Non-Coding RNA Search

Ss1.1-Pig4-TMW8045N11.3.5

Sequence:


               
               GAGGTGGAGGCAGGCTGCGGCGGCGAGGGCGACAGCGGTGGCGGCGGCGCCATGGCAGGG
CTTGCAGGATCCCTGCTGCCTTGGTGATCCCGGGCTGACAGCCAGAAAGCACAGCAGCTC
AGCTCCTGGAGCGCGAGGGTTGAAGAAAGTGGTGGGCAGCCGCCTGCGCCCACCAGCTCC
CATTAGGTCGGTTCCTGCAGCGGTGCCCGGTGGCCTTGGCGAAGGCCCTGTCCGGCAGAG
ATCATGTATTGCCTCCAGTGGCTGCTGCCCGTCCTCCTCATCCCCAAGCCCCTCAACCCC
GCCCTGTGGTTCAGCCACTCCATGTTCATGGGCTTCTACCTGCTCAGCTTCCTCCTGGAA
CGGAAGCCTTGCACAATTTGTGCCTTGGTTTTCCTGGCAGCCCTGTTCCTCATCTGCTAT
AGCTGCTGGGGAAACTGTTTCCTGTACCACTGCTCCGATTCCCCGCTTCCAGAATCGGCA
CATGACCCCGGCGTTGTGGGCACCTAACAGCCAGCCCAGTTAGCTTTCCAAGGAAGCAGA
AGACGGGAGGGGAGGCACTGACCTAGGTCATAAAGCATTGGAGTTTCAAATCCCGCAGCC
CTGCGGGTGCCACATTCCTGACGGCGCCTTTTTGGCCTGTGATGTTTTATCCTTATAATG
TGAATAATGGCACTGACCAGTGCTTTCGTTGTAGAGTCCTGTAGTCGTGGGTGGTCTTGT
GGTTGTGTGTGTTCTGTCCCCATCTTGGCCCTTGGCTGGCAGGATGGCCACCCCCCTCGC
CTCATTCCTTCGAGGAGTCTGCACCCATCCTGGTCAGCCGCCCCAGCATGACCCGGGCAG
ATAAGATGCTATTCTCATTGTCACCTCTGTGACCCTTTCTTGTCAGGGGGTCCTTCCTTC
TCAGAATGTTTCTGACTCCGTCCCTCTCTTGGCTTCCTGTTAGTTTTCTTCTACCCCTTT
CCTTTTTGGGGGAGCACCTGTCCAAGACAGGGCTCGTTTTTTTGCACTTATCTCGAATTT
AAAGAGATTGCTGACGCCCGAGAGCCTCGCTTTTTCATCCTTTTTCCCGGCCAGCAGACT
GGACAGAAATGTGTCTTGACTGCTGTCCACAGATCTTCAGTATTCCCCTGCCCCACTTCA
TTTTGAAGAAAGAAGTAACAGATGCATGTTGCTCTTTCACCTGGGGGTCTGGGCTCCTGC
TCAGCAGCCCAGCTTCGCTTCCTTTGCCCTCCTCCTGCCTTTCTCAGCAGTCAGGGAGGT
GGGGGGGTGCGTTCTCTCTCCCATGCATGCTCTGCAGGATTGATGTGTGGTGTGTTTACG
TAGATCTAGCAGTCCCCAGCCGAGTGAATGGGAGAGTACTTGTGTGTTTCATAACAGCCA
TGATCCCCTTGATAGGTGTTTGGATATTTTTTGGTGTGGTGTGCCGTGCGTGCGTGTGTG
TGTGTAAACGTACGTGTACAAGTACGTGTGTGATATCCCTTTTAAAGAAGCTTTATCGAG
CGTGTTCTGATTTTGAGGTGTGGCAATAGCTAGCTATAGTAGGTGCCGCTCCAGTTTTTA
TTTAGCATGGGGATTGCAGAGTGACCAGCACGCTGGACTCCGAGGTGGTTCAGACGAAAC
AGAGGGGAGCAGTGGCCATCGTCCTCGTGCCAGGAGCTTCTCCAGTCCTGCGCGTATAGA
CTGTACGTTGTGAAGAATGCACAGGAAGACTTTGTGACTGTCACTTGCTTTTTTTCTTTT
TCTGCGCTTCAGTAAAAGAGTTGGCAAACGAGACTGTCTCCTGGCCCCTGCCCCCTGGGG
ATCAGCATGACTGTCCTTCCAGTCTAAACCATCCGTCTTTCTCTTGCCTGAAGGGGGAGG
GAGGTGGGCCAGGCAGAGGACAGACCTGGAGGCAGTCCATCTAGGGAATGGGCCCGTGAG
GCCACACTCGTGGAACATTTGGATTGCTATTCTGGAGCTTTTATTTCTGGTGTGTTCGTT
GCACAGCTGTTTGAAATGTTTAATAAAGCTTTATAAACTTTAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGTGGAGGCAGGCTGCGGCGGCGAGGGCGACAGCGGTGGCGGCGGCGCCATGGCAGGG
