Ss1.1-Pig4-TMW8045O21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGCACCATGAGCTCCCGACATTCTGCCAGCCCGGTTGTCTTCACCAGTGCCAGAAGCTC ACCTAAAGAAGAACTTCACCCGGCCACCTCCTCGCAGCTCGCCCCATCCTTCTCCTCCGC CGCCTCCTCCTCGGGGCCTCGGACCTTCTACCCACGCCAGGGCGCTACTAGCAAGTACCT GATTGGCTGGAAGAAACCCGAAGGAACCATAAACTCCGTGGGATTTATGGACACCAGAAA GCGTCATCAGAGTGATGGCAATGAAATAGCCCACACCAGGCTGCGCGCCTCAACCAGGGA CCTCCGGGCATCCCCAAAGCCAACCTCGAAGTCCACCATTGAGGAGGATCTCAAGAAACT CATTGACCTGGAAAGTCCAACTCCTGAATCCCAGAAGAACTTTAAGTTCCACGCGCTCTC CTCTCCTCAGTCTCCTTTTCCCACCACCCCCACCTCAAGGCGGGCCTTGCACAGAACGCT GTCCGATGAGAGTATTTACAGCGGCCAGAGGGAGCACTTTTTCACCTCAAGAGCTTCACT TCTGGACCAAGCCCTGCCCAACGACGTCCTCTTCAGTAGCACATACCCTTCTCTCCCCAA GTCTCTTCCGTTGCGGAGGCCGTCCTACACCTTGGGAATGAAGTCACTGCACGGAGAGTT CTCGGCTTCCGATAGCTCCCTCACCGATGTCCAGGAGAGCCGAAGGCCGCCCATGCCCGA CCCTGGCCTGATGCCCCTGCCTGACACTGCTGCGGATTTGGATTGGTCCAACCTGGTGGA TGCTGCCAAGGCCTATGAGGTCCAGAGAGCCTCGTTCTTTGCTGCTAGCGATGAAAACCA TCGCCCTCTGAGTGCCGCATCCAACAGTGACCAGCTTGAGGACCAGGCTCTGGCCCAGAT GAAGTCTTACAGCAGTAAAGATTCCTCTCCCACTCTGGCTTCTAAAGTGGACCAGCTGGA AGGGATGCTGAAGATGCTTCGAGAAGATTTGAAGAAGGAAAAAGAAGACAAAGCCCACCT CCAGGCGGAAGTTCAGCATCTGCGGGAGGACAACCTGAGGCTGCAGGAAGAGTCCCAGAA TGCCTCCGACAAGCTCAAGAAGTTCACCGAGTGGGTCTTCAACACCATAGACATGAGCTA GGCCAGGAGGGGGGCCACCCGCCAGCGGAGGCCTCCTCAGCCCTCCCTCCCCAGCTCCTG ACTCGCCCCCTTTCGGGGAGTGCACACCACGACAATTGCAGATCAACAATCATTATCTGC CTTTTGTAGAAAAGAGAAAGAAAATGGTAAATAAAAATTTTAAAAAGTAAAATAAAAGTT TAACTGCCTCAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGCACCATGAGCTCCCGACATTCTGCCAGCCCGGTTGTCTTCACCAGTGCCAGAAGCTC ACCTAAAGAAGAACTTCACCCGGCCACCTCCTCGCAGCTCGCCCCATCCTTCTCCTCCGC CGCCTCCTCCTCGGGGCCTCGGACCTTCTACCCACGCCAGGGCGCTACTAGCAAGTACCT GATTGGCTGGAAGAAACCCGAAGGAACCATAAACTCCGTGGGATTTATGGACACCAGAAA GCGTCATCAGAGTGATGGCAATGAAATAGCCCACACCAGGCTGCGCGCCTCAACCAGGGA CCTCCGGGCATCCCCAAAGCCAACCTCGAAGTCCACCATTGAGGAGGATCTCAAGAAACT CATTGACCTGGAAAGTCCAACTCCTGAATCCCAGAAGAACTTTAAGTTCCACGCGCTCTC CTCTCCTCAGTCTCCTTTTCCCACCACCCCCACCTCAAGGCGGGCCTTGCACAGAACGCT GTCCGATGAGAGTATTTACAGCGGCCAGAGGGAGCACTTTTTCACCTCAAGAGCTTCACT TCTGGACCAAGCCCTGCCCAACGACGTCCTCTTCAGTAGCACATACCCTTCTCTCCCCAA GTCTCTTCCGTTGCGGAGGCCGTCCTACACCTTGGGAATGAAGTCACTGCACGGAGAGTT CTCGGCTTCCGATAGCTCCCTCACCGATGTCCAGGAGAGCCGAAGGCCGCCCATGCCCGA CCCTGGCCTGATGCCCCTGCCTGACACTGCTGCGGATTTGGATTGGTCCAACCTGGTGGA TGCTGCCAAGGCCTATGAGGTCCAGAGAGCCTCGTTCTTTGCTGCTAGCGATGAAAACCA TCGCCCTCTGAGTGCCGCATCCAACAGTGACCAGCTTGAGGACCAGGCTCTGGCCCAGAT