Ss1.1-Pig4-TMW8045M24.3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGAGTGTATGCAAGATTTCAATACCATGTTCACTAACTGTTACATCTACAACAAGCCCA CTGATGATATTGTCCTGATGGCACAAACGCTGGAAAAGATCTTCCTACAGAAAGTGGCGT CAATGCCACAAGAGGAACAAGAACTCGTGGTGACTATCCCTAAGAACAGCCACAAGAAGG GGGCCAAATTGGCAGCACTCCAGGGCAGTATCACCAGTGCCCATCAGGTGCCTGCAGTCT CTTCTGTGTCTCACACAACCTTGTATACTCCACCACCCGAGATACCTACCACTGTCCTCA ACATTCCCCACCCATCGGTCATCTCTTCGCCCCTTCTCAAGTCCTTGCACTCCGCTGGAC CCCCGCTCCTTGCTGTCTCTGCAGCTCCCCCAGCCCAGCCCCTTGCCAAGAAAAAAGGGG TAAAGCGAAAAGCAGATACTACCACCCCTACACCTACAGCCATTCTGGCTCCTGGCTCCC CAGCTAGCCCTCCCGGGGGTCTTGAGCCTAAGGCAGCACGGCTTCCCCCTATGCGTAGAG AGAGTGGCCGTCCCATCAAGCCCCCACGCAAAGACTTGCCTGACTCTCAGCAGCAACACC AGAGCTCCAAGAAAGGAAAGTTGTCAGAACAATTGAAACATTGCAATGGCATCTTGAAGG AGTTGCTTTCGAAGAAGCATGCTGCTTATGCCTGGCCTTTCTATAAACCAGTGGACGCTT CTGCTCTTGGCCTGCATGACTACCATGACATCATTAAGCACCCCATGGACCTCAGCACTG TCAAGCGGAAGATGGAGAATCGTGATTACCGAGATGCACAGGAGTTTGCTGCTGACGTGC GGCTTATGTTTTCCAACTGTTATAAGTATAATCCTCCAGACCACGATGTTGTGGCCATGG CGCGAAAGTTACAGGATGTGTTTGAGTTCCGTTATGCCAAGATGCCAGATGAACCGCTAG AACCAGGTCCTTTACCAGTCTCGACTGCCTTGCCTCCTGGCTTGGCCAAGTCGTCTTCAG AGTCCTCTAGTGAGGAAAGTAGCAGTGAGAGCTCTTCTGAGGAGGAGGAGGAGGAAGATG AGGAGGAGGAAGAGGAGGAAGAAGAGAGTGAAAGCTCTGACTCTGAGGAAGAAAGAGCTC ATCGCTTGGCTGAACTGCAAGAACAGCTTCGAGCAGTACATGAACAACTGGCTGCGCTGT CCCAAGGCCCAATATCAAAGCCCAAGCGGAAGAGGGAAAAAAAAGAGAAAAAGAAGAAAC GGAAGGCAGAGAAGCATCGAGGCCGAGCTGGGGGTGATGAAGATGACAAAGGGCCTCGGG CACCCCGCCCATCTCAACCCAAGAAGTCCAAGAAAGCAAGTGGCAGTGGGGGTGGCAGTG CTGCTACATTGGGTCCTCCTGGCTTTGGACCTTCTGGAGGAAGTGGCACCAAACTCCCCA AAAAGGCCACAAAGACAGCCCCACCTACCCTGCCTGCAGGTTATGATTCAGAGGAGGAGG AGGAAAGCAGGCCCATGAGTTATGATGAAAAGCGGCAGCTGAGCCTAGACATCAACAAGT TGCCTGGGGAGAAGCTAGGCCGAGTTGTACACATAATCCAAGCCAGGGAGCCCTCTTTAC GTGACTCAAATCCAGAAGAAATTGAGATTGATTTTGAAACGCTCAAGCCATCCACGCTTA GAGAGCTTGAACGCTATGTCCTTTCCTGCCTACGAAAGAAACCTCGGAAGCCCTATACTA TTAAGAAACCTGTGGGAAAGACAAAGGAGGAACTGGCTTTGGAGAAGAAGCGGGAACTAG AAAAGCGCTTACAGGATGTTAGTGGGCAGCTCAACTCCACCAAAAAGCCCCCCAAGAAAG CGAGTGAGAAAACAGAGACATCATCGGCACAGCAGGTAGCAGTGTCACGCCTCAGCGCTT CCAGTTCCAGCTCAGATTCCAGCTCCTCCTCTTCATCTTCCTCTTCTTCAGACACCAGTG ATTCAGACTCAGGCTAAGGGGCCAGGCCAGATGGGGCAGGAGGCTCCGCAGGACCGGACC CCTAGACCACCCTGCCCCACCCCTTCCCTCCCTTTGCTGTGACACTTCCTCATCTCACCC CCCCTCCCCCCACTGTAGGAGAGCTGGCTCTGCAGGGGGAGGGATGCAGGGACAATTTCT GAAGGAGGGACATAAATGGACAAAATAAGACTGAGTTCCCAGCCCCATTGAAAGTGACCT CTTGGGCATAGGGCTCCCATTCGAAATGACTGAGGTGGGGCAGGGGTACAGGGTGGGACT GGGCAAAGGCCCTGATAAGGGGTTACCTGAGGCCGTAGCTGCCCTGTTCACTTGTGAGGG CCCTGTTTTGAGGTTGTTTTGTTCTAATTTATTTTAAGCTAGGTAAGGCTGAGGGGGTGG GGCCATGGTCCCCTCGGCTTCCATGGGGAGGGAGGAAGGGGGAACTCTTTTTTTACGTTG ACTTTTTTTTTTCTACTCTTTTTCCCTTTTCCTTCTGCTCCAATTTGGGGCTCCTGGGGG