Non-Coding RNA Search

Ss1.1-Pig4-TMW8045O20.5

Sequence:


               
               GGAAAGGGGAGCTGCCCCACGACTCTGGAGGCCTGGGGGCTTGGAGGGTCACACTGAGCC
CAGGCTGCTTTCAGCAGACACCGACAGACCCCACAGCAGCTCCAGGAGCCCAGGTTCCAG
TGGCCAGAGAGAAGACCCAGAGCTGCCTGCAGCCATGTCAGCTCTCAGCCTGGTCATTCT
GGGCCTGCTTATGGCAGTGCCACCTGCCAGCTGTCAGCAAGGCCTGGGGAACCTGCAGCC
CTGGATGCAGGGCCTTATTGCTGTGGCTGTGTTCCTGGTCCTCGTCGCAATTGCTTTTGC
TATCAACCACTTCTGGTGCCAGGAAGAGCGGGAGCCCATGAACATGGTCATGACCACTGG
AAACAAAGCAGACGGGATCCTGATTGGAACTGAGGGCAAGTACTCCTCGATGGCTGCCAG
CTTCAGGTCCAATGAGCATGAGAATGCCTATGAGAACACCTCGGAGGAGGAGGGCAGGGT
TCACAGCACCCCGATGTGACCCCTGCTTGCCTGTGATGGATGGCCTGCGCCACCCAGCCC
CCTCCTTCTCTATACCAGAACTGCAGTAAGGAGCCAAATCCTCCAACCCCCACATCTGCC
TTATCCTAGCCAAGGTTGGAGCTCAGACTGTGTCCAGGCTGGGGCTCAGCTGTGGCCCTG
TGGTCCTGGGGGGGTGGTCCTGGGTCCTACCCAATTCAACTCAGAAGACCCTCCATCCTG
ACTCACATCTCCTGCTCCCTGACCCTGGCAACAGCCCCTATTTCTGTGAAATAAAGACAA
ACTTCTGAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAAGGGGAGCTGCCCCACGACTCTGGAGGCCTGGGGGCTTGGAGGGTCACACTGAGCC
CAGGCTGCTTTCAGCAGACACCGACAGACCCCACAGCAGCTCCAGGAGCCCAGGTTCCAG
TGGCCAGAGAGAAGACCCAGAGCTGCCTGCAGCCATGTCAGCTCTCAGCCTGGTCATTCT
GGGCCTGCTTATGGCAGTGCCACCTGCCAGCTGTCAGCAAGGCCTGGGGAACCTGCAGCC
CTGGATGCAGGGCCTTATTGCTGTGGCTGTGTTCCTGGTCCTCGTCGCAATTGCTTTTGC
TATCAACCACTTCTGGTGCCAGGAAGAGCGGGAGCCCATGAACATGGTCATGACCACTGG
AAACAAAGCAGACGGGATCCTGATTGGAACTGAGGGCAAGTACTCCTCGATGGCTGCCAG
CTTCAGGTCCAATGAGCATGAGAATGCCTATGAGAACACCTCGGAGGAGGAGGGCAGGGT
TCACAGCACCCCGATGTGACCCCTGCTTGCCTGTGATGGATGGCCTGCGCCACCCAGCCC
CCTCCTTCTCTATACCAGAACTGCAGTAAGGAGCCAAATCCTCCAACCCCCACATCTGCC
TTATCCTAGCCAAGGTTGGAGCTCAGACTGTGTCCAGGCTGGGGCTCAGCTGTGGCCCTG
TGGTCCTGGGGGGGTGGTCCTGGGTCCTACCCAATTCAACTCAGAAGACCCTCCATCCTG
ACTCACATCTCCTGCTCCCTGACCCTGGCAACAGCCCCTATTTCTGTGAAATAAAGACAA
ACTTCTGAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6ITQ4_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6ITQ4_PIG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               583-686, - strand, RNAz p=0.531281

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               583-686, - strand, RNAz p=0.531281

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               220-329, gnl|bosTau2|chr27 (16645487-16645378)
               

               
               220-329, gnl|canFam2|chr15 (16487453-16487242)
               

               
               220-329, gnl|echTel1|scaffold_286836 (393-582)
               

               
               220-329, gnl|hg17|chr1 (47364967-47365149)
               

               
               220-329, gnl|Hg17|chr1 (47365121-47365012)
               

               
               220-329, gnl|loxAfr1|scaffold_36967 (12-195)
               

               
               220-329, gnl|mm7|chr4 (114467749-114467558)
               

               
               220-329, gnl|Mm7|chr4 (114467579-114467688)
               

               
               220-329, gnl|panTro1|chr1 (45567691-45567873)
               

               
               220-329, gnl|rheMac2|chr1 (50011074-50011256)
               

               
               220-329, gnl|rn3|chr5 (135469606-135469420)
               


               
               417-712, gnl|bosTau2|chr27 (16642968-16642689)
               

               
               417-712, gnl|Hg17|chr1 (47361745-47361428)
               

               
               417-712, gnl|Mm7|chr4 (114469905-114470207)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               220-329, gnl|bosTau2|chr27 (16645487-16645378)
               

               
               220-329, gnl|canFam2|chr15 (16487453-16487242)
               

               
               220-329, gnl|echTel1|scaffold_286836 (393-582)
               

               
               220-329, gnl|hg17|chr1 (47364967-47365149)
               

               
               220-329, gnl|Hg17|chr1 (47365121-47365012)
               

               
               220-329, gnl|loxAfr1|scaffold_36967 (12-195)
               

               
               220-329, gnl|mm7|chr4 (114467749-114467558)
               

               
               220-329, gnl|Mm7|chr4 (114467579-114467688)
               

               
               220-329, gnl|panTro1|chr1 (45567691-45567873)
               

               
               220-329, gnl|rheMac2|chr1 (50011074-50011256)
               

               
               220-329, gnl|rn3|chr5 (135469606-135469420)
               


               
               417-712, gnl|bosTau2|chr27 (16642968-16642689)
               

               
               417-712, gnl|Hg17|chr1 (47361745-47361428)
               

               
               417-712, gnl|Mm7|chr4 (114469905-114470207)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cov (2.2466)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (2.2466)

	220-329, gnl\|bosTau2\|chr27 (16645487-16645378)
	220-329, gnl\|canFam2\|chr15 (16487453-16487242)
	220-329, gnl\|echTel1\|scaffold_286836 (393-582)
	220-329, gnl\|hg17\|chr1 (47364967-47365149)
	220-329, gnl\|Hg17\|chr1 (47365121-47365012)
	220-329, gnl\|loxAfr1\|scaffold_36967 (12-195)
	220-329, gnl\|mm7\|chr4 (114467749-114467558)
	220-329, gnl\|Mm7\|chr4 (114467579-114467688)
	220-329, gnl\|panTro1\|chr1 (45567691-45567873)
	220-329, gnl\|rheMac2\|chr1 (50011074-50011256)
	220-329, gnl\|rn3\|chr5 (135469606-135469420)

	417-712, gnl\|bosTau2\|chr27 (16642968-16642689)
	417-712, gnl\|Hg17\|chr1 (47361745-47361428)
	417-712, gnl\|Mm7\|chr4 (114469905-114470207)