Ss1.1-Pig4-TMW8045O07.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCACCGTGGACGGGACGGGACGGGTGAGCCGGCTCGCGACGGGCTGGCTGGCGCAGCCTT TGCCCCCGGCTTCCTGTAGCCTCGTTCCCTGGTGTGTGCGTGTGGTCTGTCTGTCTGTCC GTCCGTCCGTCCGTCCGTTCCCGCAGGTTCTAAAGAAGTACCCACGCCTCTGGTGCATGG CCAAGCCCCCCAGCCGGCGGCCCAAGCTCTACATTGTCAACTTGCAGTGGACTCCGAAGG ATGACTGGGCGGCCCTGAAGCTGCACGGGAAGTGTGACGACGTCATGCGGCTGCTCATGG ACGAGCTGGGCCTGGAGATCCCCCCCTACAGCAGGTGGCAGGACCCCATCTTCTCCCTGG CGACTCCCCTGCGTGCGGGTGAAGAAGGCAGCCACAGTCGCAAGTCTCTGTGCAGGAGCC GAGAGGAGCCTGGGCCTGAGGACAGGGGCGCGCCACGTAGCTCGGCCCCCGCCCTGGGTG CCCCCCGGAGAAGGGGCTGCACCAGAAGTGAAGCCCTTGCCCGCTTCCTCAGACCTGGAC GCACACAGGGACTGTGTATTTTTGGACTGACTGCCAGCTCACTCCTCTCTCCTGATGTTA AGGCATGCCTCTGGATGTTGAGACATGTTCCCTGGAAGCGCTGCACGTAGTGTCAGAGTA ACACCCTAGCTTCCAGTGGAGCTAGGGGATCAGCCAGCACCGCCCCCACCCCCCAATCCC AGGAAACCCTAAGGCAGGGACCCTGGCTGTTTGATAGTGCAAGAAAAAGGGGCAGCCACG TCTTCTGTGAGAACAGAACTCGGGTTATTGCACGCCTGGCCGGCCAAGAGGAAGCACACG CTGCCTTACCTCATTCATCAGGCTAGTCTCAGGGGCCTCGACCCTATTTCTACTACTTCT TACTGAGAATGTTAAATTCAAGGAAGCCTTTTTCTGTATTGGGTATGCTGCAAAGGGATG GTTTTGAGCCTTGGCGCTCAGCAGACCTTTTTATTATTAAACATCTCCGCACTGTCAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCACCGTGGACGGGACGGGACGGGTGAGCCGGCTCGCGACGGGCTGGCTGGCGCAGCCTT TGCCCCCGGCTTCCTGTAGCCTCGTTCCCTGGTGTGTGCGTGTGGTCTGTCTGTCTGTCC GTCCGTCCGTCCGTCCGTTCCCGCAGGTTCTAAAGAAGTACCCACGCCTCTGGTGCATGG CCAAGCCCCCCAGCCGGCGGCCCAAGCTCTACATTGTCAACTTGCAGTGGACTCCGAAGG ATGACTGGGCGGCCCTGAAGCTGCACGGGAAGTGTGACGACGTCATGCGGCTGCTCATGG ACGAGCTGGGCCTGGAGATCCCCCCCTACAGCAGGTGGCAGGACCCCATCTTCTCCCTGG CGACTCCCCTGCGTGCGGGTGAAGAAGGCAGCCACAGTCGCAAGTCTCTGTGCAGGAGCC GAGAGGAGCCTGGGCCTGAGGACAGGGGCGCGCCACGTAGCTCGGCCCCCGCCCTGGGTG CCCCCCGGAGAAGGGGCTGCACCAGAAGTGAAGCCCTTGCCCGCTTCCTCAGACCTGGAC GCACACAGGGACTGTGTATTTTTGGACTGACTGCCAGCTCACTCCTCTCTCCTGATGTTA AGGCATGCCTCTGGATGTTGAGACATGTTCCCTGGAAGCGCTGCACGTAGTGTCAGAGTA ACACCCTAGCTTCCAGTGGAGCTAGGGGATCAGCCAGCACCGCCCCCACCCCCCAATCCC AGGAAACCCTAAGGCAGGGACCCTGGCTGTTTGATAGTGCAAGAAAAAGGGGCAGCCACG TCTTCTGTGAGAACAGAACTCGGGTTATTGCACGCCTGGCCGGCCAAGAGGAAGCACACG CTGCCTTACCTCATTCATCAGGCTAGTCTCAGGGGCCTCGACCCTATTTCTACTACTTCT TACTGAGAATGTTAAATTCAAGGAAGCCTTTTTCTGTATTGGGTATGCTGCAAAGGGATG GTTTTGAGCCTTGGCGCTCAGCAGACCTTTTTATTATTAAACATCTCCGCACTGTCAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 57 entry(ies) | More info |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
| 120-234, gnl|bosTau2|chr19 (45433149-45433035) | |
| 120-234, gnl|Hg17|chr17 (77465360-77465248) | |
| 120-234, gnl|Mm7|chr11 (120729566-120729461) | |
| 323-504, gnl|bosTau2|chr19 (45431652-45431471) | |
| 323-504, gnl|canFam2|chr9 (3382906-3382680) | |
| 323-504, gnl|canFam2|chr9 (3382906-3382680) | |
| 323-504, gnl|danRer3|chr22 (48952907-48952679) | |
| 323-504, gnl|danRer3|chr22 (48952907-48952679) | |
| 323-504, gnl|dasNov1|scaffold_77162 (4872-5094) | |
| 323-504, gnl|dasNov1|scaffold_77162 (4872-5094) | |
| 323-504, gnl|echTel1|scaffold_299303 (601-821) | |
| 323-504, gnl|echTel1|scaffold_299303 (601-821) | |
| 323-504, gnl|fr1|chrUn (148482221-148482433) | |