TTTAGTCATCTCCCCATTCAGTCCCCCTGGATTGTCTTTTCTTTGTCTGTTGATTCTAAC TTGTAAATAAAGAAAATATTATTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGAGTGTATGCAAGATTTCAATACCATGTTCACTAACTGTTACATCTACAACAAGCCCA CTGATGATATTGTCCTGATGGCACAAACGCTGGAAAAGATCTTCCTACAGAAAGTGGCGT CAATGCCACAAGAGGAACAAGAACTCGTGGTGACTATCCCTAAGAACAGCCACAAGAAGG GGGCCAAATTGGCAGCACTCCAGGGCAGTATCACCAGTGCCCATCAGGTGCCTGCAGTCT CTTCTGTGTCTCACACAACCTTGTATACTCCACCACCCGAGATACCTACCACTGTCCTCA ACATTCCCCACCCATCGGTCATCTCTTCGCCCCTTCTCAAGTCCTTGCACTCCGCTGGAC CCCCGCTCCTTGCTGTCTCTGCAGCTCCCCCAGCCCAGCCCCTTGCCAAGAAAAAAGGGG TAAAGCGAAAAGCAGATACTACCACCCCTACACCTACAGCCATTCTGGCTCCTGGCTCCC CAGCTAGCCCTCCCGGGGGTCTTGAGCCTAAGGCAGCACGGCTTCCCCCTATGCGTAGAG AGAGTGGCCGTCCCATCAAGCCCCCACGCAAAGACTTGCCTGACTCTCAGCAGCAACACC AGAGCTCCAAGAAAGGAAAGTTGTCAGAACAATTGAAACATTGCAATGGCATCTTGAAGG AGTTGCTTTCGAAGAAGCATGCTGCTTATGCCTGGCCTTTCTATAAACCAGTGGACGCTT CTGCTCTTGGCCTGCATGACTACCATGACATCATTAAGCACCCCATGGACCTCAGCACTG TCAAGCGGAAGATGGAGAATCGTGATTACCGAGATGCACAGGAGTTTGCTGCTGACGTGC GGCTTATGTTTTCCAACTGTTATAAGTATAATCCTCCAGACCACGATGTTGTGGCCATGG CGCGAAAGTTACAGGATGTGTTTGAGTTCCGTTATGCCAAGATGCCAGATGAACCGCTAG AACCAGGTCCTTTACCAGTCTCGACTGCCTTGCCTCCTGGCTTGGCCAAGTCGTCTTCAG AGTCCTCTAGTGAGGAAAGTAGCAGTGAGAGCTCTTCTGAGGAGGAGGAGGAGGAAGATG AGGAGGAGGAAGAGGAGGAAGAAGAGAGTGAAAGCTCTGACTCTGAGGAAGAAAGAGCTC ATCGCTTGGCTGAACTGCAAGAACAGCTTCGAGCAGTACATGAACAACTGGCTGCGCTGT CCCAAGGCCCAATATCAAAGCCCAAGCGGAAGAGGGAAAAAAAAGAGAAAAAGAAGAAAC GGAAGGCAGAGAAGCATCGAGGCCGAGCTGGGGGTGATGAAGATGACAAAGGGCCTCGGG CACCCCGCCCATCTCAACCCAAGAAGTCCAAGAAAGCAAGTGGCAGTGGGGGTGGCAGTG CTGCTACATTGGGTCCTCCTGGCTTTGGACCTTCTGGAGGAAGTGGCACCAAACTCCCCA AAAAGGCCACAAAGACAGCCCCACCTACCCTGCCTGCAGGTTATGATTCAGAGGAGGAGG AGGAAAGCAGGCCCATGAGTTATGATGAAAAGCGGCAGCTGAGCCTAGACATCAACAAGT TGCCTGGGGAGAAGCTAGGCCGAGTTGTACACATAATCCAAGCCAGGGAGCCCTCTTTAC GTGACTCAAATCCAGAAGAAATTGAGATTGATTTTGAAACGCTCAAGCCATCCACGCTTA GAGAGCTTGAACGCTATGTCCTTTCCTGCCTACGAAAGAAACCTCGGAAGCCCTATACTA TTAAGAAACCTGTGGGAAAGACAAAGGAGGAACTGGCTTTGGAGAAGAAGCGGGAACTAG AAAAGCGCTTACAGGATGTTAGTGGGCAGCTCAACTCCACCAAAAAGCCCCCCAAGAAAG CGAGTGAGAAAACAGAGACATCATCGGCACAGCAGGTAGCAGTGTCACGCCTCAGCGCTT CCAGTTCCAGCTCAGATTCCAGCTCCTCCTCTTCATCTTCCTCTTCTTCAGACACCAGTG ATTCAGACTCAGGCTAAGGGGCCAGGCCAGATGGGGCAGGAGGCTCCGCAGGACCGGACC CCTAGACCACCCTGCCCCACCCCTTCCCTCCCTTTGCTGTGACACTTCCTCATCTCACCC CCCCTCCCCCCACTGTAGGAGAGCTGGCTCTGCAGGGGGAGGGATGCAGGGACAATTTCT GAAGGAGGGACATAAATGGACAAAATAAGACTGAGTTCCCAGCCCCATTGAAAGTGACCT CTTGGGCATAGGGCTCCCATTCGAAATGACTGAGGTGGGGCAGGGGTACAGGGTGGGACT GGGCAAAGGCCCTGATAAGGGGTTACCTGAGGCCGTAGCTGCCCTGTTCACTTGTGAGGG CCCTGTTTTGAGGTTGTTTTGTTCTAATTTATTTTAAGCTAGGTAAGGCTGAGGGGGTGG GGCCATGGTCCCCTCGGCTTCCATGGGGAGGGAGGAAGGGGGAACTCTTTTTTTACGTTG ACTTTTTTTTTTCTACTCTTTTTCCCTTTTCCTTCTGCTCCAATTTGGGGCTCCTGGGGG TTTAGTCATCTCCCCATTCAGTCCCCCTGGATTGTCTTTTCTTTGTCTGTTGATTCTAAC TTGTAAATAAAGAAAATATTATTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 55-2605, - strand, RNAz p=0.978681 | |
