Ss1.1-Pig4-TMW8045N02.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCAGGCTGCCCGAGACTGAGCTGTTTCTGACAGGTGTTCCCCGGGATAGAGAAGCCAGCT ACCGACCTGGACCCCACCAGCACCATGGGCAGTGGCTGCCGCATCGAATGCATATTCTTC AGCGAGTTCCACCCCACGCTGGGACCCAAGATCACCTATCAGGTCCCGGAAGACTTCATC TCCCGGGAGCTGTTTGACACTGTCCAGGTGTACATCATCACCAAGCCAGAGCTGCAGAAC AAGCTCATCACTGTCACAGCCATGGAGAAGAAACTGATCGGCTGCCCTGTGTGCATTGAG CACAAGAAGTACAGCCGCAATGCCCTGCTCTTCAACCTAGGCTTTGTCTGTGATGCCCAG GCCAAGACCTGTGCCCTAGAGCCCATTGTCAAAAAGCTGGCTGGCTACCTGACCACACTG GAGCTAGAGAGCAGCTTCGTGTCCACGGAGGAGAGCAAGCAGAAGTTGGTGCCCATCATG ACTATCTTGCTGGAGGAGCTAAATGCTTCAGGCCGGTGCACTTTGCCCATCGATGAATCC AACACCATCCACTTGAAGGTCATTGAACAACGGCCTGATCCTCCTGTGGCCCAGGAATAT GATGTGCCTGTCTTTACCAAAGACAAGGAGGATTTCTTCAACTCGCAGTGGGACCTCACC ACACAACAGATCCTGCCCTACATTGATGGTTTCCGCCATGTCCAGAAGATTTCAGCTGAA GCAGATGTGGAGCTCAACCTGGTGCGCATCGCCATCCAGAACCTGCTGTACTATGGTGTT GTGACACTGGTGTCCATCCTCCAGTACTCCAATGTGTACTGCCCAACACCCAAGGTCCAG GACCTGGTAGATGACAAGACCCTGCAGGAGGCATGTCTATCCTACGTGACCAAGCAAGGG CACAAGAGGGCCAGTCTTCGGGATGTGTTCCAGCTGTACTGTAGTCTGAGCCCTGGCACC ACTGTGAGAGATCTCATTGGCCGCCACCCCCAACAGCTGCAGCACGTTGATGAACGGAAG CTGATCCAGTTCGGGCTTATGAAGAATCTCATCCGGAGACTGCAGAAGTATCCTGTGCGG GTGTCTCGGGAGGAGCGGAGCCACCCTGCCAGGCTTTATACGGGCTGCCACAGCTACGAT GAGATCTGCTGTAAAACAGGCATGAGCTACCAAGAGCTGGATGAACGGCTGGAAAACGAC CCCAACATCATCATCTGCTGGAAGTGAGGCTGATGGGAGCTAAACTAGGCACACGGCTAT GGCTGCTCTCTCCAGCTAAGCCCTGCCTGGTGCATGAGGAATAGAGCAGCAAACTAGGCC ATACGGTCTCAAGGTTGACCCCCATTTCTGTAAATAAAGTAATGTATTTCAACTTAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCAGGCTGCCCGAGACTGAGCTGTTTCTGACAGGTGTTCCCCGGGATAGAGAAGCCAGCT ACCGACCTGGACCCCACCAGCACCATGGGCAGTGGCTGCCGCATCGAATGCATATTCTTC AGCGAGTTCCACCCCACGCTGGGACCCAAGATCACCTATCAGGTCCCGGAAGACTTCATC TCCCGGGAGCTGTTTGACACTGTCCAGGTGTACATCATCACCAAGCCAGAGCTGCAGAAC AAGCTCATCACTGTCACAGCCATGGAGAAGAAACTGATCGGCTGCCCTGTGTGCATTGAG CACAAGAAGTACAGCCGCAATGCCCTGCTCTTCAACCTAGGCTTTGTCTGTGATGCCCAG GCCAAGACCTGTGCCCTAGAGCCCATTGTCAAAAAGCTGGCTGGCTACCTGACCACACTG GAGCTAGAGAGCAGCTTCGTGTCCACGGAGGAGAGCAAGCAGAAGTTGGTGCCCATCATG ACTATCTTGCTGGAGGAGCTAAATGCTTCAGGCCGGTGCACTTTGCCCATCGATGAATCC AACACCATCCACTTGAAGGTCATTGAACAACGGCCTGATCCTCCTGTGGCCCAGGAATAT GATGTGCCTGTCTTTACCAAAGACAAGGAGGATTTCTTCAACTCGCAGTGGGACCTCACC ACACAACAGATCCTGCCCTACATTGATGGTTTCCGCCATGTCCAGAAGATTTCAGCTGAA GCAGATGTGGAGCTCAACCTGGTGCGCATCGCCATCCAGAACCTGCTGTACTATGGTGTT GTGACACTGGTGTCCATCCTCCAGTACTCCAATGTGTACTGCCCAACACCCAAGGTCCAG GACCTGGTAGATGACAAGACCCTGCAGGAGGCATGTCTATCCTACGTGACCAAGCAAGGG CACAAGAGGGCCAGTCTTCGGGATGTGTTCCAGCTGTACTGTAGTCTGAGCCCTGGCACC ACTGTGAGAGATCTCATTGGCCGCCACCCCCAACAGCTGCAGCACGTTGATGAACGGAAG CTGATCCAGTTCGGGCTTATGAAGAATCTCATCCGGAGACTGCAGAAGTATCCTGTGCGG