CTTGCAGGATCCCTGCTGCCTTGGTGATCCCGGGCTGACAGCCAGAAAGCACAGCAGCTC
AGCTCCTGGAGCGCGAGGGTTGAAGAAAGTGGTGGGCAGCCGCCTGCGCCCACCAGCTCC
CATTAGGTCGGTTCCTGCAGCGGTGCCCGGTGGCCTTGGCGAAGGCCCTGTCCGGCAGAG
ATCATGTATTGCCTCCAGTGGCTGCTGCCCGTCCTCCTCATCCCCAAGCCCCTCAACCCC
GCCCTGTGGTTCAGCCACTCCATGTTCATGGGCTTCTACCTGCTCAGCTTCCTCCTGGAA
CGGAAGCCTTGCACAATTTGTGCCTTGGTTTTCCTGGCAGCCCTGTTCCTCATCTGCTAT
AGCTGCTGGGGAAACTGTTTCCTGTACCACTGCTCCGATTCCCCGCTTCCAGAATCGGCA
CATGACCCCGGCGTTGTGGGCACCTAACAGCCAGCCCAGTTAGCTTTCCAAGGAAGCAGA
AGACGGGAGGGGAGGCACTGACCTAGGTCATAAAGCATTGGAGTTTCAAATCCCGCAGCC
CTGCGGGTGCCACATTCCTGACGGCGCCTTTTTGGCCTGTGATGTTTTATCCTTATAATG
TGAATAATGGCACTGACCAGTGCTTTCGTTGTAGAGTCCTGTAGTCGTGGGTGGTCTTGT
GGTTGTGTGTGTTCTGTCCCCATCTTGGCCCTTGGCTGGCAGGATGGCCACCCCCCTCGC
CTCATTCCTTCGAGGAGTCTGCACCCATCCTGGTCAGCCGCCCCAGCATGACCCGGGCAG
ATAAGATGCTATTCTCATTGTCACCTCTGTGACCCTTTCTTGTCAGGGGGTCCTTCCTTC
TCAGAATGTTTCTGACTCCGTCCCTCTCTTGGCTTCCTGTTAGTTTTCTTCTACCCCTTT
CCTTTTTGGGGGAGCACCTGTCCAAGACAGGGCTCGTTTTTTTGCACTTATCTCGAATTT
AAAGAGATTGCTGACGCCCGAGAGCCTCGCTTTTTCATCCTTTTTCCCGGCCAGCAGACT
GGACAGAAATGTGTCTTGACTGCTGTCCACAGATCTTCAGTATTCCCCTGCCCCACTTCA
TTTTGAAGAAAGAAGTAACAGATGCATGTTGCTCTTTCACCTGGGGGTCTGGGCTCCTGC
TCAGCAGCCCAGCTTCGCTTCCTTTGCCCTCCTCCTGCCTTTCTCAGCAGTCAGGGAGGT
GGGGGGGTGCGTTCTCTCTCCCATGCATGCTCTGCAGGATTGATGTGTGGTGTGTTTACG
TAGATCTAGCAGTCCCCAGCCGAGTGAATGGGAGAGTACTTGTGTGTTTCATAACAGCCA
TGATCCCCTTGATAGGTGTTTGGATATTTTTTGGTGTGGTGTGCCGTGCGTGCGTGTGTG
TGTGTAAACGTACGTGTACAAGTACGTGTGTGATATCCCTTTTAAAGAAGCTTTATCGAG
CGTGTTCTGATTTTGAGGTGTGGCAATAGCTAGCTATAGTAGGTGCCGCTCCAGTTTTTA
TTTAGCATGGGGATTGCAGAGTGACCAGCACGCTGGACTCCGAGGTGGTTCAGACGAAAC
AGAGGGGAGCAGTGGCCATCGTCCTCGTGCCAGGAGCTTCTCCAGTCCTGCGCGTATAGA
CTGTACGTTGTGAAGAATGCACAGGAAGACTTTGTGACTGTCACTTGCTTTTTTTCTTTT
TCTGCGCTTCAGTAAAAGAGTTGGCAAACGAGACTGTCTCCTGGCCCCTGCCCCCTGGGG
ATCAGCATGACTGTCCTTCCAGTCTAAACCATCCGTCTTTCTCTTGCCTGAAGGGGGAGG
GAGGTGGGCCAGGCAGAGGACAGACCTGGAGGCAGTCCATCTAGGGAATGGGCCCGTGAG
GCCACACTCGTGGAACATTTGGATTGCTATTCTGGAGCTTTTATTTCTGGTGTGTTCGTT
GCACAGCTGTTTGAAATGTTTAATAAAGCTTTATAAACTTTAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|20072484|gb|AAH26935.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|20072484|gb|AAH26935.1|

