Ss1.1-Pig4-TMW8045N14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGAAGCCCTTAAGGAGTATGAGCCTGAAATGGGCAAAGTGTATCGACAGGACAGGAAGAG TGTACAACGAATTAAAGCTAAAGACATAGTTCCTGGTGATATTGTAGAAATTGCTGTTGG TGACAAAGTTCCTGCTGATATAAGATTAACGTCCATCAAATCTACTACTCTAAGAGTTGA CCAGTCAATTCTCACAGGTGAGTCTGTCTCTGTCATCAAGCACACCGACCCTGTCCCTGA CCCACGGGCTGTCAACCAAGATAAGAAGAACATGCTCTTTTCTGGTACAAACATAGCAGC TGGCAAAGCCATGGGAGTGGTGGTGGCAACTGGAGTTAACACTGAAATTGGCAAGATCCG GGATGAAATGGTAGCAACGGAACAGGAGAGAACACCCCTCCAGCAGAAACTAGATGAGTT TGGGGAACAGCTTTCCAAAGTCATCTCCCTTATTTGCATTGCAGTCTGGATCATAAACAT TGGGCACTTCAATGACCCGGTTCATGGAGGCTCCTGGATCAGAGGTGCTATTTATTACTT TAAAATTGCAGTGGCCCTGGCTGTAGCAGCCATTCCTGAAGGCCTGCCTGCTGTCATTAC CACCTGCCTGGCTCTTGGAACTCGTAGAATGGCAAAGAAAAATGCCATTGTTCGAAGTCT CCCTTCTGTGGAAACCCTTGGTTGCACTTCCGTTATCTGCTCAGACAAGACTGGTACACT TACAACAAACCAGATGTCAGTCTGCAGGATGTTCATTCTGGACAAAGTTGAAGGTGATAC TTGTTCCCTGAATGAGTTTACCATAACTGGATCAACATATGCTCCTATTGGAGAAGTCCA TAAAGATGATAAACCAGTAAAGTGTCATCAATATGATGGTCTTGTGGAATTGGCAACAAT TTGTGCTCTCTGTAATGACTCTGCTTTGGATTACAATGAGGCAAAGGGTGTGTATGAAAA AGTTGGAGAAGCTACAGAGACTGCTCTCACTTGCCTGGTAGAGAAGATGAATGTCTTTGA TACTGAGTTAAAGGGTCTTTCTAAAATAGAACGAGCAAATGCCTGCAACTCGGTCATTAA ACAATTGATGAAAAAGGAATTTACTCTAGAGTTTTCACGTGATAGAAAATCAATGTCAGT TTATTGTACACCTCTTAGACAACTTACTACGTTACCTTAGCTCTTCAATGTGAAGGGTGC TCCTTTCCCATACTCTCAGATTAAATGACTGGCTGTTTGACCAAAAAAATAAAAGCAGTC AATCAACAGATAATTTCTATATGTAACCTTCCCCCCTGGTGCTGTGAAATGGACTTTTGC TCCTAGCAAAACCCAGCTGCCCCTTGTCTAGTGAGCCCCAACCCTCTCCTGCACTTATCA GTCTCCCTTCTGCTAGACCTTCATTAGAGATGTAATCGTATGTTTTTTATCTGAAACCTT TCTTTTGACTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGAAGCCCTTAAGGAGTATGAGCCTGAAATGGGCAAAGTGTATCGACAGGACAGGAAGAG TGTACAACGAATTAAAGCTAAAGACATAGTTCCTGGTGATATTGTAGAAATTGCTGTTGG TGACAAAGTTCCTGCTGATATAAGATTAACGTCCATCAAATCTACTACTCTAAGAGTTGA CCAGTCAATTCTCACAGGTGAGTCTGTCTCTGTCATCAAGCACACCGACCCTGTCCCTGA CCCACGGGCTGTCAACCAAGATAAGAAGAACATGCTCTTTTCTGGTACAAACATAGCAGC TGGCAAAGCCATGGGAGTGGTGGTGGCAACTGGAGTTAACACTGAAATTGGCAAGATCCG GGATGAAATGGTAGCAACGGAACAGGAGAGAACACCCCTCCAGCAGAAACTAGATGAGTT TGGGGAACAGCTTTCCAAAGTCATCTCCCTTATTTGCATTGCAGTCTGGATCATAAACAT TGGGCACTTCAATGACCCGGTTCATGGAGGCTCCTGGATCAGAGGTGCTATTTATTACTT TAAAATTGCAGTGGCCCTGGCTGTAGCAGCCATTCCTGAAGGCCTGCCTGCTGTCATTAC CACCTGCCTGGCTCTTGGAACTCGTAGAATGGCAAAGAAAAATGCCATTGTTCGAAGTCT CCCTTCTGTGGAAACCCTTGGTTGCACTTCCGTTATCTGCTCAGACAAGACTGGTACACT TACAACAAACCAGATGTCAGTCTGCAGGATGTTCATTCTGGACAAAGTTGAAGGTGATAC