GTGTCTCGGGAGGAGCGGAGCCACCCTGCCAGGCTTTATACGGGCTGCCACAGCTACGAT GAGATCTGCTGTAAAACAGGCATGAGCTACCAAGAGCTGGATGAACGGCTGGAAAACGAC CCCAACATCATCATCTGCTGGAAGTGAGGCTGATGGGAGCTAAACTAGGCACACGGCTAT GGCTGCTCTCTCCAGCTAAGCCCTGCCTGGTGCATGAGGAATAGAGCAGCAAACTAGGCC ATACGGTCTCAAGGTTGACCCCCATTTCTGTAAATAAAGTAATGTATTTCAACTTAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 255-373, - strand, RNAz p=0.99037 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 255-373, - strand, RNAz p=0.99037 |
| Aligned organism(s): 62 entry(ies) | More info |
| Aligned organism(s): 62 entry(ies) | Help | Less info |
| 1-164, gnl|bosTau2|chr22 (38625610-38625445) | |
| 1-164, gnl|Hg17|chr3 (50363192-50363008) | |
| 1-164, gnl|Mm7|chr9 (107271724-107271903) | |
| 255-423, gnl|bosTau2|chr22 (38624722-38624554) | |
| 255-423, gnl|canFam2|chr20 (42006825-42006589) | |
| 255-423, gnl|danRer3|chrUn (21108434-21108610) | |
| 255-423, gnl|echTel1|scaffold_274637 (11303-11526) | |
| 255-423, gnl|fr1|chrUn (178167574-178167777) | |
| 255-423, gnl|galGal2|chr12 (1258568-1258768) | |
| 255-423, gnl|hg17|chr3 (50362096-50362305) | |
| 255-423, gnl|Hg17|chr3 (50362268-50362100) | |
| 255-423, gnl|loxAfr1|scaffold_33789 (12808-12588) | |
| 255-423, gnl|mm7|chr9 (107272790-107272561) | |
| 255-423, gnl|Mm7|chr9 (107272616-107272784) | |
| 255-423, gnl|monDom2|scaffold_5 (73917555-73917363) | |
| 255-423, gnl|oryCun1|scaffold_208515 (39758-39545) | |
| 255-423, gnl|panTro1|chr2 (51941259-51941468) | |
| 255-423, gnl|rheMac2|chr2 (86064859-86064650) | |
| 255-423, gnl|rn3|chr8 (112810090-112809876) | |
| 255-423, gnl|tetNig1|chr11 (4401218-4401012) | |
| 255-423, gnl|xenTro1|scaffold_189 (1561871-1561678) | |
| 532-669, gnl|bosTau2|chr22 (38623927-38623790) | |
| 532-669, gnl|canFam2|chr20 (42007692-42007543) | |
| 532-669, gnl|danRer3|chrUn (21107946-21108088) | |
| 532-669, gnl|dasNov1|scaffold_149973 (3381-3230) | |
| 532-669, gnl|echTel1|scaffold_274637 (10482-10632) | |
| 532-669, gnl|fr1|chrUn (178167032-178167181) | |
| 532-669, gnl|galGal2|chr12 (1257825-1257975) | |
| 532-669, gnl|hg17|chr3 (50361308-50361458) | |
| 532-669, gnl|Hg17|chr3 (50361446-50361309) | |
| 532-669, gnl|loxAfr1|scaffold_33789 (13595-13445) | |
| 532-669, gnl|mm7|chr9 (107273738-107273588) | |
| 532-669, gnl|Mm7|chr9 (107273598-107273735) | |
| 532-669, gnl|monDom2|scaffold_5 (73919331-73919181) | |
| 532-669, gnl|oryCun1|scaffold_208515 (40848-40698) | |
| 532-669, gnl|panTro1|chr2 (51940471-51940621) | |
| 532-669, gnl|rheMac2|chr2 (86065638-86065488) | |
| 532-669, gnl|rn3|chr8 (112810788-112810638) | |
| 532-669, gnl|tetNig1|chr11 (4401748-4401598) | |
