Non-Coding RNA Search

Ss1.1-Pig4-TMW8045N19.3

Sequence:


               
               AGAACCGAGAGCAAAGAAAGGCCGACGCAATCAAAGTGTGGAGCCCAAAAAAGAAGAACC
AGAGCCTGAAACTGAAGCAGTAAGGGCCAGCCAGGAGATCCCCACGATGCCTCAGCCAAT
CGAAAAAGTTTCCGTATCAACTCAGACCAAGAAGTTAAGTGCCTCTTCTCCAAGAATGCT
GCACCGAAGCACCCAGACCACCAGTGACGGAGTGTGTCAGAGCCTGTGCCACGACAAGTA
CACCAAAATCTTCAATGACTTTAAAGACCGGATGAAGTCTGACCACAAGCGAGAAACGGA
AAGGGTTGTACGAGAAGCTCTAGAAAAGCTGCGTTCTGAAATGGAAGAAGAAAAAAGACA
AGCTGTAAATAAAGCTAGCCAATATGCAGGGTGAGATGGACAGAAAGTGTAAGCAAGTGA
AGGAGAAATGTAAAGAAGAGTTTGTAGAAGAAATCAAGAAGTTAGCAACACAGCACAAAC
AGCTAATTTCTCAGACCAAGAAGAAGCAGTGGTGCTACAACTGTGAGGAGGAGGCCATGT
ACCACTGCTGCTGGAACACATCCTACTGCTCAATCAAGTGTCAGCAGGAGCACTGGCACG
CAGAACACAAGCGCACCTGTCGCCGGAAAAGATGAAGGCTAGTTCCTCCTGGTGAATCAC
TGACGATTATTCTTCTCAGACACAGCGGTTTTTGTTTCCAAGAAGCCAAAATTGTTTAGA
ATTTGCTTCCCATTTTGCACCAGCCTTTAAACACTTTTCGTGAAGAAATTTTGCACAGTA
GTTTAAATCTTTTGTTAATGCTCCTCTGGAGTTTTTCAGGGGGTAAAAGTAACATCAGTG
GAGGGTATTATTTTAAATAAATTTTAATTGAGAGTTTGTTGCATTTTCAGCAAATTTTAA
AACATTTTTAGGTTTTACAGAGATTTTAACCTTTAAACAACAGATCTTTAAAAAAACAAC
AGGTGAATACAAGTGAGTTTAACAAAGAAACATTTAAAATAGATCTGAATGTAAGAACTG
CAGAACTGCTTCAGAACTGAAACATACTACCTTGATGTGACGTTTATCTCTTAACCTTGT
TGAGCTGGTTTTGTTCAGCTTAATTTACTGTTTAAAGGCATTATCTATTGGTTATGCCAG
TGGGTATATGATTGAATTTAGGGAACAGGGTTGACACAGCAGGTGCTAGTCCTGCATATT
TTTTCTTAAATATTTCCCAATTGTGTTTTTCATTATTTCTTTTCAATATATAACTTTTAT
AACAAATTATTAGCTTTGATCTTGTAGTTTAAAATTGCAGGGAACTGGGGTAATCTTTTA
CTGAGCTGGATCTTAGAGAAAATGAATATTTAAATTTTAAAGTTTGCACATTTCATCTTT
GTCCTAACATGAGTGCTTGTAACAAAATAAACAACAAAAATAAAATAAAAAAGCCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAACCGAGAGCAAAGAAAGGCCGACGCAATCAAAGTGTGGAGCCCAAAAAAGAAGAACC
AGAGCCTGAAACTGAAGCAGTAAGGGCCAGCCAGGAGATCCCCACGATGCCTCAGCCAAT
CGAAAAAGTTTCCGTATCAACTCAGACCAAGAAGTTAAGTGCCTCTTCTCCAAGAATGCT
GCACCGAAGCACCCAGACCACCAGTGACGGAGTGTGTCAGAGCCTGTGCCACGACAAGTA
CACCAAAATCTTCAATGACTTTAAAGACCGGATGAAGTCTGACCACAAGCGAGAAACGGA
AAGGGTTGTACGAGAAGCTCTAGAAAAGCTGCGTTCTGAAATGGAAGAAGAAAAAAGACA
AGCTGTAAATAAAGCTAGCCAATATGCAGGGTGAGATGGACAGAAAGTGTAAGCAAGTGA
AGGAGAAATGTAAAGAAGAGTTTGTAGAAGAAATCAAGAAGTTAGCAACACAGCACAAAC
AGCTAATTTCTCAGACCAAGAAGAAGCAGTGGTGCTACAACTGTGAGGAGGAGGCCATGT
ACCACTGCTGCTGGAACACATCCTACTGCTCAATCAAGTGTCAGCAGGAGCACTGGCACG
CAGAACACAAGCGCACCTGTCGCCGGAAAAGATGAAGGCTAGTTCCTCCTGGTGAATCAC
TGACGATTATTCTTCTCAGACACAGCGGTTTTTGTTTCCAAGAAGCCAAAATTGTTTAGA
ATTTGCTTCCCATTTTGCACCAGCCTTTAAACACTTTTCGTGAAGAAATTTTGCACAGTA
GTTTAAATCTTTTGTTAATGCTCCTCTGGAGTTTTTCAGGGGGTAAAAGTAACATCAGTG
GAGGGTATTATTTTAAATAAATTTTAATTGAGAGTTTGTTGCATTTTCAGCAAATTTTAA
AACATTTTTAGGTTTTACAGAGATTTTAACCTTTAAACAACAGATCTTTAAAAAAACAAC
AGGTGAATACAAGTGAGTTTAACAAAGAAACATTTAAAATAGATCTGAATGTAAGAACTG
CAGAACTGCTTCAGAACTGAAACATACTACCTTGATGTGACGTTTATCTCTTAACCTTGT
TGAGCTGGTTTTGTTCAGCTTAATTTACTGTTTAAAGGCATTATCTATTGGTTATGCCAG
TGGGTATATGATTGAATTTAGGGAACAGGGTTGACACAGCAGGTGCTAGTCCTGCATATT
TTTTCTTAAATATTTCCCAATTGTGTTTTTCATTATTTCTTTTCAATATATAACTTTTAT
AACAAATTATTAGCTTTGATCTTGTAGTTTAAAATTGCAGGGAACTGGGGTAATCTTTTA
CTGAGCTGGATCTTAGAGAAAATGAATATTTAAATTTTAAAGTTTGCACATTTCATCTTT
GTCCTAACATGAGTGCTTGTAACAAAATAAACAACAAAAATAAAATAAAAAAGCCAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55633335|ref|XP_507615.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55633335|ref|XP_507615.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               631-750, - strand, RNAz p=0.76512
               