TTGTTCCCTGAATGAGTTTACCATAACTGGATCAACATATGCTCCTATTGGAGAAGTCCA TAAAGATGATAAACCAGTAAAGTGTCATCAATATGATGGTCTTGTGGAATTGGCAACAAT TTGTGCTCTCTGTAATGACTCTGCTTTGGATTACAATGAGGCAAAGGGTGTGTATGAAAA AGTTGGAGAAGCTACAGAGACTGCTCTCACTTGCCTGGTAGAGAAGATGAATGTCTTTGA TACTGAGTTAAAGGGTCTTTCTAAAATAGAACGAGCAAATGCCTGCAACTCGGTCATTAA ACAATTGATGAAAAAGGAATTTACTCTAGAGTTTTCACGTGATAGAAAATCAATGTCAGT TTATTGTACACCTCTTAGACAACTTACTACGTTACCTTAGCTCTTCAATGTGAAGGGTGC TCCTTTCCCATACTCTCAGATTAAATGACTGGCTGTTTGACCAAAAAAATAAAAGCAGTC AATCAACAGATAATTTCTATATGTAACCTTCCCCCCTGGTGCTGTGAAATGGACTTTTGC TCCTAGCAAAACCCAGCTGCCCCTTGTCTAGTGAGCCCCAACCCTCTCCTGCACTTATCA GTCTCCCTTCTGCTAGACCTTCATTAGAGATGTAATCGTATGTTTTTTATCTGAAACCTT TCTTTTGACTTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 542-661, - strand, RNAz p=0.667145 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 542-661, - strand, RNAz p=0.667145 |
| Aligned organism(s): 58 entry(ies) | More info |
| Aligned organism(s): 58 entry(ies) | Help | Less info |
| 1-119, gnl|bosTau2|chr17 (30382694-30382576) | |
| 1-119, gnl|canFam2|chr26 (11179789-11179960) | |
| 1-119, gnl|danRer3|chr21 (7839576-7839742) | |
| 1-119, gnl|dasNov1|scaffold_212696 (88-256) | |
| 1-119, gnl|echTel1|scaffold_317797 (40995-40822) | |
| 1-119, gnl|fr1|chrUn (56433488-56433658) | |
| 1-119, gnl|galGal2|chr15 (5288825-5288666) | |
| 1-119, gnl|hg17|chr12 (109197105-109197275) | |
| 1-119, gnl|Hg17|chr12 (109197147-109197265) | |
| 1-119, gnl|loxAfr1|scaffold_14582 (4180-4357) | |
| 1-119, gnl|mm7|chr5 (121723619-121723449) | |
| 1-119, gnl|Mm7|chr5 (121723575-121723457) | |
| 1-119, gnl|monDom2|scaffold_97 (1012455-1012283) | |
| 1-119, gnl|oryCun1|scaffold_200643 (28358-28527) | |
| 1-119, gnl|panTro1|chr10 (111792230-111792400) | |
| 1-119, gnl|rheMac2|chr11 (111205937-111206107) | |
| 1-119, gnl|rn3|chr12 (35143146-35143316) | |
| 1-119, gnl|tetNig1|chr12 (11593858-11594012) | |
| 1-119, gnl|xenTro1|scaffold_501 (590758-590587) | |
| 284-748, gnl|bosTau2|chr17 (30360257-30359793) | |
| 284-748, gnl|canFam2|chr26 (11205832-11206203) | |
| 284-748, gnl|danRer3|chr21 (7857523-7857867) | |
| 284-748, gnl|dasNov1|scaffold_10889 (62795-63168) | |
| 284-748, gnl|echTel1|scaffold_104982 (8190-7821) | |
| 284-748, gnl|fr1|chrUn (56438906-56439264) | |
| 284-748, gnl|galGal2|chr15 (5277196-5276823) | |
| 284-748, gnl|hg17|chr12 (109228033-109228403) | |
| 284-748, gnl|Hg17|chr12 (109228078-109228542) | |
