Non-Coding RNA Search

Ss1.1-Pig4-TMW8045P03.5

Sequence:


               
               TTAGACCTTCCAAGATACTGGCCTTTATTTCTCTCCTCTCAGGCTGCAGCCTCGAAATCC
TATTCTTTCCTGCCCAGGTTTCCCTGTGTCCCTCCAGTCCCAGAACCAACTCTGCCATTT
CCTTACCATGTGCGTCTTCACGTGCACCGCTCAGCACGGGGCCATCAACCAGGGCCAGGT
ATGGACAGCTGAAAGCCCAGGTCCCCGAAGGCAAGTGTCTGGACCTTGGGAGGCCTGATG
TCCGACAGGCCTGTCTTCAAATGGCCATCACATGGCATCTGGGTCGCCGCCAGCCAGACA
TGGTAAGAGAGGACGCTTAACAACTTGTTCACTGAGTCTGCTTTCCCTGGACTTTTCCTA
ACGCCCGTATTTTTCCTGGACTTGGCATCCAAAACGCTTCAGTAGTCCATGCTTGGTAAC
AAAACGCTACCTAAGTATTTCCAGCGCCAAGAACCCTCAGCAATCTTAAGGCGCTCTTGC
CACAGCAAGTAGGCTTGGGCTTGGGAGGGGGCTCCTGCCTCCTTTTCCTGGGTCAGGACG
TCTATTTTAAAAGGTAGGGATGCGTAGAGAGGAGATACAGAGGTTCTCCCTCCGTTTAAA
TCTCTGTCTCTACTTACCACGCCCCCTTCAGGATACCACCCGTGACTATGGTATCTGAAA
GAAAAATCAGATAACTTCAGTCCTCTGCCCCTAAGAGCCCATCGCCAAGGTCACCTGGGT
CTCCGGCAGAGCTTAAACTCTTTCCCGAGGCCGAGCTACGGCTTCCTCCTCTTCATTTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAGACCTTCCAAGATACTGGCCTTTATTTCTCTCCTCTCAGGCTGCAGCCTCGAAATCC
TATTCTTTCCTGCCCAGGTTTCCCTGTGTCCCTCCAGTCCCAGAACCAACTCTGCCATTT
CCTTACCATGTGCGTCTTCACGTGCACCGCTCAGCACGGGGCCATCAACCAGGGCCAGGT
ATGGACAGCTGAAAGCCCAGGTCCCCGAAGGCAAGTGTCTGGACCTTGGGAGGCCTGATG
TCCGACAGGCCTGTCTTCAAATGGCCATCACATGGCATCTGGGTCGCCGCCAGCCAGACA
TGGTAAGAGAGGACGCTTAACAACTTGTTCACTGAGTCTGCTTTCCCTGGACTTTTCCTA
ACGCCCGTATTTTTCCTGGACTTGGCATCCAAAACGCTTCAGTAGTCCATGCTTGGTAAC
AAAACGCTACCTAAGTATTTCCAGCGCCAAGAACCCTCAGCAATCTTAAGGCGCTCTTGC
CACAGCAAGTAGGCTTGGGCTTGGGAGGGGGCTCCTGCCTCCTTTTCCTGGGTCAGGACG
TCTATTTTAAAAGGTAGGGATGCGTAGAGAGGAGATACAGAGGTTCTCCCTCCGTTTAAA
TCTCTGTCTCTACTTACCACGCCCCCTTCAGGATACCACCCGTGACTATGGTATCTGAAA
GAAAAATCAGATAACTTCAGTCCTCTGCCCCTAAGAGCCCATCGCCAAGGTCACCTGGGT
CTCCGGCAGAGCTTAAACTCTTTCCCGAGGCCGAGCTACGGCTTCCTCCTCTTCATTTGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               2-119, - strand, RNAz p=0.97917

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-119, - strand, RNAz p=0.97917

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               2-235, gnl|bosTau2|chr19 (14653969-14654202)
               

               
               2-235, gnl|Hg17|chr17 (6853713-6853933)
               


               
               316-775, gnl|bosTau2|chr19 (14656605-14657059)
               

               
               316-775, gnl|Hg17|chr17 (6855946-6856389)
               

               
               316-775, gnl|Mm7|chr11 (70322106-70321699)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-235, gnl|bosTau2|chr19 (14653969-14654202)
               

               
               2-235, gnl|Hg17|chr17 (6853713-6853933)
               


               
               316-775, gnl|bosTau2|chr19 (14656605-14657059)
               

               
               316-775, gnl|Hg17|chr17 (6855946-6856389)
               

               
               316-775, gnl|Mm7|chr11 (70322106-70321699)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               amn (0.417711)
               

               
               duo (0.172801)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               duo (0.172801)

	2-235, gnl\|bosTau2\|chr19 (14653969-14654202)
	2-235, gnl\|Hg17\|chr17 (6853713-6853933)

	316-775, gnl\|bosTau2\|chr19 (14656605-14657059)
	316-775, gnl\|Hg17\|chr17 (6855946-6856389)
	316-775, gnl\|Mm7\|chr11 (70322106-70321699)