Non-Coding RNA Search

Ss1.1-Pig4-TMW8045M23.3

Sequence:


               
               TCGAGCAATGGTAGCAGTCATGTTGAAAACATTCAAGGAGCAGGCGGCAGTCCTGTTTCC
TGGGAACATTTCTTTCACTCCTTGATGCTTTACCACGAACACCTCCGGAAGGATCTTCCG
AGTGCGGATAGTGTCCAGTACCGTCACCTTCCTTCACGTGGCATCACCCAGAAGGAGCAA
GATGGATTGATTGCCTTTTTACAGCTCACATCTACCATCATTACTTGGAGTGAAAATGCT
CGCTTGGCACTCTGTGAACATCCTCAGTGGACCCCTGTCGTGGTGATTCTGGGACTCCTG
CAGTGCAGTATTCCTCCTGTTCTAAAGGCCGAACTACTGAAGACACTTGCAGCATTTGGA
AAATCTCCTGAAATTGCCGCTTCCCTCTGGCAGTCGTTGGAATACACTCAGATACTGCAG
ACCGTAAGGGTGCCAAGCCAGAGGCAAGCTATTGGTATTGAGGTGGAACTAAATGAAATA
GAATCCCGGTGTGAAGAATACCCATTGACTCGTGCTTTTTGCCATCTAATTAGCACCCTG
GTAGAGAGCTCCTTTCCTTCTAATTTGGGTGCTGGACTGCGGCCCCCCGGCTTTGACCCT
TATTTGCAGTTTCTTAGAGATTCCGTGTTTCTCCGATTCCGCACAAGAGCTTACCGGAGA
GCCGCTGAAAAGTGGGAAGTTGCTGAGGTTGTTTTGGAGGTGTTCTATAAATTGCTCAGA
GATTATGAACCTCAACTTGAAGATTTTGTAGATCAGTTTGTGGAACTACAAGGAGAAGAA
ATCATAGCTCTTTCACCTCACCTCCGCCAGCGGAGAACCCTGTGGTGGGGTTTGCTTCTA
TTGGAGATTCTTCACTTCACATCATATTGAAGAAACTCTTAGACTTCATTTTGAAGACAG
GTGGTGGGTTCCAGCGAGTGAGGACACACCTGTATGGCTCTCTGCTGTATTACTTACAGA
TTGCCCAGAGACCAGATGAACCAGACACCTTAGAAGCAGCCAAGAAAACCATGTGGGAAA
GGCTGACAGCCCCTGAAGATGTATTTAGTAAATTACAACGAGAAAACATAGCCATCATTG
AGAGCTATGGTGCCGCCCTCATGGAAGTGGTCTGTCGAGATGCTTGTGATGGTCATGAGA
TTGGAAGGATGCTGGCACTGGCTCTGCTTGATCGGATTGTTTCTGTAGATAAGCAGCAGC
AGTGGCTTTTGTATCTTTCGAACAGTGGCTATTTGAAGGTGCTTGTGGACAGCTTGGTAG
AAGATGACCGCACTTTGCAGAGCTTACTCACTCCACAGCCTCCCCTTTTAAAAGCTCTTT
ACACTTATGAATCCAAAATGGCATTTCTCACAAGAGTGGCCAAGATACAGCAGGGTGCTT
TAGAGCTACTGAGGTCTGGGGTTATTGTGAGACTGGCACAGTGCCAAGTCTATGACATGC
GCCCAGAAATGGACCCACAGGGCATGTTTGGCATGAGAGACCCACCAGTGTTCATCCCTA
CTCCGGTGGACCGGTACCGCCAGATTCTCCTTCCTGCTCTCCGTTTGTGCCAGGTCATCC
TCACGTCTAGTATGGCCCAGCACTTGCAGGCAGCAGGGCAGGTGTTGCAGTTTCTCATTT
CGCATTCTGATACCATACAGGCAATCCTGCGCTGTCAGGATGTTAGTGCTGGGTCTTTGC
AGGAATTGGCTCTGCTGACAGGAATTATAAGTAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGAGCAATGGTAGCAGTCATGTTGAAAACATTCAAGGAGCAGGCGGCAGTCCTGTTTCC
TGGGAACATTTCTTTCACTCCTTGATGCTTTACCACGAACACCTCCGGAAGGATCTTCCG
AGTGCGGATAGTGTCCAGTACCGTCACCTTCCTTCACGTGGCATCACCCAGAAGGAGCAA
GATGGATTGATTGCCTTTTTACAGCTCACATCTACCATCATTACTTGGAGTGAAAATGCT
CGCTTGGCACTCTGTGAACATCCTCAGTGGACCCCTGTCGTGGTGATTCTGGGACTCCTG
CAGTGCAGTATTCCTCCTGTTCTAAAGGCCGAACTACTGAAGACACTTGCAGCATTTGGA
AAATCTCCTGAAATTGCCGCTTCCCTCTGGCAGTCGTTGGAATACACTCAGATACTGCAG
ACCGTAAGGGTGCCAAGCCAGAGGCAAGCTATTGGTATTGAGGTGGAACTAAATGAAATA
GAATCCCGGTGTGAAGAATACCCATTGACTCGTGCTTTTTGCCATCTAATTAGCACCCTG
GTAGAGAGCTCCTTTCCTTCTAATTTGGGTGCTGGACTGCGGCCCCCCGGCTTTGACCCT
TATTTGCAGTTTCTTAGAGATTCCGTGTTTCTCCGATTCCGCACAAGAGCTTACCGGAGA
GCCGCTGAAAAGTGGGAAGTTGCTGAGGTTGTTTTGGAGGTGTTCTATAAATTGCTCAGA
GATTATGAACCTCAACTTGAAGATTTTGTAGATCAGTTTGTGGAACTACAAGGAGAAGAA
ATCATAGCTCTTTCACCTCACCTCCGCCAGCGGAGAACCCTGTGGTGGGGTTTGCTTCTA
TTGGAGATTCTTCACTTCACATCATATTGAAGAAACTCTTAGACTTCATTTTGAAGACAG
GTGGTGGGTTCCAGCGAGTGAGGACACACCTGTATGGCTCTCTGCTGTATTACTTACAGA
TTGCCCAGAGACCAGATGAACCAGACACCTTAGAAGCAGCCAAGAAAACCATGTGGGAAA
GGCTGACAGCCCCTGAAGATGTATTTAGTAAATTACAACGAGAAAACATAGCCATCATTG
AGAGCTATGGTGCCGCCCTCATGGAAGTGGTCTGTCGAGATGCTTGTGATGGTCATGAGA
TTGGAAGGATGCTGGCACTGGCTCTGCTTGATCGGATTGTTTCTGTAGATAAGCAGCAGC
AGTGGCTTTTGTATCTTTCGAACAGTGGCTATTTGAAGGTGCTTGTGGACAGCTTGGTAG
AAGATGACCGCACTTTGCAGAGCTTACTCACTCCACAGCCTCCCCTTTTAAAAGCTCTTT
ACACTTATGAATCCAAAATGGCATTTCTCACAAGAGTGGCCAAGATACAGCAGGGTGCTT
TAGAGCTACTGAGGTCTGGGGTTATTGTGAGACTGGCACAGTGCCAAGTCTATGACATGC
GCCCAGAAATGGACCCACAGGGCATGTTTGGCATGAGAGACCCACCAGTGTTCATCCCTA
CTCCGGTGGACCGGTACCGCCAGATTCTCCTTCCTGCTCTCCGTTTGTGCCAGGTCATCC
TCACGTCTAGTATGGCCCAGCACTTGCAGGCAGCAGGGCAGGTGTTGCAGTTTCTCATTT
CGCATTCTGATACCATACAGGCAATCCTGCGCTGTCAGGATGTTAGTGCTGGGTCTTTGC
AGGAATTGGCTCTGCTGACAGGAATTATAAGTAAAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               22-140, + strand, RNAz p=0.585761