| 532-669, gnl|xenTro1|scaffold_189 (1562383-1562236) | |
| 897-1017, gnl|bosTau2|chr22 (38623160-38623040) | |
| 897-1017, gnl|canFam2|chr20 (42008452-42008302) | |
| 897-1017, gnl|danRer3|chrUn (21100986-21101155) | |
| 897-1017, gnl|dasNov1|scaffold_149973 (4138-3988) | |
| 897-1017, gnl|echTel1|scaffold_274637 (9756-9907) | |
| 897-1017, gnl|fr1|chrUn (178165925-178166086) | |
| 897-1017, gnl|galGal2|chr12 (1257020-1257155) | |
| 897-1017, gnl|hg17|chr3 (50360551-50360701) | |
| 897-1017, gnl|Hg17|chr3 (50360678-50360558) | |
| 897-1017, gnl|loxAfr1|scaffold_33789 (14350-14200) | |
| 897-1017, gnl|mm7|chr9 (107274489-107274340) | |
| 897-1017, gnl|Mm7|chr9 (107274360-107274480) | |
| 897-1017, gnl|monDom2|scaffold_5 (73921081-73920943) | |
| 897-1017, gnl|oryCun1|scaffold_208515 (41568-41418) | |
| 897-1017, gnl|panTro1|chr2 (51939714-51939864) | |
| 897-1017, gnl|rheMac2|chr2 (86066394-86066244) | |
| 897-1017, gnl|rn3|chr8 (112811533-112811384) | |
| 897-1017, gnl|tetNig1|chr11 (4402551-4402394) | |
| 897-1017, gnl|xenTro1|scaffold_189 (1567820-1567690) | |
| 1156-1376, gnl|bosTau2|chr22 (38622543-38622323) | |
| 1156-1376, gnl|Hg17|chr3 (50360112-50359924) | |
| 1156-1376, gnl|Mm7|chr9 (107274935-107275149) |
| Aligned organism(s): 62 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-164, gnl|bosTau2|chr22 (38625610-38625445) | |
| 1-164, gnl|Hg17|chr3 (50363192-50363008) | |
| 1-164, gnl|Mm7|chr9 (107271724-107271903) | |
| 255-423, gnl|bosTau2|chr22 (38624722-38624554) | |
| 255-423, gnl|canFam2|chr20 (42006825-42006589) | |
| 255-423, gnl|danRer3|chrUn (21108434-21108610) | |
| 255-423, gnl|echTel1|scaffold_274637 (11303-11526) | |
| 255-423, gnl|fr1|chrUn (178167574-178167777) | |
| 255-423, gnl|galGal2|chr12 (1258568-1258768) | |
| 255-423, gnl|hg17|chr3 (50362096-50362305) | |
| 255-423, gnl|Hg17|chr3 (50362268-50362100) | |
| 255-423, gnl|loxAfr1|scaffold_33789 (12808-12588) | |
| 255-423, gnl|mm7|chr9 (107272790-107272561) | |
| 255-423, gnl|Mm7|chr9 (107272616-107272784) | |
| 255-423, gnl|monDom2|scaffold_5 (73917555-73917363) | |
| 255-423, gnl|oryCun1|scaffold_208515 (39758-39545) | |
| 255-423, gnl|panTro1|chr2 (51941259-51941468) | |
| 255-423, gnl|rheMac2|chr2 (86064859-86064650) | |
| 255-423, gnl|rn3|chr8 (112810090-112809876) | |
| 255-423, gnl|tetNig1|chr11 (4401218-4401012) | |
| 255-423, gnl|xenTro1|scaffold_189 (1561871-1561678) | |
| 532-669, gnl|bosTau2|chr22 (38623927-38623790) | |
| 532-669, gnl|canFam2|chr20 (42007692-42007543) | |
| 532-669, gnl|danRer3|chrUn (21107946-21108088) | |
| 532-669, gnl|dasNov1|scaffold_149973 (3381-3230) | |
