Ss1.1-Pig4-TMW8045N13.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGGGTCCAGCCGCCAGGAGTCTGTGGAGAGGCTGTGCCCGTCCGGTCGCTGCCCGAGGG CTGGCGTGGGAGCTCGTCGGCCTTGGAAGAGCCTCGGTCTGAGTGTGACCTCCTGCCACC CCTTCTCAGGATCACCCAGACCTGGACACACGGTCCACCCGCCTCCGGCAGGCGTCCACC TCACCACCACCTCTTCTCCTCGTGAACCGTCGAAGAGCTGTGATGAAGTCGGGCAGCGTC CAGCCCGCAGTAGCTGCAGCAGGCCAGACGGTTTCGAACATCCCTACCGGGCGGCGCCTC ACAATCGATGACTTTGAAATCGGGCGTCCTCTGGGCAAGGGTAAATTTGGAAATGTGTAT TTGGCTCGGCTCAAGGAGAGCCATTTCATCGTGGCCCTGAAGGTGCTCTTCAAGTCCCAG ATAGAGAAGGAAGGACTGGAACACCAGCTGCGCAGAGAAATTGAAATCCAGGCGCACCTA CAGCACCCCAATATCCTTCGCCTGTACAACTACTTCCACGATGCCCGCAGGGTGTACTTG ATTCTAGAATATGCTCCAAGGGGGGAGCTCTACAAGGAGCTGCAGAAGAGCCACACGCTG GATGAACAGCGGACAGCCACGATAATGGAGGAGCTGGCAGATGCCCTGACCTACTGCCAT GAAAAGAAGGTGATTCACAGGGACATTAAGCCGGAGAACCTGTTGTTGGGGTTCCGGGGT GAGGTGAAGATTGCAGACTTTGGCTGGTCGGTACACACTCCCTCTCTGAGGAGAAAGACA ATGTGTGGGACCCTGGACTACTTGCCCCCAGAGATGATCGAGGGGAGAACGTACAATGAG AAGGTGGATCTGTGGTGCATTGGGGTGCTCTGCTACGAGCTGCTGGTGGGAAATCCTCCC TTTGAGAGCGCCTCCCATAACGAGACCTACAGACGCATCCTCAAGGTAGATGTAAGGTTT CCCCCATCCCTGCCTTTGGGGGCTCAGGACTTGATCTCCAGGCTTCTCAGATACCAGCCT TCGGATCGGCTGCCCTTGGACCAGATCCTGGAGCACCCCTGGGTCCGGGCCCACTCCCGG AGGGTGCTGCCTCCAAGTACTCAAATGGTCTCCTGAGCCCTGTCCACACCTCTTCCTTTG ATTGTCCATGGAGCACCCCTGGCTCTGGTATCTCATCTGTCTTGTGTTTCTTCTCTTTTA AGATGCATCATGCTAATTAATAAAAACGGAATCACTAGCAACAGGGATCCAAGCCGAGTC TGCGACCTACACCACAGTTCCTGGCAACACTGGATCCCCACCCGCTGAGCCAGGCCTGGG AGCCAACCCACATCCTCAAGGATACTAGTCTGATGCCTTTGCGCTGCACCACAACAGGAA CTCCTATTCTCATTCTTTTGTTAGTCTCGTCCAGCATTATGACTTGAAATAACAGGGCAC GCTATCAACTCCCTAGTTTTCAAAACCAGGCAGGAACTCTCTGTCAAAGGTCAGACATGA GTTGAGTAAATA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGGGTCCAGCCGCCAGGAGTCTGTGGAGAGGCTGTGCCCGTCCGGTCGCTGCCCGAGGG CTGGCGTGGGAGCTCGTCGGCCTTGGAAGAGCCTCGGTCTGAGTGTGACCTCCTGCCACC CCTTCTCAGGATCACCCAGACCTGGACACACGGTCCACCCGCCTCCGGCAGGCGTCCACC TCACCACCACCTCTTCTCCTCGTGAACCGTCGAAGAGCTGTGATGAAGTCGGGCAGCGTC CAGCCCGCAGTAGCTGCAGCAGGCCAGACGGTTTCGAACATCCCTACCGGGCGGCGCCTC ACAATCGATGACTTTGAAATCGGGCGTCCTCTGGGCAAGGGTAAATTTGGAAATGTGTAT TTGGCTCGGCTCAAGGAGAGCCATTTCATCGTGGCCCTGAAGGTGCTCTTCAAGTCCCAG ATAGAGAAGGAAGGACTGGAACACCAGCTGCGCAGAGAAATTGAAATCCAGGCGCACCTA CAGCACCCCAATATCCTTCGCCTGTACAACTACTTCCACGATGCCCGCAGGGTGTACTTG ATTCTAGAATATGCTCCAAGGGGGGAGCTCTACAAGGAGCTGCAGAAGAGCCACACGCTG GATGAACAGCGGACAGCCACGATAATGGAGGAGCTGGCAGATGCCCTGACCTACTGCCAT GAAAAGAAGGTGATTCACAGGGACATTAAGCCGGAGAACCTGTTGTTGGGGTTCCGGGGT GAGGTGAAGATTGCAGACTTTGGCTGGTCGGTACACACTCCCTCTCTGAGGAGAAAGACA ATGTGTGGGACCCTGGACTACTTGCCCCCAGAGATGATCGAGGGGAGAACGTACAATGAG