Non-Coding RNA Search

Ss1.1-Pig4-TMW8045P12.3

Sequence:


               
               AAGGTGTGCGCACCCTCTCCCGCTGCCGCTGGAAGAAGTTCTTCTGCTTTGTTTGAACAG
CTGTGGCAGCACAATGATCAATAGGCTAATGGCCACAGACTTCTAGAACCTGGGGCACAG
GGCCTTTGAGGGCTGTGCTGGCAGGGCCCAGCCACCCCATGGGACTCAGTTCTTGTCTGA
ACACTGTGGAGACTCGGGCCTTTACTTCTGTGTGCCCGGGTGAGCCTAGGGCCTGGAGGA
GGGAAGGCTCTGACTTGGATTTCTATGGTCAGGGCTCACAGAGAGATCCCAGTACTTGGA
TTTTCATGGGGTGATCCAAACAGTGTCAGCCATCTCCAAGCAGTTTGGGATCCAATTTCC
AGTTTCTTGTTGTGGGCCCTCAGATCATCCTGCATGAATTGGGACCCCTCATAGTGGTCC
CCACCCGCTCTTTGGCACCAGGGTGAGGAAGAGCCTGGGGAACAGCATCCTGAAGGGCTG
TGGTGTCTGGCCCTGACTTGGAGAGGAGATTAGGATGGATTAGTTAAGACAAAGGTCAGT
GAGAGATTGAGAGGGAGCAGAGGGTAAAGCCTTGGAACCTTGGGACCGGAGGCAGGCTGG
AGAAGAGGAGGCAGATCAGAGGGCCAGGCTTGGAAGGAAGAAAAGAAAAGGAGAGCAGAG
AAGTGGGGCAGCTGGGAACCAAGGCTGACACCTGGGCTGCCCTTAACCCCCAAGGCCATG
GAGGGCGGGGCTGGTCCCTGGGAAGAACTGGGTCTCAGGTCTCCCTAGGCACTGCCCAAA
CTGGCTGGGCCAGGAAGTGAGAGGCAAGGCGCAGCAAGAGGAGGGGGAGGAGCTGCAAAC
TGGAGCCTGAAAGAAGAAGGGGCTTTCTCCAAGGTCACAGTCTGGAAGATAGGGCAGTGT
GGAGTCTACAAATAAAGCCTTAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGGTGTGCGCACCCTCTCCCGCTGCCGCTGGAAGAAGTTCTTCTGCTTTGTTTGAACAG
CTGTGGCAGCACAATGATCAATAGGCTAATGGCCACAGACTTCTAGAACCTGGGGCACAG
GGCCTTTGAGGGCTGTGCTGGCAGGGCCCAGCCACCCCATGGGACTCAGTTCTTGTCTGA
ACACTGTGGAGACTCGGGCCTTTACTTCTGTGTGCCCGGGTGAGCCTAGGGCCTGGAGGA
GGGAAGGCTCTGACTTGGATTTCTATGGTCAGGGCTCACAGAGAGATCCCAGTACTTGGA
TTTTCATGGGGTGATCCAAACAGTGTCAGCCATCTCCAAGCAGTTTGGGATCCAATTTCC
AGTTTCTTGTTGTGGGCCCTCAGATCATCCTGCATGAATTGGGACCCCTCATAGTGGTCC
CCACCCGCTCTTTGGCACCAGGGTGAGGAAGAGCCTGGGGAACAGCATCCTGAAGGGCTG
TGGTGTCTGGCCCTGACTTGGAGAGGAGATTAGGATGGATTAGTTAAGACAAAGGTCAGT
GAGAGATTGAGAGGGAGCAGAGGGTAAAGCCTTGGAACCTTGGGACCGGAGGCAGGCTGG
AGAAGAGGAGGCAGATCAGAGGGCCAGGCTTGGAAGGAAGAAAAGAAAAGGAGAGCAGAG
AAGTGGGGCAGCTGGGAACCAAGGCTGACACCTGGGCTGCCCTTAACCCCCAAGGCCATG
GAGGGCGGGGCTGGTCCCTGGGAAGAACTGGGTCTCAGGTCTCCCTAGGCACTGCCCAAA
CTGGCTGGGCCAGGAAGTGAGAGGCAAGGCGCAGCAAGAGGAGGGGGAGGAGCTGCAAAC
TGGAGCCTGAAAGAAGAAGGGGCTTTCTCCAAGGTCACAGTCTGGAAGATAGGGCAGTGT
GGAGTCTACAAATAAAGCCTTAAG

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               198-307, - strand, RNAz p=0.519024
               

               
               466-580, + strand, RNAz p=0.810494
               

               
               661-875, - strand, RNAz p=0.756426

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               198-307, - strand, RNAz p=0.519024
               

               
               466-580, + strand, RNAz p=0.810494
               

               
               661-875, - strand, RNAz p=0.756426

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               716-824, + strand, RNAmicro p=0.915478

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               716-824, + strand, RNAmicro p=0.915478

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-924, gnl|bosTau2|chr10 (25687403-25686460)
               

               
               1-924, gnl|Hg17|chr15 (38952603-38951712)
               

               
               1-924, gnl|Mm7|chr2 (119010948-119010058)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-924, gnl|bosTau2|chr10 (25687403-25686460)
               

               
               1-924, gnl|Hg17|chr15 (38952603-38951712)
               

               
               1-924, gnl|Mm7|chr2 (119010948-119010058)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ece (0.229305)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)

	198-307, - strand, RNAz p=0.519024
	466-580, + strand, RNAz p=0.810494
	661-875, - strand, RNAz p=0.756426

	1-924, gnl\|bosTau2\|chr10 (25687403-25686460)
	1-924, gnl\|Hg17\|chr15 (38952603-38951712)
	1-924, gnl\|Mm7\|chr2 (119010948-119010058)