GAAGTCTTACAGCAGTAAAGATTCCTCTCCCACTCTGGCTTCTAAAGTGGACCAGCTGGA AGGGATGCTGAAGATGCTTCGAGAAGATTTGAAGAAGGAAAAAGAAGACAAAGCCCACCT CCAGGCGGAAGTTCAGCATCTGCGGGAGGACAACCTGAGGCTGCAGGAAGAGTCCCAGAA TGCCTCCGACAAGCTCAAGAAGTTCACCGAGTGGGTCTTCAACACCATAGACATGAGCTA GGCCAGGAGGGGGGCCACCCGCCAGCGGAGGCCTCCTCAGCCCTCCCTCCCCAGCTCCTG ACTCGCCCCCTTTCGGGGAGTGCACACCACGACAATTGCAGATCAACAATCATTATCTGC CTTTTGTAGAAAAGAGAAAGAAAATGGTAAATAAAAATTTTAAAAAGTAAAATAAAAGTT TAACTGCCTCAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 2-120, - strand, RNAz p=0.529009 | |
| 401-639, - strand, RNAz p=0.59793 | |
| 1204-1305, - strand, RNAz p=0.565316 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 2-120, - strand, RNAz p=0.529009 | |
| 401-639, - strand, RNAz p=0.59793 | |
| 1204-1305, - strand, RNAz p=0.565316 |
| Aligned organism(s): 55 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
| 2-241, gnl|bosTau2|chr10 (58566439-58566681) | |
| 2-241, gnl|Hg17|chr14 (71260115-71260357) | |
| 2-241, gnl|Mm7|chr12 (80425390-80425632) | |
| 401-654, gnl|bosTau2|chr10 (58572578-58572831) | |
| 401-654, gnl|Hg17|chr14 (71266519-71266772) | |
| 401-654, gnl|Mm7|chr12 (80430321-80430574) | |
| 800-915, gnl|bosTau2|chr10 (58577523-58577638) | |
| 800-915, gnl|canFam2|chr8 (48289248-48289350) | |
| 800-915, gnl|dasNov1|scaffold_39822 (7934-8036) | |
| 800-915, gnl|echTel1|scaffold_310784 (50230-50332) | |
| 800-915, gnl|galGal2|chr5 (24229503-24229410) | |
| 800-915, gnl|hg17|chr14 (71271731-71271833) | |
| 800-915, gnl|Hg17|chr14 (71271746-71271861) | |
| 800-915, gnl|loxAfr1|scaffold_8296 (10363-10261) | |
| 800-915, gnl|mm7|chr12 (80439440-80439542) | |
| 800-915, gnl|Mm7|chr12 (80439455-80439570) | |
| 800-915, gnl|monDom2|scaffold_8 (63978155-63978053) | |
| 800-915, gnl|oryCun1|scaffold_150371 (4007-3906) | |
| 800-915, gnl|panTro1|chr15 (71049836-71049938) | |
| 800-915, gnl|rheMac2|chr7 (134830514-134830616) | |
| 800-915, gnl|rn3|chr6 (106282612-106282714) | |
| 996-1156, gnl|bosTau2|chr10 (58581837-58581998) | |
| 996-1156, gnl|canFam2|chr8 (48292364-48292509) | |
| 996-1156, gnl|danRer3|chr20 (37727706-37727851) | |
| 996-1156, gnl|dasNov1|scaffold_39822 (11884-12031) | |
| 996-1156, gnl|echTel1|scaffold_310784 (53685-53830) | |
| 996-1156, gnl|fr1|chrUn (211888393-211888535) | |
| 996-1156, gnl|galGal2|chr5 (24228045-24227900) | |
| 996-1156, gnl|hg17|chr14 (71275482-71275627) | |
