Non-Coding RNA Search

Ss1.1-Pig4-TMW8045O23.3

Sequence:


               
               GAGACCACGCTGCTGGCCTTTCCTCTGCTCCCCCGTGCTCACCCCGGGCCCGCTCCCCAC
TTTCCCCGCCGCCCCTGGCTGGTCTCCTTAACAGTGGGATCAGAGCAGGGTCCCCTTTCC
CGCGTGGGCTCCTTCACCACCTCTTTGTCTCAGTCCTCAGAAGCGCCTCTGCTGCAGAGC
CCACAGCCAGGACCTCTCCGGGGACCTCGCTGGGTTTTCAGAGAAGATGAGTAACGGGAT
GCTGAGGAGGAACAGCGACAAGGTGGCCATGGCTGTGCCTGAGGAGGACCCAGCCCACCA
GGGGATCAGCCCCACTTTCGTCCTCCAGGAGACCTCACTGTGATCGGAACTCGGCCCCGG
CCCCAGAGGCCACCCTCTGGTACAGGGACGCGTTCCCTGAGGTTCTGCAGGGGTGATGGA
GGACTGGGTGATGAGCCCACACCAAAGGACCTCACTCTTAGGGGTCTGGGCTGCAGAAAC
GGTCCCATCGCGGAAGGTGTACGAGGAGGAGGAGGTTTTTCCTTGTTCGTGCCAGTCTGT
TCTCTGGAGATCCAGGCTTGCAGGGGGCAGGATTTTACCAGAAAAGGCGGTAGAGGCAGA
TCCTCTGGGAGGAGGATAACGGCTTCTGATTCAGCCTCCCCCAGCTCCATTATAGAAACG
CAGTGCTGGGCCCACTTTGGCAGACTGACCCTCTCCCTAGAAGAAAACTCCGAGCCACCT
TGGTCAGCTTTGCTCCCCTTGCAGTCCCGTCGGAGCACCAGTTCTGTCAGCCGCAGAGGG
CCCGTGATACTATTTTCAGGTTGTCTGTGATACCCAGGCCCCGCTCATTCTTAGCCATTG
ACTTCCATTCTTGAGAGGGAGGTTCTCGTGTCCCTGAGAGGCCCCTCCATCTCTTCGGCA
GAGAGTAGGAAGCTTTCCACCTGGCTGGCACCCGCCGCGTAAGGGGCGCTTGGGGATGGG
GCAGATGTTGATCCAAGAAACCAGGGTATGACCAGGTCCACTGTGGAGTGTGCCATCCTT
CTGACTCGGAAGCCATGCCACCCTCGTGTCACTTGGTCATTCACGCTCCTGTTTCCTTTC
GGAGTTTCTTCCCACATATCTTTGTTCCTAGGAAATAAAGACGGCCATTGGGCTGGTATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGACCACGCTGCTGGCCTTTCCTCTGCTCCCCCGTGCTCACCCCGGGCCCGCTCCCCAC
TTTCCCCGCCGCCCCTGGCTGGTCTCCTTAACAGTGGGATCAGAGCAGGGTCCCCTTTCC
CGCGTGGGCTCCTTCACCACCTCTTTGTCTCAGTCCTCAGAAGCGCCTCTGCTGCAGAGC
CCACAGCCAGGACCTCTCCGGGGACCTCGCTGGGTTTTCAGAGAAGATGAGTAACGGGAT
GCTGAGGAGGAACAGCGACAAGGTGGCCATGGCTGTGCCTGAGGAGGACCCAGCCCACCA
GGGGATCAGCCCCACTTTCGTCCTCCAGGAGACCTCACTGTGATCGGAACTCGGCCCCGG
CCCCAGAGGCCACCCTCTGGTACAGGGACGCGTTCCCTGAGGTTCTGCAGGGGTGATGGA
GGACTGGGTGATGAGCCCACACCAAAGGACCTCACTCTTAGGGGTCTGGGCTGCAGAAAC
GGTCCCATCGCGGAAGGTGTACGAGGAGGAGGAGGTTTTTCCTTGTTCGTGCCAGTCTGT
TCTCTGGAGATCCAGGCTTGCAGGGGGCAGGATTTTACCAGAAAAGGCGGTAGAGGCAGA
TCCTCTGGGAGGAGGATAACGGCTTCTGATTCAGCCTCCCCCAGCTCCATTATAGAAACG
CAGTGCTGGGCCCACTTTGGCAGACTGACCCTCTCCCTAGAAGAAAACTCCGAGCCACCT
TGGTCAGCTTTGCTCCCCTTGCAGTCCCGTCGGAGCACCAGTTCTGTCAGCCGCAGAGGG
CCCGTGATACTATTTTCAGGTTGTCTGTGATACCCAGGCCCCGCTCATTCTTAGCCATTG
ACTTCCATTCTTGAGAGGGAGGTTCTCGTGTCCCTGAGAGGCCCCTCCATCTCTTCGGCA
GAGAGTAGGAAGCTTTCCACCTGGCTGGCACCCGCCGCGTAAGGGGCGCTTGGGGATGGG
GCAGATGTTGATCCAAGAAACCAGGGTATGACCAGGTCCACTGTGGAGTGTGCCATCCTT
CTGACTCGGAAGCCATGCCACCCTCGTGTCACTTGGTCATTCACGCTCCTGTTTCCTTTC
GGAGTTTCTTCCCACATATCTTTGTTCCTAGGAAATAAAGACGGCCATTGGGCTGGTATC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57098187|ref|XP_532905.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57098187|ref|XP_532905.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               21-121, - strand, RNAz p=0.998786

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               21-121, - strand, RNAz p=0.998786

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               21-1140, gnl|bosTau2|chr11 (52116394-52117533)
               

               
               21-1140, gnl|Hg17|chr2 (27335272-27334104)
               

               
               21-1140, gnl|Mm7|chr5 (30069567-30068556)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               21-1140, gnl|bosTau2|chr11 (52116394-52117533)
               

               
               21-1140, gnl|Hg17|chr2 (27335272-27334104)
               

               
               21-1140, gnl|Mm7|chr5 (30069567-30068556)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               ute (0.531138)
               

               
               fbs (0.526039)
               

               
               cli (0.458435)
               

               
               cga (0.279096)
               

               
               duo (0.172801)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               ebs (0.118301)
               

               
               jej (0.0989218)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ute (0.531138)
               

               
               fbs (0.526039)
               

               
               cli (0.458435)
               

               
               cga (0.279096)
               

               
               duo (0.172801)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               ebs (0.118301)
               

               
               jej (0.0989218)

	21-1140, gnl\|bosTau2\|chr11 (52116394-52117533)
	21-1140, gnl\|Hg17\|chr2 (27335272-27334104)
	21-1140, gnl\|Mm7\|chr5 (30069567-30068556)

	ute (0.531138)
	fbs (0.526039)
	cli (0.458435)
	cga (0.279096)
	duo (0.172801)
	nje (0.16592)
	cje (0.165235)
	ebs (0.118301)
	jej (0.0989218)