9 (79190551-79191852) | |
| 312-1121, gnl|bosTau2|chr2 (68168864-68168051) | |
| 312-1121, gnl|canFam2|chr37 (32632055-32632585) | |
| 312-1121, gnl|canFam2|chr37 (32631962-32633270) | |
| 312-1121, gnl|echTel1|scaffold_324671 (39461-39979) | |
| 312-1121, gnl|echTel1|scaffold_324671 (39350-40651) | |
| 312-1121, gnl|hg17|chr12 (75546890-75547407) | |
| 312-1121, gnl|hg17|chr2 (224565459-224566821) | |
| 312-1121, gnl|Hg17|chr2 (224566382-224565570) | |
| 312-1121, gnl|loxAfr1|scaffold_7121 (21127-21669) | |
| 312-1121, gnl|loxAfr1|scaffold_7121 (21014-22401) | |
| 312-1121, gnl|mm7|chr1 (79923007-79923548) | |
| 312-1121, gnl|mm7|chr1 (79922901-79924219) | |
| 312-1121, gnl|Mm7|chr1 (79923812-79923005) | |
| 312-1121, gnl|monDom2|scaffold_28 (4874653-4875183) | |
| 312-1121, gnl|monDom2|scaffold_28 (4874580-4875924) | |
| 312-1121, gnl|oryCun1|scaffold_205710 (21581-22103) | |
| 312-1121, gnl|oryCun1|scaffold_205710 (21470-22796) | |
| 312-1121, gnl|panTro1|chr10 (77089721-77090242) | |
| 312-1121, gnl|panTro1|chr13 (115150157-115151524) | |
| 312-1121, gnl|rheMac2|chr11 (73644331-73644851) | |
| 312-1121, gnl|rheMac2|chr12 (87752071-87753479) | |
| 312-1121, gnl|rn3|chr9 (79190670-79191186) | |
| 312-1121, gnl|rn3|chr9 (79190551-79191852) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| ece (0.229305) | |
| hea (0.204499) | |
| fcc (0.197785) | |
| ldo (0.194005) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| rec (0.17307) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| nco (0.161734) | |
| liv (0.146284) | |
| lin (0.145603) | |
| thg (0.126791) | |
| pgl (0.118483) | |
| cty (0.10408) | |
| eje (0.0988338) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ece (0.229305) | |
| hea (0.204499) | |
| fcc (0.197785) | |
| ldo (0.194005) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| rec (0.17307) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| nco (0.161734) | |
| liv (0.146284) | |
| lin (0.145603) | |
| thg (0.126791) | |
| pgl (0.118483) | |
| cty (0.10408) | |
| eje (0.0988338) |