| 323-504, gnl|fr1|chrUn (148482221-148482433) | |
| 323-504, gnl|hg17|chr17 (77463575-77463800) | |
| 323-504, gnl|Hg17|chr17 (77463795-77463613) | |
| 323-504, gnl|hg17|chr17_random (1969648-1969875) | |
| 323-504, gnl|loxAfr1|scaffold_103794 (9208-8986) | |
| 323-504, gnl|loxAfr1|scaffold_103794 (9208-8986) | |
| 323-504, gnl|mm7|chr11 (120727885-120728111) | |
| 323-504, gnl|mm7|chr11 (120727885-120728111) | |
| 323-504, gnl|Mm7|chr11 (120728106-120727922) | |
| 323-504, gnl|monDom2|scaffold_18 (14883119-14883355) | |
| 323-504, gnl|monDom2|scaffold_18 (14883119-14883355) | |
| 323-504, gnl|panTro1|chr19 (81227269-81227494) | |
| 323-504, gnl|panTro1|chr19 (81227269-81227494) | |
| 323-504, gnl|rheMac2|chr16 (77341979-77342204) | |
| 323-504, gnl|rheMac2|chr16 (77341979-77342204) | |
| 323-504, gnl|rn3|chr10 (110024652-110024879) | |
| 323-504, gnl|rn3|chr10 (110024652-110024879) | |
| 323-504, gnl|tetNig1|chr18 (2130267-2130447) | |
| 323-504, gnl|tetNig1|chr18 (2130267-2130447) | |
| 323-504, gnl|xenTro1|scaffold_973 (91708-91487) | |
| 323-504, gnl|xenTro1|scaffold_973 (91708-91487) | |
| 764-1016, gnl|bosTau2|chr19 (45431209-45430951) | |
| 764-1016, gnl|canFam2|chr9 (3383343-3383030) | |
| 764-1016, gnl|canFam2|chr9 (3383354-3383030) | |
| 764-1016, gnl|dasNov1|scaffold_77162 (4391-4683) | |
| 764-1016, gnl|dasNov1|scaffold_77162 (4395-4683) | |
| 764-1016, gnl|echTel1|scaffold_299303 (198-452) | |
| 764-1016, gnl|echTel1|scaffold_299303 (183-452) | |
| 764-1016, gnl|hg17|chr17 (77463106-77463425) | |
| 764-1016, gnl|Hg17|chr17 (77463363-77463107) | |
| 764-1016, gnl|hg17|chr17_random (1969168-1969498) | |
| 764-1016, gnl|loxAfr1|scaffold_103794 (9666-9379) | |
| 764-1016, gnl|loxAfr1|scaffold_103794 (9684-9379) | |
| 764-1016, gnl|mm7|chr11 (120727416-120727720) | |
| 764-1016, gnl|mm7|chr11 (120727407-120727720) | |
| 764-1016, gnl|Mm7|chr11 (120727659-120727416) | |
| 764-1016, gnl|monDom2|scaffold_18 (14882562-14882913) | |
| 764-1016, gnl|monDom2|scaffold_18 (14882562-14882913) | |
| 764-1016, gnl|panTro1|chr19 (81226803-81227122) | |
| 764-1016, gnl|panTro1|chr19 (81226793-81227122) | |
| 764-1016, gnl|rheMac2|chr16 (77341515-77341833) | |
| 764-1016, gnl|rheMac2|chr16 (77341505-77341833) | |
| 764-1016, gnl|rn3|chr10 (110024173-110024473) | |
| 764-1016, gnl|rn3|chr10 (110024164-110024473) |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 120-234, gnl|bosTau2|chr19 (45433149-45433035) | |
| 120-234, gnl|Hg17|chr17 (77465360-77465248) | |
| 120-234, gnl|Mm7|chr11 (120729566-120729461) | |
| 323-504, gnl|bosTau2|chr19 (45431652-45431471) | |
| 323-504, gnl|canFam2|chr9 (3382906-3382680) | |
| 323-504, gnl|canFam2|chr9 (3382906-3382680) | |
| 323-504, gnl|danRer3|chr22 (48952907-48952679) | |
| 323-504, gnl|danRer3|chr22 (48952907-48952679) | |
| 323-504, gnl|dasNov1|scaffold_77162 (4872-5094) | |
| 323-504, gnl|dasNov1|scaffold_77162 (4872-5094) | |
| 323-504, gnl|echTel1|scaffold_299303 (601-821) | |