| 284-748, gnl|loxAfr1|scaffold_14582 (23272-23639) | |
| 284-748, gnl|mm7|chr5 (121704082-121703713) | |
| 284-748, gnl|Mm7|chr5 (121704036-121703572) | |
| 284-748, gnl|monDom2|scaffold_97 (984126-983741) | |
| 284-748, gnl|oryCun1|scaffold_200643 (57184-57554) | |
| 284-748, gnl|panTro1|chr10 (111822489-111822859) | |
| 284-748, gnl|rheMac2|chr20 (26961019-26960636) | |
| 284-748, gnl|rn3|chr12 (35163485-35163851) | |
| 284-748, gnl|tetNig1|chr12 (11598183-11598522) | |
| 284-748, gnl|xenTro1|scaffold_501 (585681-585319) | |
| 906-1079, gnl|bosTau2|chr17 (30353838-30353666) | |
| 906-1079, gnl|canFam2|chr26 (11213383-11213550) | |
| 906-1079, gnl|danRer3|chr21 (7866554-7866709) | |
| 906-1079, gnl|echTel1|scaffold_104982 (4776-4619) | |
| 906-1079, gnl|fr1|chrUn (56441546-56441696) | |
| 906-1079, gnl|galGal2|chr15 (5271436-5271269) | |
| 906-1079, gnl|hg17|chr12 (109234506-109234679) | |
| 906-1079, gnl|Hg17|chr12 (109234502-109234675) | |
| 906-1079, gnl|loxAfr1|scaffold_14582 (28591-28759) | |
| 906-1079, gnl|mm7|chr5 (121700312-121700164) | |
| 906-1079, gnl|Mm7|chr5 (121700308-121700165) | |
| 906-1079, gnl|monDom2|scaffold_97 (978234-978063) | |
| 906-1079, gnl|oryCun1|scaffold_200643 (66567-66742) | |
| 906-1079, gnl|panTro1|chr10 (111830142-111830315) | |
| 906-1079, gnl|rheMac2|chr11 (111244389-111244562) | |
| 906-1079, gnl|rn3|chr12 (35167271-35167420) | |
| 906-1079, gnl|tetNig1|chr12 (11600591-11600730) | |
| 906-1079, gnl|xenTro1|scaffold_501 (580171-579996) | |
| 1155-1440, gnl|bosTau2|chr17 (30353593-30353309) | |
| 1155-1440, gnl|Hg17|chr12 (109234751-109235052) |
| Aligned organism(s): 58 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-119, gnl|bosTau2|chr17 (30382694-30382576) | |
| 1-119, gnl|canFam2|chr26 (11179789-11179960) | |
| 1-119, gnl|danRer3|chr21 (7839576-7839742) | |
| 1-119, gnl|dasNov1|scaffold_212696 (88-256) | |
| 1-119, gnl|echTel1|scaffold_317797 (40995-40822) | |
| 1-119, gnl|fr1|chrUn (56433488-56433658) | |
| 1-119, gnl|galGal2|chr15 (5288825-5288666) | |
| 1-119, gnl|hg17|chr12 (109197105-109197275) | |
| 1-119, gnl|Hg17|chr12 (109197147-109197265) | |
| 1-119, gnl|loxAfr1|scaffold_14582 (4180-4357) | |
| 1-119, gnl|mm7|chr5 (121723619-121723449) | |
| 1-119, gnl|Mm7|chr5 (121723575-121723457) | |
| 1-119, gnl|monDom2|scaffold_97 (1012455-1012283) | |
| 1-119, gnl|oryCun1|scaffold_200643 (28358-28527) | |
| 1-119, gnl|panTro1|chr10 (111792230-111792400) | |
