Non-Coding RNA Search

Ss1.1-Pig4-TMW8045N12.5

Sequence:


               
               CTTCTAATCAGCATCCGTGGCCATATGAAAGCTTGAAGGCAACTCAGTGACATATCTTGC
TCAGTAGTTTCTTATTCCTGAAGAACCACAAACCTAAAGTGAGGCCTCAGTGCTGGTGCT
CTTGGAGTATGGGGAATGTGCAAATATTTAACTGTTTTGTCTGCTGCACATTGCAGATCT
GCTCATGTGCATTCTCCGTTTGTCTTCCTTTGTCCTATGTGTTTTTGCTTTTCGGAAAGT
GCAGTCTTTATTGTACCCTTCTCCGGCTTGTAGTGCATTAGAATGCCTAGCATTTATGTT
CATTCATTATTGTATTTGCCATGTAAAATTTTTTATTACCTTAGACAAGCTTACAAGCTG
TTACTACATAACTTATCTTACTGTAACTCTTTTATTTCCCGACATTGTAATTTGTTTGTG
ATGTATATTGTGAGATTGTATTCTATGTTAATTTAATCAGCACAATTCACTGACATGCTG
GACTGACATGCTGGCTGCTGTTTCGAAGTGTAAAGTTTGTGTAGGGCTGTTGGGACAACT
GCAACTCTGTTGTCAAGGTACTGTGCTGGTTCCTCTAGCAACACCACGGGTGTGGCCCTT
GGGACGCTGAGGGCATTTACAACACCCTTGAGCAAATTTTAACTGCAGATTTTCTTTGTA
GAAATTCTATGTATAACGCAGGTACCTACTTGGCCCATGGCTGGTAACTATTTGGGCAAT
TAGAAAAAAAAAAAACATACAAACACCTAGGGTCTATGGCTGCTTTAAATATGTTGGAAA
GTCTGAAAATGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCTAATCAGCATCCGTGGCCATATGAAAGCTTGAAGGCAACTCAGTGACATATCTTGC
TCAGTAGTTTCTTATTCCTGAAGAACCACAAACCTAAAGTGAGGCCTCAGTGCTGGTGCT
CTTGGAGTATGGGGAATGTGCAAATATTTAACTGTTTTGTCTGCTGCACATTGCAGATCT
GCTCATGTGCATTCTCCGTTTGTCTTCCTTTGTCCTATGTGTTTTTGCTTTTCGGAAAGT
GCAGTCTTTATTGTACCCTTCTCCGGCTTGTAGTGCATTAGAATGCCTAGCATTTATGTT
CATTCATTATTGTATTTGCCATGTAAAATTTTTTATTACCTTAGACAAGCTTACAAGCTG
TTACTACATAACTTATCTTACTGTAACTCTTTTATTTCCCGACATTGTAATTTGTTTGTG
ATGTATATTGTGAGATTGTATTCTATGTTAATTTAATCAGCACAATTCACTGACATGCTG
GACTGACATGCTGGCTGCTGTTTCGAAGTGTAAAGTTTGTGTAGGGCTGTTGGGACAACT
GCAACTCTGTTGTCAAGGTACTGTGCTGGTTCCTCTAGCAACACCACGGGTGTGGCCCTT
GGGACGCTGAGGGCATTTACAACACCCTTGAGCAAATTTTAACTGCAGATTTTCTTTGTA
GAAATTCTATGTATAACGCAGGTACCTACTTGGCCCATGGCTGGTAACTATTTGGGCAAT
TAGAAAAAAAAAAAACATACAAACACCTAGGGTCTATGGCTGCTTTAAATATGTTGGAAA
GTCTGAAAATGT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               79-232, - strand, RNAz p=0.657382
               

               
               547-704, - strand, RNAz p=0.791048

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               79-232, - strand, RNAz p=0.657382
               

               
               547-704, - strand, RNAz p=0.791048

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               1-788, gnl|bosTau2|chr15 (24198314-24199108)
               

               
               1-788, gnl|canFam2|chr21 (41922597-41923291)
               

               
               1-788, gnl|danRer3|chr7 (18158344-18157676)
               

               
               1-788, gnl|dasNov1|scaffold_267445 (731-4)
               

               
               1-788, gnl|fr1|chrUn (51627888-51628552)
               

               
               1-788, gnl|galGal2|chr5 (8699823-8700527)
               