| 55-195, - strand, RNAz p=0.995721 | |
| 1978-2289, - strand, RNAz p=0.87698 | |
| 2370-2475, + strand, RNAz p=0.659192 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 55-2605, - strand, RNAz p=0.978681 | |
| 55-195, - strand, RNAz p=0.995721 | |
| 1978-2289, - strand, RNAz p=0.87698 | |
| 2370-2475, + strand, RNAz p=0.659192 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of BC063840, + |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 55-195, gnl|bosTau2|chr23 (5654689-5654549) | |
| 55-195, gnl|canFam2|chr12 (5544819-5544909) | |
| 55-195, gnl|danRer3|chr19 (1979838-1979928) | |
| 55-195, gnl|dasNov1|scaffold_174390 (4722-4644) | |
| 55-195, gnl|echTel1|scaffold_216659 (2684-2594) | |
| 55-195, gnl|fr1|chrUn (274420016-274420106) | |
| 55-195, gnl|galGal2|chr16 (185974-185884) | |
| 55-195, gnl|hg17|chr6 (33051785-33051875) | |
| 55-195, gnl|Hg17|chr6 (33051784-33051924) | |
| 55-195, gnl|loxAfr1|scaffold_119444 (8223-8313) | |
| 55-195, gnl|mm7|chr17 (32195705-32195615) | |
| 55-195, gnl|Mm7|chr17 (32195704-32195564) | |
| 55-195, gnl|monDom2|scaffold_42 (15480163-15480073) | |
| 55-195, gnl|oryCun1|scaffold_99178 (6868-6958) | |
| 55-195, gnl|panTro1|chr5_random (24704003-24704093) | |
| 55-195, gnl|rheMac2|chr4 (32683873-32683963) | |
| 55-195, gnl|rn3|chr20 (4868264-4868354) | |
| 55-195, gnl|tetNig1|chrUn_random (10560494-10560404) | |
| 55-195, gnl|xenTro1|scaffold_1109 (194217-194304) | |
| 409-785, gnl|bosTau2|chr11 (83901162-83901535) | |
| 409-785, gnl|Hg17|chr9 (133943132-133942759) | |
| 409-785, gnl|Mm7|chr2 (27467141-27466768) | |
| 788-915, gnl|bosTau2|chr11 (83904092-83904219) | |
| 788-915, gnl|Hg17|chr9 (133940095-133939968) | |
| 788-915, gnl|Mm7|chr2 (27464346-27464219) | |
| 1430-1748, gnl|bosTau2|chr23 (5651840-5651521) | |
| 1430-1748, gnl|Hg17|chr6 (33055580-33055899) | |
| 1430-1748, gnl|Mm7|chr17 (32193382-32193061) | |
| 1482-1732, gnl|bosTau2|chr11 (83912569-83912819) | |
| 1482-1732, gnl|Hg17|chr9 (133930963-133930713) | |
| 1482-1732, gnl|Mm7|chr2 (27457823-27457573) | |
| 1859-2605, gnl|bosTau2|chr23 (5651064-5650322) | |
| 1859-2605, gnl|Hg17|chr6 (33056335-33057064) | |
| 1859-2605, gnl|Mm7|chr17 (32192606-32191927) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 55-195, gnl|bosTau2|chr23 (5654689-5654549) | |
| 55-195, gnl|canFam2|chr12 (5544819-5544909) | |
| 55-195, gnl|danRer3|chr19 (1979838-1979928) | |
| 55-195, gnl|dasNov1|scaffold_174390 (4722-4644) | |
