Non-Coding RNA Search

Ss1.1-Pig4-TMW8045M21.3

Sequence:


               
               ACAGTGACAGCAGCTGGAGCCAGCTCAGAGCCGCCGGAAGGGCCCCACTGTTGGGGACCA
CTCTGGGCCACCTTTGGGAGTGTGCATTTAACTGTTTCATGCCAGTGTTAGCACAGCTCT
AGCTGGAGCTAGCAGGCAGGCATGCTGGGCTTTTCTCTGAGGGGCTTTGTCTGTCAGTTT
CCCTATAACTTTGCTGTAATCTTTTGTTTCTTAAGGGGGACACATGCTCCGGTTCGGTCC
CTCAGGTTGGCATGACGTTTGTCTAGGTATCAGCGCCCCCTGGGACTCCCTGTACACCAG
GCTCTGGGGAGGGAGGAGGTTGTCGGGAAGGGCTTGTGCTCAGCAGGTCAGTATGGAATT
TGGCCCTTCTCCTCGGGCCTCATTAAACACAAGGGGCTGGTGGGTCATTTAAAGCTGCAG
CCAGGTCATGCCCGCTCCTTCCCACTCCTGCCGAGTCAGGCTGTGCCTGTCCCTGTGATT
TGGATGAGGCAGCCCTTCAGGGCAAACTCAAGTGCGCTTGTTGCCTCAGCAGGTCCTGCT
CCACGTGGCAGCGGTTGAGAAGGGTGCAGGGCTCTCAAGTGTGAAGGTCTTTGTCCTCTG
GGCTTATTTTCTGGGGTATCCTCTTGGCAGCACATAAGGTCTACCTTAAGCTGGAGCTGC
AGGCCCCATTGACACAGATGATGTGGTCCCTCTGTGCACCTACCTCCTGCCCCATCGAGC
ATCTGTACTGGCCTGGAGGAGAGGCCCCTGCCTCTGAGCCTAGAAATGTGAAGTTGGCAC
CTGCAACCTGCTGGGCAAGTGGGCCTATCCAAGTTCATTTACAAGAACAATTTTTATGAA
GTTGATTAAAGCTTGTTTTTTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAGTGACAGCAGCTGGAGCCAGCTCAGAGCCGCCGGAAGGGCCCCACTGTTGGGGACCA
CTCTGGGCCACCTTTGGGAGTGTGCATTTAACTGTTTCATGCCAGTGTTAGCACAGCTCT
AGCTGGAGCTAGCAGGCAGGCATGCTGGGCTTTTCTCTGAGGGGCTTTGTCTGTCAGTTT
CCCTATAACTTTGCTGTAATCTTTTGTTTCTTAAGGGGGACACATGCTCCGGTTCGGTCC
CTCAGGTTGGCATGACGTTTGTCTAGGTATCAGCGCCCCCTGGGACTCCCTGTACACCAG
GCTCTGGGGAGGGAGGAGGTTGTCGGGAAGGGCTTGTGCTCAGCAGGTCAGTATGGAATT
TGGCCCTTCTCCTCGGGCCTCATTAAACACAAGGGGCTGGTGGGTCATTTAAAGCTGCAG
CCAGGTCATGCCCGCTCCTTCCCACTCCTGCCGAGTCAGGCTGTGCCTGTCCCTGTGATT
TGGATGAGGCAGCCCTTCAGGGCAAACTCAAGTGCGCTTGTTGCCTCAGCAGGTCCTGCT
CCACGTGGCAGCGGTTGAGAAGGGTGCAGGGCTCTCAAGTGTGAAGGTCTTTGTCCTCTG
GGCTTATTTTCTGGGGTATCCTCTTGGCAGCACATAAGGTCTACCTTAAGCTGGAGCTGC
AGGCCCCATTGACACAGATGATGTGGTCCCTCTGTGCACCTACCTCCTGCCCCATCGAGC
ATCTGTACTGGCCTGGAGGAGAGGCCCCTGCCTCTGAGCCTAGAAATGTGAAGTTGGCAC
CTGCAACCTGCTGGGCAAGTGGGCCTATCCAAGTTCATTTACAAGAACAATTTTTATGAA
GTTGATTAAAGCTTGTTTTTTAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-863, gnl|bosTau2|chr25 (34799622-34798769)
               

               
               1-863, gnl|Hg17|chr7 (98698768-98699647)
               

               
               1-863, gnl|Mm7|chr5 (144209838-144210682)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-863, gnl|bosTau2|chr25 (34799622-34798769)
               

               
               1-863, gnl|Hg17|chr7 (98698768-98699647)
               

               
               1-863, gnl|Mm7|chr5 (144209838-144210682)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               amn (0.417711)
               

               
               nms (0.213858)
               

               
               nje (0.16592)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               nms (0.213858)
               

               
               nje (0.16592)

	1-863, gnl\|bosTau2\|chr25 (34799622-34798769)
	1-863, gnl\|Hg17\|chr7 (98698768-98699647)
	1-863, gnl\|Mm7\|chr5 (144209838-144210682)