               
               791-910, - strand, RNAz p=0.531131
               

               
               1028-1267, + strand, RNAz p=0.988093

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               631-750, - strand, RNAz p=0.76512
               

               
               791-910, - strand, RNAz p=0.531131
               

               
               1028-1267, + strand, RNAz p=0.988093

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC091489, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC091489, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               56-328, gnl|bosTau2|chr13 (31872748-31873020)
               

               
               56-328, gnl|Hg17|chr10 (284276-284548)
               

               
               56-328, gnl|Mm7|chr13 (9603127-9602855)
               


               
               512-1425, gnl|bosTau2|chr13 (31875226-31876137)
               

               
               512-1425, gnl|Hg17|chr10 (288287-289193)
               

               
               512-1425, gnl|Mm7|chr13 (9600388-9599529)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               56-328, gnl|bosTau2|chr13 (31872748-31873020)
               

               
               56-328, gnl|Hg17|chr10 (284276-284548)
               

               
               56-328, gnl|Mm7|chr13 (9603127-9602855)
               


               
               512-1425, gnl|bosTau2|chr13 (31875226-31876137)
               

               
               512-1425, gnl|Hg17|chr10 (288287-289193)
               

               
               512-1425, gnl|Mm7|chr13 (9600388-9599529)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               liv (0.292569)
               

               
               hea (0.204499)
               

               
               mga (0.160205)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               ste (0.135208)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               ecc (0.115035)

Expressed library(ies): 11 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.292569)
               

               
               hea (0.204499)
               

               
               mga (0.160205)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               ste (0.135208)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               ecc (0.115035)

	631-750, - strand, RNAz p=0.76512
	791-910, - strand, RNAz p=0.531131
	1028-1267, + strand, RNAz p=0.988093

	56-328, gnl\|bosTau2\|chr13 (31872748-31873020)
	56-328, gnl\|Hg17\|chr10 (284276-284548)
	56-328, gnl\|Mm7\|chr13 (9603127-9602855)

	512-1425, gnl\|bosTau2\|chr13 (31875226-31876137)
	512-1425, gnl\|Hg17\|chr10 (288287-289193)
	512-1425, gnl\|Mm7\|chr13 (9600388-9599529)

	liv (0.292569)
	hea (0.204499)
	mga (0.160205)
	lin (0.145603)
	spl (0.143184)
	csk (0.140746)
	cst (0.140036)
	ste (0.135208)
	kid (0.129735)
	bla (0.124347)
	ecc (0.115035)