Ss1.1-Pig4-TMW8045P10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACAGCGAGCCGAGGCCAGCCTGACCCACAGAGACTGAGCACGGTGCCGCCCCCCGACAAC CATGCCGGAAGTTGAGAGAAAACCCAAGATCACTGCCTCCCGCAAACTCCTGCTGAAGAG CCTGATGCTGGCCAAGGCCAAGGAGTGCTGGGAGCAGGAACACGAGGAGCGAGAGGCTGA GAAGGCTCGCTACCTGGCCGAGCGCATCCCTACGCTGCAGACCCGAGGCCTGTCCCTCAG CGCCCTGCAGGACCTGTGCCGGGAACTTCACGCCAAGGTGGAGGTAGTGGATGAGGAGAG ATATGACATTGAGGCCAAATGCCTGCACAACACCAGGGAGATCAAGGACCTGAAGCTCAA GGTGCTGGATCTGCGCGGGAAGTTCAAGCGCCCTCCCCTGCGGCGTGTCCGCGTCTCGGC TGATGCCATGCTGCGTGCCCTGCTGGGCTCTAAACACAAGGTGTCCATGGACCTGCGTGC CAACCTCAAGTCCGTGAAGAAGGAGGATACGGAGAAGGAGCGGCCCGTGGAGGTGGGTGA CTGGAGAAAGAACGTCGAGGCCATGTCTGGGATGGAGGGCCGGAAGAAAATGTTTGATGC CGCCAAGTCCCCAACGTCTCAGTAGAGGCCACTGGCCGAGCTGTGCTCTGGGCTCCCTGC ACGCTTCTTCCTCCAGCCCCGCTCACCCGCATCTCAGCATCTCCCCCTGCGTTTCAGAGG GTCCCGCTCTGCTCCCCGTCTCCCCTCCAGCCTGAGCGCTCTCCTGCGGGGCTGAGATAA CAGACTCCTGAGGAAGAACAGCGGTGTGCCAAGACCTCGCCTGGCGGGAGGGATCCCTGG GGCTCCTGGCCGCTGTGGGGCAGCCAGGCCCCGGGAGGGGCTGCCCCCTCCACTCAGCAT GTCGCGTGCCTGAGGGCGTCACAGCCTCTCCATTAAAGCAGTGTCCTGGTCGTTTCTGCC AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACAGCGAGCCGAGGCCAGCCTGACCCACAGAGACTGAGCACGGTGCCGCCCCCCGACAAC CATGCCGGAAGTTGAGAGAAAACCCAAGATCACTGCCTCCCGCAAACTCCTGCTGAAGAG CCTGATGCTGGCCAAGGCCAAGGAGTGCTGGGAGCAGGAACACGAGGAGCGAGAGGCTGA GAAGGCTCGCTACCTGGCCGAGCGCATCCCTACGCTGCAGACCCGAGGCCTGTCCCTCAG CGCCCTGCAGGACCTGTGCCGGGAACTTCACGCCAAGGTGGAGGTAGTGGATGAGGAGAG ATATGACATTGAGGCCAAATGCCTGCACAACACCAGGGAGATCAAGGACCTGAAGCTCAA GGTGCTGGATCTGCGCGGGAAGTTCAAGCGCCCTCCCCTGCGGCGTGTCCGCGTCTCGGC TGATGCCATGCTGCGTGCCCTGCTGGGCTCTAAACACAAGGTGTCCATGGACCTGCGTGC CAACCTCAAGTCCGTGAAGAAGGAGGATACGGAGAAGGAGCGGCCCGTGGAGGTGGGTGA CTGGAGAAAGAACGTCGAGGCCATGTCTGGGATGGAGGGCCGGAAGAAAATGTTTGATGC CGCCAAGTCCCCAACGTCTCAGTAGAGGCCACTGGCCGAGCTGTGCTCTGGGCTCCCTGC ACGCTTCTTCCTCCAGCCCCGCTCACCCGCATCTCAGCATCTCCCCCTGCGTTTCAGAGG GTCCCGCTCTGCTCCCCGTCTCCCCTCCAGCCTGAGCGCTCTCCTGCGGGGCTGAGATAA CAGACTCCTGAGGAAGAACAGCGGTGTGCCAAGACCTCGCCTGGCGGGAGGGATCCCTGG GGCTCCTGGCCGCTGTGGGGCAGCCAGGCCCCGGGAGGGGCTGCCCCCTCCACTCAGCAT GTCGCGTGCCTGAGGGCGTCACAGCCTCTCCATTAAAGCAGTGTCCTGGTCGTTTCTGCC AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 108-251, gnl|bosTau2|chr16 (47171987-47171845) | |
| 108-251, gnl|canFam2|chr7 (4474746-4474590) | |
| 108-251, gnl|danRer3|chr23 (1949424-1949284) | |
| 108-251, gnl|dasNov1|scaffold_67693 (6751-6594) | |
| 108-251, gnl|echTel1|scaffold_143248 (452-293) | |
| 108-251, gnl|fr1|chrUn (26971216-26971059) | |
| 108-251, gnl|galGal2|chr32 (339154-339290) | |
| 108-251, gnl|hg17|chr1 (198115293-198115450) | |