AAGGTGGATCTGTGGTGCATTGGGGTGCTCTGCTACGAGCTGCTGGTGGGAAATCCTCCC TTTGAGAGCGCCTCCCATAACGAGACCTACAGACGCATCCTCAAGGTAGATGTAAGGTTT CCCCCATCCCTGCCTTTGGGGGCTCAGGACTTGATCTCCAGGCTTCTCAGATACCAGCCT TCGGATCGGCTGCCCTTGGACCAGATCCTGGAGCACCCCTGGGTCCGGGCCCACTCCCGG AGGGTGCTGCCTCCAAGTACTCAAATGGTCTCCTGAGCCCTGTCCACACCTCTTCCTTTG ATTGTCCATGGAGCACCCCTGGCTCTGGTATCTCATCTGTCTTGTGTTTCTTCTCTTTTA AGATGCATCATGCTAATTAATAAAAACGGAATCACTAGCAACAGGGATCCAAGCCGAGTC TGCGACCTACACCACAGTTCCTGGCAACACTGGATCCCCACCCGCTGAGCCAGGCCTGGG AGCCAACCCACATCCTCAAGGATACTAGTCTGATGCCTTTGCGCTGCACCACAACAGGAA CTCCTATTCTCATTCTTTTGTTAGTCTCGTCCAGCATTATGACTTGAAATAACAGGGCAC GCTATCAACTCCCTAGTTTTCAAAACCAGGCAGGAACTCTCTGTCAAAGGTCAGACATGA GTTGAGTAAATA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 62 entry(ies) | More info |
| Aligned organism(s): 62 entry(ies) | Help | Less info |
| 283-483, gnl|bosTau2|chr18 (53655244-53655044) | |
| 283-483, gnl|Hg17|chr19 (62435205-62435405) | |
| 283-483, gnl|Mm7|chr7 (9785796-9785996) | |
| 484-641, gnl|bosTau2|chr18 (49216100-49216256) | |
| 484-641, gnl|Hg17|chr19 (62435723-62435877) | |
| 484-641, gnl|Mm7|chr7 (9886576-9886728) | |
| 700-1223, gnl|bosTau2|chr24 (4676082-4676602) | |
| 700-1223, gnl|Hg17|chr19 (62436718-62438707) | |
| 700-1223, gnl|Mm7|chr4 (44766529-44765983) | |
| 763-947, gnl|bosTau2|chr18 (49217692-49217875) | |
| 763-947, gnl|Hg17|chr19 (62438057-62438240) | |
| 763-947, gnl|Mm7|chr7 (9891030-9891213) | |
| 769-938, gnl|bosTau2|chr13 (40907007-40907176) | |
| 769-938, gnl|canFam2|chr21 (7437688-7437863) | |
| 769-938, gnl|canFam2|chr24 (44567321-44567143) | |
| 769-938, gnl|canFam2|chr24 (44567140-44567335) | |
| 769-938, gnl|danRer3|chrNA (52612254-52612079) | |
| 769-938, gnl|danRer3|chrNA (52612076-52612257) | |
| 769-938, gnl|danRer3|chrNA (52612257-52612075) | |
| 769-938, gnl|dasNov1|scaffold_1805 (149308-149133) | |
| 769-938, gnl|dasNov1|scaffold_1805 (149130-149327) | |
| 769-938, gnl|dasNov1|scaffold_1805 (149311-149116) | |
| 769-938, gnl|echTel1|scaffold_304397 (8744-8917) | |
| 769-938, gnl|echTel1|scaffold_304397 (8920-8740) | |
| 769-938, gnl|echTel1|scaffold_304397 (8744-8922) | |
| 769-938, gnl|fr1|chrUn (44575935-44575760) | |
| 769-938, gnl|fr1|chrUn (44575757-44575938) | |
| 769-938, gnl|fr1|chrUn (44575938-44575754) | |
| 769-938, gnl|galGal2|chr20 (11545363-11545188) | |
| 769-938, gnl|galGal2|chr20 (11545363-11545183) | |
| 769-938, gnl|hg17|chr1 (216828625-216828800) | |
| 769-938, gnl|hg17|chr10 (115995778-115995982) | |