               
               1-788, gnl|hg17|chr11 (15945085-15945794)
               

               
               1-788, gnl|Hg17|chr11 (15945980-15945191)
               

               
               1-788, gnl|loxAfr1|scaffold_1315 (103352-102636)
               

               
               1-788, gnl|mm7|chr7 (111387524-111388241)
               

               
               1-788, gnl|Mm7|chr7 (111388409-111387629)
               

               
               1-788, gnl|monDom2|scaffold_10 (56002139-56001387)
               

               
               1-788, gnl|oryCun1|scaffold_173287 (56076-56777)
               

               
               1-788, gnl|panTro1|chr9 (16154260-16154971)
               

               
               1-788, gnl|rheMac2|chr14 (55971240-55970530)
               

               
               1-788, gnl|rn3|chr1 (173690833-173691545)
               

               
               1-788, gnl|tetNig1|chr5 (6780936-6781603)
               

               
               1-788, gnl|xenTro1|scaffold_705 (550656-549903)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-788, gnl|bosTau2|chr15 (24198314-24199108)
               

               
               1-788, gnl|canFam2|chr21 (41922597-41923291)
               

               
               1-788, gnl|danRer3|chr7 (18158344-18157676)
               

               
               1-788, gnl|dasNov1|scaffold_267445 (731-4)
               

               
               1-788, gnl|fr1|chrUn (51627888-51628552)
               

               
               1-788, gnl|galGal2|chr5 (8699823-8700527)
               

               
               1-788, gnl|hg17|chr11 (15945085-15945794)
               

               
               1-788, gnl|Hg17|chr11 (15945980-15945191)
               

               
               1-788, gnl|loxAfr1|scaffold_1315 (103352-102636)
               

               
               1-788, gnl|mm7|chr7 (111387524-111388241)
               

               
               1-788, gnl|Mm7|chr7 (111388409-111387629)
               

               
               1-788, gnl|monDom2|scaffold_10 (56002139-56001387)
               

               
               1-788, gnl|oryCun1|scaffold_173287 (56076-56777)
               

               
               1-788, gnl|panTro1|chr9 (16154260-16154971)
               

               
               1-788, gnl|rheMac2|chr14 (55971240-55970530)
               

               
               1-788, gnl|rn3|chr1 (173690833-173691545)
               

               
               1-788, gnl|tetNig1|chr5 (6780936-6781603)
               

               
               1-788, gnl|xenTro1|scaffold_705 (550656-549903)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

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               mgp (0.230681)
               

               
               sin (0.174948)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               ldo (0.0970026)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.230681)
               

               
               sin (0.174948)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               ldo (0.0970026)

	79-232, - strand, RNAz p=0.657382
	547-704, - strand, RNAz p=0.791048

	1-788, gnl\|bosTau2\|chr15 (24198314-24199108)
	1-788, gnl\|canFam2\|chr21 (41922597-41923291)
	1-788, gnl\|danRer3\|chr7 (18158344-18157676)
	1-788, gnl\|dasNov1\|scaffold_267445 (731-4)
	1-788, gnl\|fr1\|chrUn (51627888-51628552)
	1-788, gnl\|galGal2\|chr5 (8699823-8700527)
	1-788, gnl\|hg17\|chr11 (15945085-15945794)
	1-788, gnl\|Hg17\|chr11 (15945980-15945191)
	1-788, gnl\|loxAfr1\|scaffold_1315 (103352-102636)
	1-788, gnl\|mm7\|chr7 (111387524-111388241)
	1-788, gnl\|Mm7\|chr7 (111388409-111387629)
	1-788, gnl\|monDom2\|scaffold_10 (56002139-56001387)
	1-788, gnl\|oryCun1\|scaffold_173287 (56076-56777)
	1-788, gnl\|panTro1\|chr9 (16154260-16154971)
	1-788, gnl\|rheMac2\|chr14 (55971240-55970530)
	1-788, gnl\|rn3\|chr1 (173690833-173691545)
	1-788, gnl\|tetNig1\|chr5 (6780936-6781603)
	1-788, gnl\|xenTro1\|scaffold_705 (550656-549903)

	mgp (0.230681)
	sin (0.174948)
	kid (0.129735)
	sug (0.127291)
	ese (0.126502)
	bla (0.124347)
	ldo (0.0970026)