| 996-1156, gnl|Hg17|chr14 (71275486-71275652) | |
| 996-1156, gnl|loxAfr1|scaffold_8296 (5874-5729) | |
| 996-1156, gnl|mm7|chr12 (80442534-80442679) | |
| 996-1156, gnl|Mm7|chr12 (80442538-80442700) | |
| 996-1156, gnl|monDom2|scaffold_8 (63973983-63973838) | |
| 996-1156, gnl|oryCun1|scaffold_196162 (196928-197073) | |
| 996-1156, gnl|panTro1|chr15 (71053573-71053718) | |
| 996-1156, gnl|rheMac2|chr7 (134832306-134832451) | |
| 996-1156, gnl|rn3|chr6 (106286131-106286276) | |
| 996-1156, gnl|tetNig1|chr14 (4489721-4489576) | |
| 996-1156, gnl|xenTro1|scaffold_218 (1179932-1180077) | |
| 1158-1327, gnl|bosTau2|chr10 (58582021-58582193) | |
| 1158-1327, gnl|canFam2|chr8 (48292543-48292697) | |
| 1158-1327, gnl|dasNov1|scaffold_39822 (12058-12218) | |
| 1158-1327, gnl|echTel1|scaffold_310784 (53850-53995) | |
| 1158-1327, gnl|fr1|chrUn (211888585-211888764) | |
| 1158-1327, gnl|galGal2|chr5 (24227886-24227701) | |
| 1158-1327, gnl|hg17|chr14 (71275654-71275810) | |
| 1158-1327, gnl|Hg17|chr14 (71275699-71275870) | |
| 1158-1327, gnl|loxAfr1|scaffold_8296 (5697-5528) | |
| 1158-1327, gnl|mm7|chr12 (80442706-80442849) | |
| 1158-1327, gnl|Mm7|chr12 (80442739-80442908) | |
| 1158-1327, gnl|monDom2|scaffold_8 (63973786-63973626) | |
| 1158-1327, gnl|panTro1|chr15 (71053745-71053901) | |
| 1158-1327, gnl|rheMac2|chr7 (134832478-134832633) | |
| 1158-1327, gnl|rn3|chr6 (106286303-106286447) |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-241, gnl|bosTau2|chr10 (58566439-58566681) | |
| 2-241, gnl|Hg17|chr14 (71260115-71260357) | |
| 2-241, gnl|Mm7|chr12 (80425390-80425632) | |
| 401-654, gnl|bosTau2|chr10 (58572578-58572831) | |
| 401-654, gnl|Hg17|chr14 (71266519-71266772) | |
| 401-654, gnl|Mm7|chr12 (80430321-80430574) | |
| 800-915, gnl|bosTau2|chr10 (58577523-58577638) | |
| 800-915, gnl|canFam2|chr8 (48289248-48289350) | |
| 800-915, gnl|dasNov1|scaffold_39822 (7934-8036) | |
| 800-915, gnl|echTel1|scaffold_310784 (50230-50332) | |
| 800-915, gnl|galGal2|chr5 (24229503-24229410) | |
| 800-915, gnl|hg17|chr14 (71271731-71271833) | |
| 800-915, gnl|Hg17|chr14 (71271746-71271861) | |
| 800-915, gnl|loxAfr1|scaffold_8296 (10363-10261) | |
| 800-915, gnl|mm7|chr12 (80439440-80439542) | |
| 800-915, gnl|Mm7|chr12 (80439455-80439570) | |
| 800-915, gnl|monDom2|scaffold_8 (63978155-63978053) | |