Predicted RNA structure(s): 5 entry(ies)

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Predicted RNA structure(s): 5 entry(ies)

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               304-503, - strand, RNAz p=0.99004
               

               
               743-861, - strand, RNAz p=0.723218
               

               
               902-1057, - strand, RNAz p=0.998679
               

               
               1132-1249, + strand, RNAz p=0.999306
               

               
               1759-1911, - strand, RNAz p=0.972061

Predicted RNA structure(s): 5 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               304-503, - strand, RNAz p=0.99004
               

               
               743-861, - strand, RNAz p=0.723218
               

               
               902-1057, - strand, RNAz p=0.998679
               

               
               1132-1249, + strand, RNAz p=0.999306
               

               
               1759-1911, - strand, RNAz p=0.972061

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_006698, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_006698, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               65-2022, gnl|bosTau2|chr13 (49214305-49216224)
               

               
               65-2022, gnl|Hg17|chr20 (35581169-35579233)
               

               
               65-2022, gnl|Mm7|chr2 (157299220-157297252)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               65-2022, gnl|bosTau2|chr13 (49214305-49216224)
               

               
               65-2022, gnl|Hg17|chr20 (35581169-35579233)
               

               
               65-2022, gnl|Mm7|chr2 (157299220-157297252)

Expressed library(ies): 31 entry(ies)

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Expressed library(ies): 31 entry(ies)

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               fcc (0.593354)
               

               
               pgl (0.592417)
               

               
               mas (0.42061)
               

               
               nep (0.36785)
               

               
               cut (0.339847)
               

               
               hlv (0.278513)
               

               
               cbe (0.239234)
               

               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               hea (0.204499)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 31 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.593354)
               

               
               pgl (0.592417)
               

               
               mas (0.42061)
               

               
               nep (0.36785)
               

               
               cut (0.339847)
               

               
               hlv (0.278513)
               

               
               cbe (0.239234)
               

               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               hea (0.204499)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	304-503, - strand, RNAz p=0.99004
	743-861, - strand, RNAz p=0.723218
	902-1057, - strand, RNAz p=0.998679
	1132-1249, + strand, RNAz p=0.999306
	1759-1911, - strand, RNAz p=0.972061

	65-2022, gnl\|bosTau2\|chr13 (49214305-49216224)
	65-2022, gnl\|Hg17\|chr20 (35581169-35579233)
	65-2022, gnl\|Mm7\|chr2 (157299220-157297252)

	fcc (0.593354)
	pgl (0.592417)
	mas (0.42061)
	nep (0.36785)
	cut (0.339847)
	hlv (0.278513)
	cbe (0.239234)
	ebs (0.236602)
	ece (0.229305)
	hea (0.204499)
	fbs (0.175346)
	sin (0.174948)
	eye (0.170503)
	fhi (0.169578)
	nje (0.16592)
	cki (0.165235)
	lun (0.150489)
	bfe (0.149858)
	fat (0.147427)
	hyp (0.142837)
	cst (0.140036)
	ssp (0.13552)
	ste (0.135208)
	pla (0.133672)
	cov (0.132153)
	sug (0.127291)
	bla (0.124347)
	ecc (0.115035)
	jej (0.0989218)
	eje (0.0988338)
	ldo (0.0970026)