| 532-669, gnl|echTel1|scaffold_274637 (10482-10632) | |
| 532-669, gnl|fr1|chrUn (178167032-178167181) | |
| 532-669, gnl|galGal2|chr12 (1257825-1257975) | |
| 532-669, gnl|hg17|chr3 (50361308-50361458) | |
| 532-669, gnl|Hg17|chr3 (50361446-50361309) | |
| 532-669, gnl|loxAfr1|scaffold_33789 (13595-13445) | |
| 532-669, gnl|mm7|chr9 (107273738-107273588) | |
| 532-669, gnl|Mm7|chr9 (107273598-107273735) | |
| 532-669, gnl|monDom2|scaffold_5 (73919331-73919181) | |
| 532-669, gnl|oryCun1|scaffold_208515 (40848-40698) | |
| 532-669, gnl|panTro1|chr2 (51940471-51940621) | |
| 532-669, gnl|rheMac2|chr2 (86065638-86065488) | |
| 532-669, gnl|rn3|chr8 (112810788-112810638) | |
| 532-669, gnl|tetNig1|chr11 (4401748-4401598) | |
| 532-669, gnl|xenTro1|scaffold_189 (1562383-1562236) | |
| 897-1017, gnl|bosTau2|chr22 (38623160-38623040) | |
| 897-1017, gnl|canFam2|chr20 (42008452-42008302) | |
| 897-1017, gnl|danRer3|chrUn (21100986-21101155) | |
| 897-1017, gnl|dasNov1|scaffold_149973 (4138-3988) | |
| 897-1017, gnl|echTel1|scaffold_274637 (9756-9907) | |
| 897-1017, gnl|fr1|chrUn (178165925-178166086) | |
| 897-1017, gnl|galGal2|chr12 (1257020-1257155) | |
| 897-1017, gnl|hg17|chr3 (50360551-50360701) | |
| 897-1017, gnl|Hg17|chr3 (50360678-50360558) | |
| 897-1017, gnl|loxAfr1|scaffold_33789 (14350-14200) | |
| 897-1017, gnl|mm7|chr9 (107274489-107274340) | |
| 897-1017, gnl|Mm7|chr9 (107274360-107274480) | |
| 897-1017, gnl|monDom2|scaffold_5 (73921081-73920943) | |
| 897-1017, gnl|oryCun1|scaffold_208515 (41568-41418) | |
| 897-1017, gnl|panTro1|chr2 (51939714-51939864) | |
| 897-1017, gnl|rheMac2|chr2 (86066394-86066244) | |
| 897-1017, gnl|rn3|chr8 (112811533-112811384) | |
| 897-1017, gnl|tetNig1|chr11 (4402551-4402394) | |
| 897-1017, gnl|xenTro1|scaffold_189 (1567820-1567690) | |
| 1156-1376, gnl|bosTau2|chr22 (38622543-38622323) | |
| 1156-1376, gnl|Hg17|chr3 (50360112-50359924) | |
| 1156-1376, gnl|Mm7|chr9 (107274935-107275149) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| amn (0.417711) | |
| cly (0.361925) | |
| ece (0.229305) | |
| mas (0.210305) | |
| tes (0.207814) | |
| fty (0.17584) | |
| cki (0.165235) | |
| cje (0.165235) | |
| lun (0.150489) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| cov (0.132153) | |
| pgl (0.118483) | |
| ldo (0.0970026) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.417711) | |
| cly (0.361925) | |
| ece (0.229305) | |
| mas (0.210305) | |
| tes (0.207814) | |
| fty (0.17584) | |
| cki (0.165235) | |
| cje (0.165235) | |
| lun (0.150489) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| cov (0.132153) | |
| pgl (0.118483) | |
| ldo (0.0970026) |