| 55-195, gnl|echTel1|scaffold_216659 (2684-2594) | |
| 55-195, gnl|fr1|chrUn (274420016-274420106) | |
| 55-195, gnl|galGal2|chr16 (185974-185884) | |
| 55-195, gnl|hg17|chr6 (33051785-33051875) | |
| 55-195, gnl|Hg17|chr6 (33051784-33051924) | |
| 55-195, gnl|loxAfr1|scaffold_119444 (8223-8313) | |
| 55-195, gnl|mm7|chr17 (32195705-32195615) | |
| 55-195, gnl|Mm7|chr17 (32195704-32195564) | |
| 55-195, gnl|monDom2|scaffold_42 (15480163-15480073) | |
| 55-195, gnl|oryCun1|scaffold_99178 (6868-6958) | |
| 55-195, gnl|panTro1|chr5_random (24704003-24704093) | |
| 55-195, gnl|rheMac2|chr4 (32683873-32683963) | |
| 55-195, gnl|rn3|chr20 (4868264-4868354) | |
| 55-195, gnl|tetNig1|chrUn_random (10560494-10560404) | |
| 55-195, gnl|xenTro1|scaffold_1109 (194217-194304) | |
| 409-785, gnl|bosTau2|chr11 (83901162-83901535) | |
| 409-785, gnl|Hg17|chr9 (133943132-133942759) | |
| 409-785, gnl|Mm7|chr2 (27467141-27466768) | |
| 788-915, gnl|bosTau2|chr11 (83904092-83904219) | |
| 788-915, gnl|Hg17|chr9 (133940095-133939968) | |
| 788-915, gnl|Mm7|chr2 (27464346-27464219) | |
| 1430-1748, gnl|bosTau2|chr23 (5651840-5651521) | |
| 1430-1748, gnl|Hg17|chr6 (33055580-33055899) | |
| 1430-1748, gnl|Mm7|chr17 (32193382-32193061) | |
| 1482-1732, gnl|bosTau2|chr11 (83912569-83912819) | |
| 1482-1732, gnl|Hg17|chr9 (133930963-133930713) | |
| 1482-1732, gnl|Mm7|chr2 (27457823-27457573) | |
| 1859-2605, gnl|bosTau2|chr23 (5651064-5650322) | |
| 1859-2605, gnl|Hg17|chr6 (33056335-33057064) | |
| 1859-2605, gnl|Mm7|chr17 (32192606-32191927) |
| Expressed library(ies): 23 entry(ies) | More info |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
| eru (0.360144) | |
| clu (0.358938) | |
| eje (0.296501) | |
| fce (0.271592) | |
| cty (0.20816) | |
| fli (0.202881) | |
| nbm (0.198649) | |
| fcc (0.197785) | |
| nep (0.183925) | |
| duo (0.172801) | |
| cut (0.169924) | |
| nje (0.16592) | |
| cje (0.165235) | |
| lin (0.145603) | |
| pty (0.142714) | |
| nca (0.136874) | |
| che (0.136314) | |
| pla (0.133672) | |
| ese (0.126502) | |
| bla (0.124347) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| med (0.116252) |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eru (0.360144) | |
| clu (0.358938) | |
| eje (0.296501) | |
| fce (0.271592) | |
| cty (0.20816) | |
| fli (0.202881) | |
| nbm (0.198649) | |
| fcc (0.197785) | |
| nep (0.183925) | |
| duo (0.172801) | |
| cut (0.169924) | |
| nje (0.16592) | |
| cje (0.165235) | |
| lin (0.145603) | |
| pty (0.142714) | |
| nca (0.136874) | |
| che (0.136314) | |
| pla (0.133672) | |
| ese (0.126502) | |
| bla (0.124347) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| med (0.116252) |