| 800-915, gnl|oryCun1|scaffold_150371 (4007-3906) | |
| 800-915, gnl|panTro1|chr15 (71049836-71049938) | |
| 800-915, gnl|rheMac2|chr7 (134830514-134830616) | |
| 800-915, gnl|rn3|chr6 (106282612-106282714) | |
| 996-1156, gnl|bosTau2|chr10 (58581837-58581998) | |
| 996-1156, gnl|canFam2|chr8 (48292364-48292509) | |
| 996-1156, gnl|danRer3|chr20 (37727706-37727851) | |
| 996-1156, gnl|dasNov1|scaffold_39822 (11884-12031) | |
| 996-1156, gnl|echTel1|scaffold_310784 (53685-53830) | |
| 996-1156, gnl|fr1|chrUn (211888393-211888535) | |
| 996-1156, gnl|galGal2|chr5 (24228045-24227900) | |
| 996-1156, gnl|hg17|chr14 (71275482-71275627) | |
| 996-1156, gnl|Hg17|chr14 (71275486-71275652) | |
| 996-1156, gnl|loxAfr1|scaffold_8296 (5874-5729) | |
| 996-1156, gnl|mm7|chr12 (80442534-80442679) | |
| 996-1156, gnl|Mm7|chr12 (80442538-80442700) | |
| 996-1156, gnl|monDom2|scaffold_8 (63973983-63973838) | |
| 996-1156, gnl|oryCun1|scaffold_196162 (196928-197073) | |
| 996-1156, gnl|panTro1|chr15 (71053573-71053718) | |
| 996-1156, gnl|rheMac2|chr7 (134832306-134832451) | |
| 996-1156, gnl|rn3|chr6 (106286131-106286276) | |
| 996-1156, gnl|tetNig1|chr14 (4489721-4489576) | |
| 996-1156, gnl|xenTro1|scaffold_218 (1179932-1180077) | |
| 1158-1327, gnl|bosTau2|chr10 (58582021-58582193) | |
| 1158-1327, gnl|canFam2|chr8 (48292543-48292697) | |
| 1158-1327, gnl|dasNov1|scaffold_39822 (12058-12218) | |
| 1158-1327, gnl|echTel1|scaffold_310784 (53850-53995) | |
| 1158-1327, gnl|fr1|chrUn (211888585-211888764) | |
| 1158-1327, gnl|galGal2|chr5 (24227886-24227701) | |
| 1158-1327, gnl|hg17|chr14 (71275654-71275810) | |
| 1158-1327, gnl|Hg17|chr14 (71275699-71275870) | |
| 1158-1327, gnl|loxAfr1|scaffold_8296 (5697-5528) | |
| 1158-1327, gnl|mm7|chr12 (80442706-80442849) | |
| 1158-1327, gnl|Mm7|chr12 (80442739-80442908) | |
| 1158-1327, gnl|monDom2|scaffold_8 (63973786-63973626) | |
| 1158-1327, gnl|panTro1|chr15 (71053745-71053901) | |
| 1158-1327, gnl|rheMac2|chr7 (134832478-134832633) | |
| 1158-1327, gnl|rn3|chr6 (106286303-106286447) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| fcc (0.197785) | |
| csk (0.140746) | |
| pla (0.133672) | |
| ute (0.132784) | |
| ese (0.126502) | |
| med (0.116252) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fcc (0.197785) | |
| csk (0.140746) | |
| pla (0.133672) | |
| ute (0.132784) | |
| ese (0.126502) | |
| med (0.116252) |