Ss1.1-Pig4-TMW8045P05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCAGGCCATCAGCATCCTGCAGAAAGCCAAAGATAATGTCCAGCTAGTTATTGCCAGAGG CTCATTGCCTCAGCTCATCAGCCCCATAGTTTCCCGTTCTCCTTCTGCGGCCAGCACCAT TTCAGCTCACTCCAATCCGGTTCACTGGCAGCATGTGGAAACTATCGAATTGGTGAATGA TGGTTCTGGTCTGGGATTTGGCATTGTAGGAGGAAAAGCAACTGGTGTGATCGTGAAAAC CATTCTCCCTGGAGGAGTAGCTGATCAGCATGGAAGATTATGCAGTGGTGACCACATCCT AAAGATTGGTGACACAGATCTAGCAGGAATGAGCAGTGAGCAAGTGGCCCAAGTCCTCAG ACAATGTGGCAATAGAGTCAAGTTGATGATTGCGAGAGGTGCGATAGAAGAACCAGCAGC ACCCGCCTCTTTGGGTGTCACGCTTTCCTCATCTCCATCTTCCACTCCAGAGATGCGGGT TGATGCTTCCACTCAGAAAAGTGAAGAAAGTGAGACATTTGATGTAGAACTCACTAAAAA TGTCCAAGGATTGGGAATTACCATTGCTGGTTACATTGGCGATAAAAAATTAGAACCTTC AGGAATCTTTGTAAAGAGCATTACAAAGAGCAGTGCTGTTGAACATGATGGAAGAATCCA AATTGGAGACCAAATTATAGCAGTAGATGGCACAAACCTTCAGGGTTTTACCAATCAACA AGCAGTAGAGGTGTTGCGACACACAGGACAGACTGTGCACCTGACACTGATGAGGAGAGG AATGAAGCAAGAAGCAGAGCTCACATCAAGGGAGGATGTCACCAAAGACACGGTTTTGTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCAGGCCATCAGCATCCTGCAGAAAGCCAAAGATAATGTCCAGCTAGTTATTGCCAGAGG CTCATTGCCTCAGCTCATCAGCCCCATAGTTTCCCGTTCTCCTTCTGCGGCCAGCACCAT TTCAGCTCACTCCAATCCGGTTCACTGGCAGCATGTGGAAACTATCGAATTGGTGAATGA TGGTTCTGGTCTGGGATTTGGCATTGTAGGAGGAAAAGCAACTGGTGTGATCGTGAAAAC CATTCTCCCTGGAGGAGTAGCTGATCAGCATGGAAGATTATGCAGTGGTGACCACATCCT AAAGATTGGTGACACAGATCTAGCAGGAATGAGCAGTGAGCAAGTGGCCCAAGTCCTCAG ACAATGTGGCAATAGAGTCAAGTTGATGATTGCGAGAGGTGCGATAGAAGAACCAGCAGC ACCCGCCTCTTTGGGTGTCACGCTTTCCTCATCTCCATCTTCCACTCCAGAGATGCGGGT TGATGCTTCCACTCAGAAAAGTGAAGAAAGTGAGACATTTGATGTAGAACTCACTAAAAA TGTCCAAGGATTGGGAATTACCATTGCTGGTTACATTGGCGATAAAAAATTAGAACCTTC AGGAATCTTTGTAAAGAGCATTACAAAGAGCAGTGCTGTTGAACATGATGGAAGAATCCA AATTGGAGACCAAATTATAGCAGTAGATGGCACAAACCTTCAGGGTTTTACCAATCAACA AGCAGTAGAGGTGTTGCGACACACAGGACAGACTGTGCACCTGACACTGATGAGGAGAGG AATGAAGCAAGAAGCAGAGCTCACATCAAGGGAGGATGTCACCAAAGACACGGTTTTGTC |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 346-465, - strand, RNAz p=0.548677 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 346-465, - strand, RNAz p=0.548677 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-141, gnl|bosTau2|chr8 (14703342-14703482) | |
| 1-141, gnl|canFam2|chr11 (36823884-36824121) | |
| 1-141, gnl|danRer3|chr1 (40804237-40804472) | |
| 1-141, gnl|dasNov1|scaffold_3127 (19668-19431) | |
| 1-141, gnl|echTel1|scaffold_311279 (155316-155553) | |
| 1-141, gnl|fr1|chrUn (90003734-90003496) | |
| 1-141, gnl|galGal2|chrZ_random (2123623-2123377) | |
| 1-141, gnl|hg17|chr9 (13212228-13212465) | |
| 1-141, gnl|Hg17|chr9 (13212370-13212230) | |
| 1-141, gnl|loxAfr1|scaffold_35054 (42708-42469) | |
| 1-141, gnl|mm7|chr4 (80787481-80787718) | |
| 1-141, gnl|Mm7|chr4 (80787623-80787483) | |
| 1-141, gnl|monDom2|scaffold_5 (101489405-101489165) | |
| 1-141, gnl|oryCun1|scaffold_200256 (113253-113016) | |
| 1-141, gnl|panTro1|chr11 (13408666-13408903) | |
| 1-141, gnl|rheMac2|chr15 (63702919-63702682) | |
| 1-141, gnl|rn3|chr5 (100130168-100130405) | |
| 1-141, gnl|tetNig1|chrUn_random (56213420-56213185) | |
| 1-141, gnl|xenTro1|scaffold_607 (161434-161671) | |
| 267-480, gnl|bosTau2|chr8 (14706527-14706740) | |
| 267-480, gnl|Hg17|chr9 (13209769-13209556) | |
| 267-480, gnl|Mm7|chr4 (80785608-80785395) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-141, gnl|bosTau2|chr8 (14703342-14703482) | |
| 1-141, gnl|canFam2|chr11 (36823884-36824121) | |
| 1-141, gnl|danRer3|chr1 (40804237-40804472) | |
| 1-141, gnl|dasNov1|scaffold_3127 (19668-19431) | |
| 1-141, gnl|echTel1|scaffold_311279 (155316-155553) | |
| 1-141, gnl|fr1|chrUn (90003734-90003496) | |
| 1-141, gnl|galGal2|chrZ_random (2123623-2123377) | |
| 1-141, gnl|hg17|chr9 (13212228-13212465) | |
| 1-141, gnl|Hg17|chr9 (13212370-13212230) | |
| 1-141, gnl|loxAfr1|scaffold_35054 (42708-42469) | |
| 1-141, gnl|mm7|chr4 (80787481-80787718) | |
| 1-141, gnl|Mm7|chr4 (80787623-80787483) | |
| 1-141, gnl|monDom2|scaffold_5 (101489405-101489165) | |
| 1-141, gnl|oryCun1|scaffold_200256 (113253-113016) | |
| 1-141, gnl|panTro1|chr11 (13408666-13408903) | |
| 1-141, gnl|rheMac2|chr15 (63702919-63702682) | |
| 1-141, gnl|rn3|chr5 (100130168-100130405) | |
| 1-141, gnl|tetNig1|chrUn_random (56213420-56213185) | |
| 1-141, gnl|xenTro1|scaffold_607 (161434-161671) | |
| 267-480, gnl|bosTau2|chr8 (14706527-14706740) | |
| 267-480, gnl|Hg17|chr9 (13209769-13209556) | |
| 267-480, gnl|Mm7|chr4 (80785608-80785395) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ldo (0.0970026) |