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               22-140, + strand, RNAz p=0.585761

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               22-228, gnl|bosTau2|chr4 (56370388-56370182)
               

               
               22-228, gnl|Hg17|chr7 (134734989-134735195)
               

               
               22-228, gnl|Mm7|chr6 (35131055-35131261)
               


               
               1148-1341, gnl|bosTau2|chr4 (56333743-56333550)
               

               
               1148-1341, gnl|Hg17|chr7 (134767166-134767359)
               

               
               1148-1341, gnl|Mm7|chr6 (35163600-35163793)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               22-228, gnl|bosTau2|chr4 (56370388-56370182)
               

               
               22-228, gnl|Hg17|chr7 (134734989-134735195)
               

               
               22-228, gnl|Mm7|chr6 (35131055-35131261)
               


               
               1148-1341, gnl|bosTau2|chr4 (56333743-56333550)
               

               
               1148-1341, gnl|Hg17|chr7 (134767166-134767359)
               

               
               1148-1341, gnl|Mm7|chr6 (35163600-35163793)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cje (0.165235)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.165235)

	22-228, gnl\|bosTau2\|chr4 (56370388-56370182)
	22-228, gnl\|Hg17\|chr7 (134734989-134735195)
	22-228, gnl\|Mm7\|chr6 (35131055-35131261)

	1148-1341, gnl\|bosTau2\|chr4 (56333743-56333550)
	1148-1341, gnl\|Hg17\|chr7 (134767166-134767359)
	1148-1341, gnl\|Mm7\|chr6 (35163600-35163793)