| 323-504, gnl|echTel1|scaffold_299303 (601-821) | |
| 323-504, gnl|fr1|chrUn (148482221-148482433) | |
| 323-504, gnl|fr1|chrUn (148482221-148482433) | |
| 323-504, gnl|hg17|chr17 (77463575-77463800) | |
| 323-504, gnl|Hg17|chr17 (77463795-77463613) | |
| 323-504, gnl|hg17|chr17_random (1969648-1969875) | |
| 323-504, gnl|loxAfr1|scaffold_103794 (9208-8986) | |
| 323-504, gnl|loxAfr1|scaffold_103794 (9208-8986) | |
| 323-504, gnl|mm7|chr11 (120727885-120728111) | |
| 323-504, gnl|mm7|chr11 (120727885-120728111) | |
| 323-504, gnl|Mm7|chr11 (120728106-120727922) | |
| 323-504, gnl|monDom2|scaffold_18 (14883119-14883355) | |
| 323-504, gnl|monDom2|scaffold_18 (14883119-14883355) | |
| 323-504, gnl|panTro1|chr19 (81227269-81227494) | |
| 323-504, gnl|panTro1|chr19 (81227269-81227494) | |
| 323-504, gnl|rheMac2|chr16 (77341979-77342204) | |
| 323-504, gnl|rheMac2|chr16 (77341979-77342204) | |
| 323-504, gnl|rn3|chr10 (110024652-110024879) | |
| 323-504, gnl|rn3|chr10 (110024652-110024879) | |
| 323-504, gnl|tetNig1|chr18 (2130267-2130447) | |
| 323-504, gnl|tetNig1|chr18 (2130267-2130447) | |
| 323-504, gnl|xenTro1|scaffold_973 (91708-91487) | |
| 323-504, gnl|xenTro1|scaffold_973 (91708-91487) | |
| 764-1016, gnl|bosTau2|chr19 (45431209-45430951) | |
| 764-1016, gnl|canFam2|chr9 (3383343-3383030) | |
| 764-1016, gnl|canFam2|chr9 (3383354-3383030) | |
| 764-1016, gnl|dasNov1|scaffold_77162 (4391-4683) | |
| 764-1016, gnl|dasNov1|scaffold_77162 (4395-4683) | |
| 764-1016, gnl|echTel1|scaffold_299303 (198-452) | |
| 764-1016, gnl|echTel1|scaffold_299303 (183-452) | |
| 764-1016, gnl|hg17|chr17 (77463106-77463425) | |
| 764-1016, gnl|Hg17|chr17 (77463363-77463107) | |
| 764-1016, gnl|hg17|chr17_random (1969168-1969498) | |
| 764-1016, gnl|loxAfr1|scaffold_103794 (9666-9379) | |
| 764-1016, gnl|loxAfr1|scaffold_103794 (9684-9379) | |
| 764-1016, gnl|mm7|chr11 (120727416-120727720) | |
| 764-1016, gnl|mm7|chr11 (120727407-120727720) | |
| 764-1016, gnl|Mm7|chr11 (120727659-120727416) | |
| 764-1016, gnl|monDom2|scaffold_18 (14882562-14882913) | |
| 764-1016, gnl|monDom2|scaffold_18 (14882562-14882913) | |
| 764-1016, gnl|panTro1|chr19 (81226803-81227122) | |
| 764-1016, gnl|panTro1|chr19 (81226793-81227122) | |
| 764-1016, gnl|rheMac2|chr16 (77341515-77341833) | |
| 764-1016, gnl|rheMac2|chr16 (77341505-77341833) | |
| 764-1016, gnl|rn3|chr10 (110024173-110024473) | |
| 764-1016, gnl|rn3|chr10 (110024164-110024473) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| fty (0.17584) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| nje (0.16592) | |
| cov (0.132153) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| med (0.116252) | |
| cbl (0.114797) | |
| nbm (0.0993246) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fty (0.17584) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| nje (0.16592) | |
| cov (0.132153) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| med (0.116252) | |
| cbl (0.114797) | |
| nbm (0.0993246) |