| 769-938, gnl|hg17|chr20 (54378944-54379139) | |
| 769-938, gnl|Hg17|chr20 (54379124-54378955) | |
| 769-938, gnl|loxAfr1|scaffold_47239 (9711-9535) | |
| 769-938, gnl|loxAfr1|scaffold_47239 (9532-9727) | |
| 769-938, gnl|loxAfr1|scaffold_47239 (9714-9518) | |
| 769-938, gnl|mm7|chr14 (16649903-16649740) | |
| 769-938, gnl|mm7|chr2 (172149912-172149734) | |
| 769-938, gnl|mm7|chr2 (172149731-172149925) | |
| 769-938, gnl|Mm7|chr2 (172149911-172149742) | |
| 769-938, gnl|monDom2|scaffold_1 (169621294-169621469) | |
| 769-938, gnl|monDom2|scaffold_1 (169621472-169621294) | |
| 769-938, gnl|monDom2|scaffold_1 (169621291-169621486) | |
| 769-938, gnl|oryCun1|scaffold_131402 (1442-1266) | |
| 769-938, gnl|oryCun1|scaffold_211767 (11776-11951) | |
| 769-938, gnl|oryCun1|scaffold_211767 (11773-11963) | |
| 769-938, gnl|panTro1|chr1 (200560521-200560696) | |
| 769-938, gnl|panTro1|chr21 (57296623-57296818) | |
| 769-938, gnl|panTro1|chr8 (118158745-118158949) | |
| 769-938, gnl|rheMac2|chr1 (150096055-150095880) | |
| 769-938, gnl|rheMac2|chr10 (8176038-8175845) | |
| 769-938, gnl|rheMac2|chr9 (113906566-113906767) | |
| 769-938, gnl|rn3|chr10 (1447922-1448107) | |
| 769-938, gnl|rn3|chr10 (450449-450633) | |
| 769-938, gnl|rn3|chr3 (163177942-163178135) | |
| 769-938, gnl|tetNig1|chr11 (2996722-2996897) | |
| 769-938, gnl|tetNig1|chr11 (2996900-2996719) | |
| 769-938, gnl|tetNig1|chr11 (2996719-2996903) | |
| 769-938, gnl|xenTro1|scaffold_1157 (194113-193938) | |
| 769-938, gnl|xenTro1|scaffold_1157 (193935-194113) | |
| 769-938, gnl|xenTro1|scaffold_1157 (194113-193930) |
| Aligned organism(s): 62 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 283-483, gnl|bosTau2|chr18 (53655244-53655044) | |
| 283-483, gnl|Hg17|chr19 (62435205-62435405) | |
| 283-483, gnl|Mm7|chr7 (9785796-9785996) | |
| 484-641, gnl|bosTau2|chr18 (49216100-49216256) | |
| 484-641, gnl|Hg17|chr19 (62435723-62435877) | |
| 484-641, gnl|Mm7|chr7 (9886576-9886728) | |
| 700-1223, gnl|bosTau2|chr24 (4676082-4676602) | |
| 700-1223, gnl|Hg17|chr19 (62436718-62438707) | |
| 700-1223, gnl|Mm7|chr4 (44766529-44765983) | |
| 763-947, gnl|bosTau2|chr18 (49217692-49217875) | |
| 763-947, gnl|Hg17|chr19 (62438057-62438240) | |
| 763-947, gnl|Mm7|chr7 (9891030-9891213) | |
| 769-938, gnl|bosTau2|chr13 (40907007-40907176) | |
| 769-938, gnl|canFam2|chr21 (7437688-7437863) | |
| 769-938, gnl|canFam2|chr24 (44567321-44567143) | |
| 769-938, gnl|canFam2|chr24 (44567140-44567335) | |
| 769-938, gnl|danRer3|chrNA (52612254-52612079) | |