| 1-119, gnl|rheMac2|chr11 (111205937-111206107) | |
| 1-119, gnl|rn3|chr12 (35143146-35143316) | |
| 1-119, gnl|tetNig1|chr12 (11593858-11594012) | |
| 1-119, gnl|xenTro1|scaffold_501 (590758-590587) | |
| 284-748, gnl|bosTau2|chr17 (30360257-30359793) | |
| 284-748, gnl|canFam2|chr26 (11205832-11206203) | |
| 284-748, gnl|danRer3|chr21 (7857523-7857867) | |
| 284-748, gnl|dasNov1|scaffold_10889 (62795-63168) | |
| 284-748, gnl|echTel1|scaffold_104982 (8190-7821) | |
| 284-748, gnl|fr1|chrUn (56438906-56439264) | |
| 284-748, gnl|galGal2|chr15 (5277196-5276823) | |
| 284-748, gnl|hg17|chr12 (109228033-109228403) | |
| 284-748, gnl|Hg17|chr12 (109228078-109228542) | |
| 284-748, gnl|loxAfr1|scaffold_14582 (23272-23639) | |
| 284-748, gnl|mm7|chr5 (121704082-121703713) | |
| 284-748, gnl|Mm7|chr5 (121704036-121703572) | |
| 284-748, gnl|monDom2|scaffold_97 (984126-983741) | |
| 284-748, gnl|oryCun1|scaffold_200643 (57184-57554) | |
| 284-748, gnl|panTro1|chr10 (111822489-111822859) | |
| 284-748, gnl|rheMac2|chr20 (26961019-26960636) | |
| 284-748, gnl|rn3|chr12 (35163485-35163851) | |
| 284-748, gnl|tetNig1|chr12 (11598183-11598522) | |
| 284-748, gnl|xenTro1|scaffold_501 (585681-585319) | |
| 906-1079, gnl|bosTau2|chr17 (30353838-30353666) | |
| 906-1079, gnl|canFam2|chr26 (11213383-11213550) | |
| 906-1079, gnl|danRer3|chr21 (7866554-7866709) | |
| 906-1079, gnl|echTel1|scaffold_104982 (4776-4619) | |
| 906-1079, gnl|fr1|chrUn (56441546-56441696) | |
| 906-1079, gnl|galGal2|chr15 (5271436-5271269) | |
| 906-1079, gnl|hg17|chr12 (109234506-109234679) | |
| 906-1079, gnl|Hg17|chr12 (109234502-109234675) | |
| 906-1079, gnl|loxAfr1|scaffold_14582 (28591-28759) | |
| 906-1079, gnl|mm7|chr5 (121700312-121700164) | |
| 906-1079, gnl|Mm7|chr5 (121700308-121700165) | |
| 906-1079, gnl|monDom2|scaffold_97 (978234-978063) | |
| 906-1079, gnl|oryCun1|scaffold_200643 (66567-66742) | |
| 906-1079, gnl|panTro1|chr10 (111830142-111830315) | |
| 906-1079, gnl|rheMac2|chr11 (111244389-111244562) | |
| 906-1079, gnl|rn3|chr12 (35167271-35167420) | |
| 906-1079, gnl|tetNig1|chr12 (11600591-11600730) | |
| 906-1079, gnl|xenTro1|scaffold_501 (580171-579996) | |
| 1155-1440, gnl|bosTau2|chr17 (30353593-30353309) | |
| 1155-1440, gnl|Hg17|chr12 (109234751-109235052) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.245128) | |
| mas (0.210305) | |
| spl (0.143184) |