| 108-251, gnl|Hg17|chr1 (198115444-198115302) | |
| 108-251, gnl|loxAfr1|scaffold_20528 (15996-15840) | |
| 108-251, gnl|mm7|chr1 (135691829-135691672) | |
| 108-251, gnl|Mm7|chr1 (135691676-135691818) | |
| 108-251, gnl|monDom2|scaffold_13 (820366-820519) | |
| 108-251, gnl|oryCun1|scaffold_157613 (3413-3574) | |
| 108-251, gnl|panTro1|chr1 (180805995-180806152) | |
| 108-251, gnl|rheMac2|chr1 (169084434-169084277) | |
| 108-251, gnl|rn3|chr13 (48851000-48850843) | |
| 108-251, gnl|tetNig1|chr9 (4619119-4618966) | |
| 108-251, gnl|xenTro1|scaffold_11 (125143-125000) | |
| 339-518, gnl|bosTau2|chr16 (47169625-47169446) | |
| 339-518, gnl|Hg17|chr1 (198112320-198112141) | |
| 339-518, gnl|Mm7|chr1 (135694819-135694998) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 108-251, gnl|bosTau2|chr16 (47171987-47171845) | |
| 108-251, gnl|canFam2|chr7 (4474746-4474590) | |
| 108-251, gnl|danRer3|chr23 (1949424-1949284) | |
| 108-251, gnl|dasNov1|scaffold_67693 (6751-6594) | |
| 108-251, gnl|echTel1|scaffold_143248 (452-293) | |
| 108-251, gnl|fr1|chrUn (26971216-26971059) | |
| 108-251, gnl|galGal2|chr32 (339154-339290) | |
| 108-251, gnl|hg17|chr1 (198115293-198115450) | |
| 108-251, gnl|Hg17|chr1 (198115444-198115302) | |
| 108-251, gnl|loxAfr1|scaffold_20528 (15996-15840) | |
| 108-251, gnl|mm7|chr1 (135691829-135691672) | |
| 108-251, gnl|Mm7|chr1 (135691676-135691818) | |
| 108-251, gnl|monDom2|scaffold_13 (820366-820519) | |
| 108-251, gnl|oryCun1|scaffold_157613 (3413-3574) | |
| 108-251, gnl|panTro1|chr1 (180805995-180806152) | |
| 108-251, gnl|rheMac2|chr1 (169084434-169084277) | |
| 108-251, gnl|rn3|chr13 (48851000-48850843) | |
| 108-251, gnl|tetNig1|chr9 (4619119-4618966) | |
| 108-251, gnl|xenTro1|scaffold_11 (125143-125000) | |
| 339-518, gnl|bosTau2|chr16 (47169625-47169446) | |
| 339-518, gnl|Hg17|chr1 (198112320-198112141) | |
| 339-518, gnl|Mm7|chr1 (135694819-135694998) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| mas (2.52366) | |
| ese (2.40354) | |
| ssp (1.62624) | |
| nms (1.06929) | |
| nep (0.919625) | |
| eru (0.720288) | |
| vin (0.332557) | |
| sme (0.305437) | |
| jca (0.22792) | |
| nbm (0.198649) | |
| col (0.195008) | |
| ldo (0.194005) | |
| eli (0.151814) | |
| eep (0.122564) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mas (2.52366) | |
| ese (2.40354) | |
| ssp (1.62624) | |
| nms (1.06929) | |
| nep (0.919625) | |
| eru (0.720288) | |
| vin (0.332557) | |
| sme (0.305437) | |
| jca (0.22792) | |
| nbm (0.198649) | |
| col (0.195008) | |
| ldo (0.194005) | |
| eli (0.151814) | |
| eep (0.122564) |