| 769-938, gnl|danRer3|chrNA (52612076-52612257) | |
| 769-938, gnl|danRer3|chrNA (52612257-52612075) | |
| 769-938, gnl|dasNov1|scaffold_1805 (149308-149133) | |
| 769-938, gnl|dasNov1|scaffold_1805 (149130-149327) | |
| 769-938, gnl|dasNov1|scaffold_1805 (149311-149116) | |
| 769-938, gnl|echTel1|scaffold_304397 (8744-8917) | |
| 769-938, gnl|echTel1|scaffold_304397 (8920-8740) | |
| 769-938, gnl|echTel1|scaffold_304397 (8744-8922) | |
| 769-938, gnl|fr1|chrUn (44575935-44575760) | |
| 769-938, gnl|fr1|chrUn (44575757-44575938) | |
| 769-938, gnl|fr1|chrUn (44575938-44575754) | |
| 769-938, gnl|galGal2|chr20 (11545363-11545188) | |
| 769-938, gnl|galGal2|chr20 (11545363-11545183) | |
| 769-938, gnl|hg17|chr1 (216828625-216828800) | |
| 769-938, gnl|hg17|chr10 (115995778-115995982) | |
| 769-938, gnl|hg17|chr20 (54378944-54379139) | |
| 769-938, gnl|Hg17|chr20 (54379124-54378955) | |
| 769-938, gnl|loxAfr1|scaffold_47239 (9711-9535) | |
| 769-938, gnl|loxAfr1|scaffold_47239 (9532-9727) | |
| 769-938, gnl|loxAfr1|scaffold_47239 (9714-9518) | |
| 769-938, gnl|mm7|chr14 (16649903-16649740) | |
| 769-938, gnl|mm7|chr2 (172149912-172149734) | |
| 769-938, gnl|mm7|chr2 (172149731-172149925) | |
| 769-938, gnl|Mm7|chr2 (172149911-172149742) | |
| 769-938, gnl|monDom2|scaffold_1 (169621294-169621469) | |
| 769-938, gnl|monDom2|scaffold_1 (169621472-169621294) | |
| 769-938, gnl|monDom2|scaffold_1 (169621291-169621486) | |
| 769-938, gnl|oryCun1|scaffold_131402 (1442-1266) | |
| 769-938, gnl|oryCun1|scaffold_211767 (11776-11951) | |
| 769-938, gnl|oryCun1|scaffold_211767 (11773-11963) | |
| 769-938, gnl|panTro1|chr1 (200560521-200560696) | |
| 769-938, gnl|panTro1|chr21 (57296623-57296818) | |
| 769-938, gnl|panTro1|chr8 (118158745-118158949) | |
| 769-938, gnl|rheMac2|chr1 (150096055-150095880) | |
| 769-938, gnl|rheMac2|chr10 (8176038-8175845) | |
| 769-938, gnl|rheMac2|chr9 (113906566-113906767) | |
| 769-938, gnl|rn3|chr10 (1447922-1448107) | |
| 769-938, gnl|rn3|chr10 (450449-450633) | |
| 769-938, gnl|rn3|chr3 (163177942-163178135) | |
| 769-938, gnl|tetNig1|chr11 (2996722-2996897) | |
| 769-938, gnl|tetNig1|chr11 (2996900-2996719) | |
| 769-938, gnl|tetNig1|chr11 (2996719-2996903) | |
| 769-938, gnl|xenTro1|scaffold_1157 (194113-193938) | |
| 769-938, gnl|xenTro1|scaffold_1157 (193935-194113) | |
| 769-938, gnl|xenTro1|scaffold_1157 (194113-193930) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ese (0.126502) | |
| eep (0.122564) | |
| eru (0.120048) |